Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.0e-201 706.4 344 100.0
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 6.6e-188 660.6 344 93.3
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 6.8e-169 597.4 341 83.0
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.5e-168 596.3 341 82.7
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.0e-168 595.9 341 82.1
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 4.4e-168 594.7 341 82.4
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.7e-167 592.8 341 82.1
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.9e-167 592.0 341 81.5
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.7e-167 591.7 340 81.8
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.1e-166 590.1 341 81.8
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.4e-166 589.7 340 81.5
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.4e-166 589.0 341 82.4
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 3.2e-166 588.6 343 81.6
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.1e-166 587.4 341 81.2
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.2e-165 586.6 341 82.4
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.0e-165 584.3 340 80.9
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.7e-164 582.8 341 80.1
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 1.7e-164 582.8 339 80.8
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 5.1e-164 581.3 341 81.2
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 6.6e-164 580.9 341 81.2
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 2.5e-163 578.9 341 79.8
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 4.3e-163 578.2 344 78.5
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 7.3e-163 577.4 341 79.5
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.2e-162 576.6 340 80.6
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.2e-162 576.6 340 79.7
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.6e-162 576.2 361 77.6
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.6e-162 576.2 341 80.4
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.1e-162 575.9 341 79.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.6e-162 575.1 340 80.0
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 4.7e-162 574.7 341 81.2
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 4.7e-162 574.7 341 79.5
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 6.2e-162 574.3 339 79.6
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 6.2e-162 574.3 339 79.6
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 6.2e-162 574.3 341 80.1
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 8.1e-162 573.9 341 78.9
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 8.1e-162 573.9 341 79.2
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.1e-161 573.5 341 78.9
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.1e-161 573.5 341 78.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.1e-161 573.5 341 80.4
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.4e-161 573.2 339 79.6
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-161 572.8 341 78.6
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.8e-161 572.8 341 79.8
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.8e-161 572.8 341 78.6
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.3e-161 572.4 341 78.6
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.3e-161 572.4 340 80.3
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.0e-161 571.6 341 77.4
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 5.2e-161 571.2 341 79.5
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 6.8e-161 570.9 339 79.9
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.2e-160 570.1 341 78.3
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 1.2e-160 570.1 341 77.7
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.2e-160 570.1 341 78.6
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.5e-160 569.7 358 76.5
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 2.0e-160 569.3 341 78.3
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 2.0e-160 569.3 341 78.0
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.0e-160 569.3 341 78.3
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.0e-160 569.3 341 78.3
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.6e-160 568.9 341 78.3
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.6e-160 568.9 341 77.4
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.6e-160 568.9 341 78.9
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 2.6e-160 568.9 357 76.5
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.4e-160 568.5 341 78.9
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.4e-160 568.5 341 79.5
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 3.4e-160 568.5 341 79.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 3.4e-160 568.5 341 79.5
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 5.8e-160 567.8 341 79.5
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 5.8e-160 567.8 341 78.6
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 9.9e-160 567.0 342 78.1
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.3e-159 566.6 362 76.0
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 1.7e-159 566.2 341 78.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 2.2e-159 565.8 341 77.4
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.9e-159 565.5 339 79.1
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 4.9e-159 564.7 341 78.6
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 4.9e-159 564.7 341 77.1
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 8.3e-159 563.9 340 77.9
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 8.3e-159 563.9 341 78.9
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.4e-158 563.1 339 78.8
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.4e-158 562.4 341 76.5
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 4.1e-158 561.6 341 76.8
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 5.4e-158 561.2 341 77.7
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 5.4e-158 561.2 341 76.8
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.2e-157 560.1 339 77.9
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.6e-157 559.7 341 76.5
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.7e-157 558.9 341 77.1
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 3.5e-157 558.5 340 77.4
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 6.0e-157 557.8 341 77.7
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.0e-157 557.8 355 74.9
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 6.0e-157 557.8 340 76.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 7.8e-157 557.4 343 76.1
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 7.8e-157 557.4 344 75.3
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 7.8e-157 557.4 344 75.3
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 7.8e-157 557.4 344 75.6
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.0e-156 557.0 343 76.7
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.0e-156 557.0 341 76.5
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-156 556.2 340 76.8
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.7e-156 556.2 357 74.8
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 2.3e-156 555.8 344 75.0
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.3e-156 555.8 357 74.8
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.9e-156 555.1 374 71.4
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 6.6e-156 554.3 344 74.7
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 8.6e-156 553.9 341 76.0
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.1e-155 553.5 344 75.3
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 1.1e-155 553.5 344 74.7
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.9e-155 552.7 344 74.4
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 3.3e-155 552.0 341 75.7
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 7.3e-155 550.8 357 74.5
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.2e-154 550.1 344 74.7
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 4.7e-154 548.1 344 74.7
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.4e-153 546.6 340 76.5
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 1.4e-153 546.6 341 74.2
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 8.9e-153 543.9 341 75.4
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 2.0e-152 542.7 340 74.7
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.0e-152 542.7 342 74.9
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 4.4e-152 541.6 342 75.4
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 4.4e-152 541.6 347 75.2
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 5.8e-152 541.2 344 74.1
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 7.6e-152 540.8 340 74.1
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 3.8e-151 538.5 340 72.6
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.4e-150 535.8 337 75.7
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 4.2e-150 535.0 341 74.8
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.4e-150 534.6 340 74.1
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 7.1e-150 534.3 340 73.2
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 9.3e-150 533.9 381 68.8
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 4.6e-149 531.6 340 72.4
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.3e-148 530.0 343 73.2
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 5.1e-148 528.1 342 71.3
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 8.7e-148 527.3 341 75.1
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.5e-147 526.6 341 74.5
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 1.6e-146 523.1 341 71.8
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.4e-145 520.0 423 61.7
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 4.0e-145 518.5 341 73.9
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.2e-144 516.9 341 73.0
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.4e-143 511.1 343 70.3
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 2.1e-141 506.1 318 74.2
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 7.9e-141 504.2 340 70.0
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 7.9e-133 477.6 287 77.4
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.1e-131 473.8 340 67.9
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.5e-131 472.6 342 64.9
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 8.1e-130 467.6 344 67.7
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 2.7e-125 452.6 344 62.8
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 3.3e-123 445.7 302 73.8
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 3.4e-120 435.6 340 63.2
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 7.2e-118 427.9 340 58.5
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 2.5e-115 419.5 358 58.7
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.3e-115 419.1 358 59.8
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.7e-111 406.8 293 68.6
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.8e-100 370.2 210 83.3
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-98 364.0 235 72.8
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.8e-98 362.8 226 78.3
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 6.7e-92 341.7 216 74.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.3e-90 337.4 198 78.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.1e-89 332.4 198 77.8
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.2e-85 320.9 425 41.2
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 4.4e-83 312.4 351 46.2
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 4.1e-81 305.8 329 47.7
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.6e-80 303.9 327 47.7
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 4.0e-76 289.3 222 64.0
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 9.5e-70 268.1 226 63.3
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 2.3e-68 263.5 172 72.1
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.2e-65 253.1 258 53.5
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.0e-64 250.4 174 67.2
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 2.5e-62 243.4 155 72.9
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.4e-57 225.7 178 62.9
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.0e-57 225.3 151 70.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 3.1e-52 209.9 126 77.0
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.5e-51 205.3 335 38.8
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.4e-50 202.2 124 76.6
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.1e-48 197.2 216 50.5
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.5e-48 196.4 341 38.1
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.1e-47 192.6 121 72.7
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.3e-46 189.9 126 71.4
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-38 164.9 126 59.5
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.3e-34 151.4 88 78.4
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 3.6e-29 133.3 87 73.6
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.8e-29 132.9 124 56.5
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.4e-28 130.6 113 58.4
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.7e-24 117.1 71 77.5
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 2.2e-18 97.4 52 84.6
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 1.0e-15 88.6 87 47.1
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 5.1e-15 86.3 87 47.1
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 6.7e-07 59.3 35 68.6


User provided reference genes

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