Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 6.7e-60 235.0 258 100.0
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 3.1e-41 172.9 264 83.0
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 1.4e-38 164.1 258 86.4
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.0e-36 157.9 263 81.4
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.8e-36 157.1 262 81.7
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.8e-36 157.1 253 83.8
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 3.9e-36 156.0 262 81.3
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 3.9e-36 156.0 264 84.5
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.1e-35 154.5 262 84.0
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.5e-35 153.3 261 82.0
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 4.3e-35 152.5 263 84.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 9.7e-35 151.4 262 80.2
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 9.7e-35 151.4 262 80.2
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 2.2e-34 150.2 263 82.9
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 4.8e-34 149.1 265 83.8
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 6.3e-34 148.7 260 82.7
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.8e-33 147.1 263 81.7
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 9.1e-33 144.8 259 83.4
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 7.7e-32 141.7 262 80.9
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.7e-31 140.6 261 77.8
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 5.0e-31 139.0 262 79.4
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 5.0e-31 139.0 262 77.1
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.2e-30 136.0 258 80.6
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.2e-29 134.4 263 80.2
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.7e-29 133.3 264 78.0
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.7e-29 133.3 265 77.7
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.6e-29 132.9 257 75.5
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.8e-28 130.6 263 76.4
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.8e-28 130.6 255 83.5
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.3e-28 130.2 258 76.4
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 3.0e-28 129.8 260 78.5
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 8.8e-28 128.3 248 79.4
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.1e-27 127.9 258 74.0
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.3e-27 126.3 258 77.1
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 4.4e-27 125.9 265 68.3
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.3e-26 124.4 263 70.3
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 3.7e-26 122.9 245 74.7
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 3.1e-25 119.8 253 75.5
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.6e-24 117.5 253 76.3
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 4.5e-24 115.9 254 76.4
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.9e-23 113.2 256 75.0
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 6.5e-23 112.1 261 77.8
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 8.5e-23 111.7 269 69.9
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.9e-22 110.5 270 68.5
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.9e-22 110.5 270 69.6
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.5e-22 110.2 262 73.7
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.5e-22 110.2 247 76.9
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 3.2e-22 109.8 244 71.7
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 7.2e-22 108.6 264 73.9
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.6e-21 107.5 256 74.6
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.6e-21 107.5 246 76.8
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.6e-21 107.5 247 76.5
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 2.1e-21 107.1 261 50.6
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 2.1e-21 107.1 262 73.3
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 3.6e-21 106.3 270 68.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 3.6e-21 106.3 241 57.3
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 6.1e-21 105.5 255 70.2
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.4e-20 104.4 264 62.1
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 1.8e-20 104.0 247 72.5
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.0e-20 103.2 263 76.8
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 8.8e-20 101.7 267 76.4
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.6e-19 100.1 264 75.8
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.3e-19 99.8 250 79.6
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 4.4e-19 99.4 227 80.2
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.8e-18 96.7 263 76.4
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 4.8e-18 95.9 261 72.8
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 1.8e-17 94.0 273 70.0
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 4.1e-17 92.8 272 68.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 7.0e-17 92.0 262 72.1
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 1.2e-16 91.3 258 72.1
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 5.9e-16 89.0 262 69.1
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 7.7e-16 88.6 277 37.9
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.0e-15 88.2 216 58.8
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.0e-15 88.2 65 69.2
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 3.8e-15 86.3 57 73.7
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 6.5e-15 85.5 258 65.5
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 2.5e-14 83.6 50 76.0
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 7.2e-14 82.0 263 73.0
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 1.2e-13 81.3 67 65.7
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 1.6e-13 80.9 54 70.4
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.6e-13 80.9 54 70.4
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.6e-13 80.9 54 70.4
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.7e-13 80.1 247 71.7
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 2.7e-13 80.1 55 74.5
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 3.6e-13 79.7 55 69.1
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 3.6e-13 79.7 55 67.3
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 6.1e-13 79.0 50 72.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.4e-12 77.8 50 72.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.8e-12 77.4 71 64.8
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.8e-12 77.4 264 70.1
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 4.0e-12 76.3 260 70.8
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 6.8e-12 75.5 50 70.0
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 6.8e-12 75.5 56 69.6
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 1.5e-11 74.3 252 68.3
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.5e-11 74.3 71 56.3
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.0e-11 73.9 52 71.2
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 2.0e-11 73.9 52 71.2
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 2.0e-11 73.9 252 71.8
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.6e-11 73.6 49 71.4
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 2.6e-11 73.6 49 71.4
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 3.4e-11 73.2 61 63.9
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 4.4e-11 72.8 247 73.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 4.4e-11 72.8 51 64.7
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.4e-11 72.8 65 60.0
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.7e-11 72.4 220 70.9
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 1.3e-10 71.2 332 59.6
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 2.2e-10 70.5 47 76.6
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 2.2e-10 70.5 140 75.7
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.8e-10 70.1 44 72.7
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 2.8e-10 70.1 61 63.9
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 3.7e-10 69.7 232 71.1
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.8e-10 69.3 79 53.2
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 4.8e-10 69.3 60 66.7
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 6.3e-10 68.9 47 74.5
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 1.1e-09 68.2 51 68.6
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 2.4e-09 67.0 61 62.3
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 3.1e-09 66.6 51 60.8
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 4.1e-09 66.2 56 58.9
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 5.4e-09 65.9 52 63.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 7.0e-09 65.5 61 59.0
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.0e-09 65.5 61 59.0
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.0e-09 65.5 61 59.0
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 7.0e-09 65.5 61 59.0
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 7.0e-09 65.5 59 61.0
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 9.1e-09 65.1 59 61.0
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.6e-08 64.3 219 75.3
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 1.6e-08 64.3 59 57.6
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.6e-08 64.3 59 57.6
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 1.6e-08 64.3 61 57.4
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.0e-08 63.9 58 53.4
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 2.0e-08 63.9 157 70.1
FAN03G3339 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.7e-08 63.5 61 57.4
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.7e-08 63.5 62 58.1
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 3.5e-08 63.2 66 56.1
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 4.5e-08 62.8 57 56.1
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 5.9e-08 62.4 51 58.8
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 7.7e-08 62.0 59 62.7
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 1.3e-07 61.2 58 56.9
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.3e-07 61.2 58 56.9
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 1.3e-07 61.2 56 60.7
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.3e-07 61.2 55 58.2
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 1.7e-07 60.8 55 58.2
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.7e-07 60.8 42 64.3
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 2.2e-07 60.5 56 57.1
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 2.2e-07 60.5 55 54.5
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 2.9e-07 60.1 39 79.5
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 3.8e-07 59.7 58 56.9
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 5.0e-07 59.3 264 66.7
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.1e-06 58.2 61 52.5
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.1e-06 58.2 59 57.6
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.5e-06 57.8 62 53.2
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.5e-06 57.8 218 74.3
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 1.5e-06 57.8 83 53.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 5.5e-06 55.8 62 51.6
MD01G1124300 Malus domestica HOM05D004463 ORTHO05D004724 7.2e-06 55.5 59 52.5


User provided reference genes

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