Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 2.5e-231 805.1 400 100.0
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 9.3e-186 653.7 404 80.0
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.3e-182 643.3 404 78.5
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 4.8e-182 641.3 404 78.5
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 2.6e-180 635.6 403 77.7
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 3.4e-180 635.2 400 76.8
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 5.8e-180 634.4 402 77.6
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 6.5e-179 630.9 385 79.5
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 9.3e-178 627.1 401 75.8
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 6.7e-176 620.9 411 74.9
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 8.7e-176 620.5 405 75.8
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.1e-175 620.2 412 74.8
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.1e-175 620.2 400 74.0
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 3.3e-175 618.6 400 75.5
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 7.4e-175 617.5 401 75.3
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 3.7e-174 615.1 401 75.6
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 4.8e-174 614.8 404 75.7
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 6.3e-174 614.4 401 75.3
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 6.9e-173 610.9 401 74.3
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 1.2e-172 610.1 401 75.6
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 2.6e-172 609.0 404 74.8
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 4.5e-172 608.2 401 75.8
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.0e-171 607.1 407 74.7
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 1.7e-171 606.3 375 79.5
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 2.2e-171 605.9 400 75.8
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 2.9e-171 605.5 384 77.3
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 3.8e-171 605.1 401 75.1
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 6.5e-171 604.4 401 75.3
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 8.5e-171 604.0 401 76.3
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 8.5e-171 604.0 401 75.3
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 1.4e-170 603.2 404 75.2
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 3.2e-170 602.1 402 74.6
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 3.2e-170 602.1 402 75.1
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 5.5e-170 601.3 400 75.2
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 7.2e-170 600.9 404 75.2
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 9.4e-170 600.5 401 74.1
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 9.4e-170 600.5 398 74.9
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.2e-169 600.1 404 75.5
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 2.7e-169 599.0 398 73.9
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 6.1e-169 597.8 404 74.3
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 7.9e-169 597.4 402 74.6
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.0e-168 597.0 361 79.5
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.4e-168 596.7 404 74.3
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.8e-168 596.3 376 78.2
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.8e-168 596.3 405 74.6
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.8e-168 596.3 374 79.1
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 2.0e-167 592.8 427 70.7
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 3.3e-167 592.0 398 73.1
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 3.3e-167 592.0 402 71.9
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 4.8e-166 588.2 406 72.4
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 8.2e-166 587.4 372 77.2
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 1.1e-165 587.0 373 74.8
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.1e-165 587.0 374 74.1
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.8e-165 586.3 401 72.3
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 2.4e-165 585.9 403 72.2
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 9.1e-165 583.9 404 73.3
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 9.1e-165 583.9 374 74.3
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.2e-164 583.6 400 73.5
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 1.2e-164 583.6 402 72.4
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 2.0e-164 582.8 352 78.7
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 3.4e-164 582.0 387 73.4
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 3.4e-164 582.0 401 73.8
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 5.9e-164 581.3 347 78.7
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.0e-163 580.5 372 75.0
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 2.2e-163 579.3 389 73.8
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 2.2e-163 579.3 347 77.8
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.9e-163 578.9 401 69.6
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 3.8e-163 578.6 400 71.2
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 3.8e-163 578.6 400 71.2
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 3.8e-163 578.6 338 82.2
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 5.0e-163 578.2 402 71.9
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 5.0e-163 578.2 409 71.9
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 5.0e-163 578.2 403 71.7
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 6.5e-163 577.8 401 70.3
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 8.5e-163 577.4 400 73.0
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.4e-162 576.6 352 78.7
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.9e-162 576.2 369 77.5
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 4.2e-162 575.1 399 72.2
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 7.2e-162 574.3 401 69.6
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.2e-161 573.5 400 70.8
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 1.6e-161 573.2 401 72.6
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 2.7e-161 572.4 400 69.5
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.7e-161 572.4 371 76.0
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 6.1e-161 571.2 327 85.3
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 6.1e-161 571.2 420 70.0
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.0e-160 570.5 399 71.7
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 5.1e-160 568.2 403 70.7
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.5e-159 566.6 374 74.3
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 3.3e-159 565.5 404 70.5
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 9.7e-159 563.9 370 75.1
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 6.3e-158 561.2 404 71.8
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 5.3e-157 558.1 375 72.8
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 2.6e-156 555.8 334 79.0
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 6.5e-155 551.2 371 70.6
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 8.5e-155 550.8 314 83.4
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 2.7e-153 545.8 390 69.5
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 3.6e-153 545.4 344 76.2
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 3.0e-152 542.3 370 73.0
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.1e-151 540.4 360 73.3
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 1.1e-151 540.4 373 71.8
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.0e-151 539.7 418 67.9
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 4.4e-151 538.5 397 68.5
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 4.8e-150 535.0 344 75.6
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.8e-149 533.1 351 72.9
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 4.1e-149 531.9 367 71.4
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.2e-145 520.4 467 60.8
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 2.7e-145 519.2 382 68.3
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.5e-143 513.5 366 67.5
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.0e-143 513.1 403 65.5
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.3e-142 510.4 352 73.0
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.8e-142 509.2 352 73.3
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 3.1e-141 505.8 314 78.3
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 9.1e-141 504.2 404 66.1
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.2e-140 503.8 573 49.7
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 3.7e-134 482.3 292 80.8
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 2.8e-129 466.1 368 62.5
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.8e-125 453.4 346 64.7
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 2.9e-118 429.5 286 73.8
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.1e-114 417.5 360 62.8
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 3.8e-78 296.2 194 75.8
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 2.8e-73 280.0 373 45.8
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 2.9e-70 270.0 147 85.0
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 1.4e-61 241.1 211 59.2
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 9.3e-61 238.4 298 48.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 5.9e-55 219.2 136 77.9
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 1.4e-51 208.0 186 60.2
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 6.1e-44 182.6 112 77.7
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 9.1e-40 168.7 112 71.4
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 4.8e-33 146.4 370 29.2
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 8.2e-33 145.6 81 82.7
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 1.3e-30 138.3 93 73.1
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 4.4e-26 123.2 66 81.8
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 6.6e-14 82.8 53 71.7
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 2.3e-11 74.3 93 46.2
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 3.4e-10 70.5 45 66.7
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 4.9e-09 66.6 40 75.0


User provided reference genes

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