Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01095 Eucalyptus grandis HOM05D007211 ORTHO05D009060 2.9e-41 171.4 83 100.0
CiPaw.06G168700 Carya illinoinensis HOM05D007211 ORTHO05D009060 6.9e-35 150.2 80 86.2
Gorai.013G048100 Gossypium raimondii HOM05D007211 ORTHO05D009060 9.1e-35 149.8 81 87.7
Thecc.02G110400 Theobroma cacao HOM05D007211 ORTHO05D009060 9.1e-35 149.8 82 84.1
Gohir.A13G044300 Gossypium hirsutum HOM05D007211 ORTHO05D009060 1.5e-34 149.1 80 87.5
COL.COLO4_32576 Corchorus olitorius HOM05D007211 ORTHO05D009060 2.0e-34 148.7 80 85.0
Haze_10197 Corylus avellana HOM05D007211 ORTHO05D009060 2.0e-34 148.7 83 84.3
Gohir.D13G043400 Gossypium hirsutum HOM05D007211 ORTHO05D009060 2.6e-34 148.3 81 86.4
PGR142G3039 Punica granatum HOM05D007211 ORTHO05D009060 2.6e-34 148.3 83 84.3
QL11p032854 Quercus lobata HOM05D007211 ORTHO05D009060 1.3e-33 146.0 80 85.0
Sabra09G0072500 Salix brachista HOM05D007211 ORTHO05D009060 3.8e-33 144.4 83 84.3
Duzib248G0207 Durio zibethinus HOM05D007211 ORTHO05D009060 5.0e-33 144.1 80 83.8
ClCG05G010330 Citrullus lanatus HOM05D007211 ORTHO05D009060 6.5e-33 143.7 80 82.5
Ciclev10029710m.g Citrus clementina HOM05D007211 ORTHO05D009060 6.5e-33 143.7 83 80.7
MELO3C019551.2 Cucumis melo HOM05D007211 ORTHO05D009060 6.5e-33 143.7 80 83.8
CsaV3_3G018160 Cucumis sativus L. HOM05D007211 ORTHO05D009060 6.5e-33 143.7 83 80.7
Potri.001G299200 Populus trichocarpa HOM05D007211 ORTHO05D009060 1.1e-32 142.9 83 80.7
Potri.009G094200 Populus trichocarpa HOM05D007211 ORTHO05D009060 4.2e-32 141.0 83 81.9
CANSAT25G1462 Cannabis sativa HOM05D007211 ORTHO05D009060 5.5e-32 140.6 80 80.0
CANSAT25G3598 Cannabis sativa HOM05D007211 ORTHO05D009060 5.5e-32 140.6 80 80.0
Lsat_1_v5_gn_9_112060 Lactuca sativa HOM05D007211 ORTHO05D009060 7.2e-32 140.2 82 79.3
Atru.chr5.2471 Acer truncatum HOM05D007211 ORTHO05D009060 9.4e-32 139.8 83 80.7
Nn1g04662 Nelumbo nucifera HOM05D007211 ORTHO05D009060 9.4e-32 139.8 80 80.0
HanXRQChr03g0068751 Helianthus annuus HOM05D007211 ORTHO05D009060 2.1e-31 138.7 82 79.3
Sed0014592 Sechium edule HOM05D007211 ORTHO05D009060 2.1e-31 138.7 80 78.8
Manes.10G075811 Manihot esculenta HOM05D007211 ORTHO05D009060 2.7e-31 138.3 83 77.1
Manes.10G076037 Manihot esculenta HOM05D007211 ORTHO05D009060 2.7e-31 138.3 83 77.1
TWI79G1551 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 3.6e-31 137.9 81 74.1
TWI31G1006 Tripterygium wilfordii HOM05D007211 ORTHO05D009060 4.7e-31 137.5 81 75.3
CSS0010427 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.0e-30 136.3 83 74.7
CSS0021869 Camellia sinensis var. sinensis HOM05D007211 ORTHO05D009060 1.0e-30 136.3 83 74.7
Prupe.8G136900 Prunus persica HOM05D007211 ORTHO05D009060 1.0e-30 136.3 80 77.5
GSVIVG01037902001 Vitis vinifera HOM05D007211 ORTHO05D009060 1.0e-30 136.3 80 76.2
Cpa.g.sc106.108 Carica papaya HOM05D007211 ORTHO05D009060 1.4e-30 136.0 80 77.5
MD00G1109400 Malus domestica HOM05D007211 ORTHO05D009060 1.4e-30 136.0 80 78.8
MD04G1005100 Malus domestica HOM05D007211 ORTHO05D009060 1.4e-30 136.0 80 78.8
ECA240G2095 Erigeron canadensis HOM05D007211 ORTHO05D009060 3.0e-30 134.8 82 76.8
Hund00155 Selenicereus undatus HOM05D000364 ORTHO05D009060 6.7e-30 133.7 80 73.8
TAR376G0209 Trochodendron aralioides HOM05D007211 ORTHO05D009060 1.5e-29 132.5 80 75.0
Aqoxy6G02839 Aquilegia oxysepala HOM05D007211 ORTHO05D009060 2.0e-29 132.1 80 76.2
PSO541G5220 Papaver somniferum HOM05D007211 ORTHO05D009060 2.0e-29 132.1 81 75.3
RcHm_v2.0_Chr6g0254661 Rosa chinensis HOM05D007211 ORTHO05D009060 2.0e-29 132.1 83 74.7
RcHm_v2.0_Chr6g0254711 Rosa chinensis HOM05D007211 ORTHO05D009060 2.6e-29 131.7 83 74.7
Actinidia34396 Actinidia chinensis HOM05D007211 ORTHO05D009060 4.4e-29 131.0 83 73.5
Migut.B00396 Erythranthe guttata HOM05D007211 ORTHO05D009060 7.4e-29 130.2 80 73.8
Sc14g0001880 Simmondsia chinensis HOM05D007211 ORTHO05D009060 9.7e-29 129.8 80 71.2
arahy.Tifrunner.gnm1.ann1.0PG00T Arachis hypogaea HOM05D007211 ORTHO05D009060 1.3e-28 129.4 82 73.2
arahy.Tifrunner.gnm1.ann1.YF4EPK Arachis hypogaea HOM05D007211 ORTHO05D009060 1.3e-28 129.4 82 73.2
PGSC0003DMG400025763 Solanum tuberosum HOM05D007211 ORTHO05D009060 1.3e-28 129.4 80 75.0
Hma1.2p1_1518F.1_g288450 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 2.2e-28 128.6 80 75.0
unitig_0.g876 Utricularia gibba HOM05D007211 ORTHO05D009060 2.2e-28 128.6 83 74.7
Psat4g228560 Pisum sativum HOM05D007211 ORTHO05D009060 2.8e-28 128.3 83 72.3
Sopen01g049710 Solanum pennellii HOM05D007211 ORTHO05D009060 2.8e-28 128.3 80 73.8
AUR62010326 Chenopodium quinoa HOM05D007211 ORTHO05D009060 3.7e-28 127.9 80 72.5
AUR62039062 Chenopodium quinoa HOM05D007211 ORTHO05D009060 3.7e-28 127.9 80 71.2
Lj1g0022136 Lotus japonicus HOM05D007211 ORTHO05D009060 4.8e-28 127.5 80 73.8
Rhsim11G0158600 Rhododendron simsii HOM05D007211 ORTHO05D009060 4.8e-28 127.5 83 71.1
arahy.Tifrunner.gnm1.ann1.UEWU3Q Arachis hypogaea HOM05D007211 ORTHO05D009060 6.3e-28 127.1 80 73.8
BcaC05g28470 Brassica carinata HOM05D007211 ORTHO05D009060 6.3e-28 127.1 80 76.2
BolC5t33279H Brassica oleracea HOM05D007211 ORTHO05D009060 6.3e-28 127.1 80 76.2
vmacro01995 Vaccinium macrocarpon HOM05D007211 ORTHO05D009060 8.2e-28 126.7 83 71.1
A05p30110 Brassica napus HOM05D002228 ORTHO05D002347 1.1e-27 126.3 80 75.0
C05p45540 Brassica napus HOM05D007211 ORTHO05D009060 1.1e-27 126.3 80 75.0
BraA05t21851Z Brassica rapa HOM05D002228 ORTHO05D002347 1.1e-27 126.3 80 75.0
FvH4_2g04840 Fragaria vesca HOM05D007211 ORTHO05D009060 1.1e-27 126.3 80 73.8
FAN15G0614 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.1e-27 126.3 80 73.8
FAN24G1282 Fragaria x ananassa HOM05D000062 ORTHO05D000043 1.1e-27 126.3 80 73.8
Nitab4.5_0001480g0150 Nicotiana tabacum HOM05D007211 ORTHO05D009060 1.4e-27 125.9 80 72.5
Oeu013758.1 Olea europaea HOM05D007211 ORTHO05D009060 1.4e-27 125.9 80 71.2
AT3G19508 Arabidopsis thaliana HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 75.0
Ca_24347_v3 Cicer arietinum L. HOM05D007211 ORTHO05D009060 1.8e-27 125.6 80 73.8
FAN27G1079 Fragaria x ananassa HOM05D007211 ORTHO05D009060 1.8e-27 125.6 83 72.3
AL3G32910 Arabidopsis lyrata HOM05D007211 ORTHO05D009060 2.4e-27 125.2 80 75.0
DCAR_029091 Daucus carota HOM05D007211 ORTHO05D009060 2.4e-27 125.2 80 72.5
CARHR094930 Cardamine hirsuta HOM05D007211 ORTHO05D009060 3.1e-27 124.8 80 73.8
Oeu029529.1 Olea europaea HOM05D007211 ORTHO05D009060 4.1e-27 124.4 80 71.2
TPR.G21608 Trifolium pratense HOM05D007211 ORTHO05D009060 4.1e-27 124.4 80 72.5
EL10Ac9g22259 Beta vulgaris HOM05D007211 ORTHO05D009060 5.3e-27 124.0 80 67.5
MD05G1023600 Malus domestica HOM05D007211 ORTHO05D009060 7.0e-27 123.6 80 72.5
Rhsim11G0157000 Rhododendron simsii HOM05D007211 ORTHO05D009060 7.0e-27 123.6 83 68.7
Sp3g17560 Schrenkiella parvula HOM05D007211 ORTHO05D009060 7.0e-27 123.6 80 72.5
BcaC09g48904 Brassica carinata HOM05D007211 ORTHO05D009060 1.2e-26 122.9 80 71.2
A01p35210 Brassica napus HOM05D007211 ORTHO05D009060 1.2e-26 122.9 80 71.2
BraA01t03602Z Brassica rapa HOM05D007211 ORTHO05D009060 1.2e-26 122.9 80 71.2
Medtr5g004970 Medicago truncatula HOM05D007211 ORTHO05D009060 1.2e-26 122.9 80 71.2
Carub.0003s1931 Capsella rubella HOM05D007211 ORTHO05D009060 2.0e-26 122.1 80 72.5
BcaC09g48910 Brassica carinata HOM05D002228 ORTHO05D002347 2.6e-26 121.7 80 70.0
C01p44630 Brassica napus HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 70.0
BolC1t04431H Brassica oleracea HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 70.0
Cc02_g19360 Coffea canephora HOM05D007211 ORTHO05D009060 2.6e-26 121.7 80 68.8
Aa31LG8G6260 Aethionema arabicum HOM05D007211 ORTHO05D009060 3.5e-26 121.3 80 72.5
BcaB06g26010 Brassica carinata HOM05D007211 ORTHO05D009060 3.5e-26 121.3 80 71.2
Lalb_Chr09g0319591 Lupinus albus HOM05D007211 ORTHO05D009060 2.2e-25 118.6 80 71.2
Glyma.01G243800 Glycine max HOM05D007211 ORTHO05D009060 3.8e-25 117.9 80 70.0
Cfa004601 Carpinus fangiana HOM05D007211 ORTHO05D009060 1.2e-23 112.8 80 66.2
Nitab4.5_0004326g0030 Nicotiana tabacum HOM05D007211 ORTHO05D009060 4.7e-23 110.9 66 77.3
Phvul.002G053100 Phaseolus vulgaris HOM05D007211 ORTHO05D009060 1.8e-22 109.0 80 65.0
MD10G1099000 Malus domestica HOM05D007211 ORTHO05D009060 2.3e-22 108.6 68 73.5
CAN.G606.15 Capsicum annuum HOM05D007211 ORTHO05D009060 1.1e-21 106.3 65 75.4
Os01g0342800 Oryza sativa ssp. japonica HOM05D007211 ORTHO05D009060 1.3e-20 102.8 77 68.8
CDE07G1397 Ceratophyllum demersum HOM05D007211 ORTHO05D009060 6.3e-20 100.5 80 62.5
Sabra16G0187800 Salix brachista HOM05D007211 ORTHO05D009060 5.3e-19 97.4 57 80.7
MBI16_g16358_MAGBIO Magnolia biondii HOM05D007211 ORTHO05D009060 1.7e-17 92.4 61 70.5
Zm00001eb307960 Zea mays HOM05D007211 ORTHO05D009060 2.9e-17 91.7 79 60.8
BcaB04g20701 Brassica carinata HOM05D002228 ORTHO05D002347 3.8e-17 91.3 89 51.7
BcaC09g48905 Brassica carinata HOM05D007211 ORTHO05D009060 3.2e-16 88.2 85 56.5
BcaC09g48902 Brassica carinata HOM05D007211 ORTHO05D009060 2.7e-15 85.1 105 43.8
AagrBONN_evm.TU.Sc2ySwM_362.2090 Anthoceros agrestis HOM05D007211 ORTHO05D009060 4.7e-15 84.3 80 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1547 Anthoceros agrestis HOM05D007211 ORTHO05D009060 2.3e-14 82.0 80 53.8
BcaC09g48907 Brassica carinata HOM05D007211 ORTHO05D009060 1.4e-11 72.8 51 64.7
CBR_g972 Chara braunii HOM05D007211 ORTHO05D009060 2.7e-10 68.6 77 41.6
Pp3c17_14820 Physcomitrium patens HOM05D007211 ORTHO05D009060 1.3e-09 66.2 60 51.7
Duzib248G0756 Durio zibethinus HOM05D007211 ORTHO05D009060 3.2e-08 61.6 39 74.4
AagrBONN_evm.TU.Sc2ySwM_344.3864 Anthoceros agrestis HOM05D007211 ORTHO05D009060 7.2e-08 60.5 58 53.4
MCO09G621 Micromonas commoda HOM05D007211 ORTHO05D009060 5.2e-06 54.3 65 41.5
Hma1.2p1_2341F.1_g320300 Hydrangea macrophylla HOM05D007211 ORTHO05D009060 8.8e-06 53.5 80 41.2


User provided reference genes

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