Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 4.8e-196 687.6 332 100.0
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 6.6e-145 517.7 343 74.9
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 5.6e-144 514.6 336 75.3
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 2.1e-143 512.7 340 73.2
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 6.2e-143 511.1 340 72.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 1.4e-142 510.0 352 72.7
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 1.8e-142 509.6 350 72.9
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 9.0e-142 507.3 349 72.8
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.2e-141 506.9 333 74.2
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 1.2e-141 506.9 342 74.0
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.5e-141 506.5 349 72.8
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.5e-141 506.5 349 72.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 1.5e-141 506.5 350 72.6
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 2.0e-141 506.1 338 73.1
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 2.6e-141 505.8 337 72.4
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 5.8e-141 504.6 357 72.5
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 9.9e-141 503.8 338 73.4
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.3e-140 503.4 353 72.5
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 4.9e-140 501.5 340 73.8
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 4.9e-140 501.5 349 72.8
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 8.4e-140 500.7 332 74.1
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 1.1e-139 500.4 344 73.0
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.1e-139 500.4 344 71.8
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.1e-139 500.4 357 70.9
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.1e-139 500.4 334 72.8
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 1.4e-139 500.0 337 71.8
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 5.4e-139 498.0 354 70.3
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 5.4e-139 498.0 356 71.3
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 7.1e-139 497.7 327 75.5
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 9.3e-139 497.3 356 71.1
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.6e-138 496.5 341 71.8
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.1e-138 496.1 338 72.5
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 2.7e-138 495.7 360 70.6
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 6.0e-138 494.6 351 70.4
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.0e-137 493.8 346 69.9
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.0e-137 493.8 363 68.6
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.7e-137 493.0 330 73.3
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.0e-137 492.3 350 70.0
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 3.0e-137 492.3 325 72.6
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 3.9e-137 491.9 325 72.3
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 6.6e-137 491.1 354 70.1
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.5e-136 490.0 343 70.6
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.5e-136 490.0 343 70.6
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.5e-136 490.0 334 71.6
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.3e-136 488.8 339 71.7
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 7.3e-136 487.6 341 70.4
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.3e-135 486.9 348 69.5
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.3e-135 486.9 373 67.6
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 1.6e-135 486.5 335 71.9
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.8e-135 485.7 354 69.2
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.8e-135 485.7 343 70.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.6e-135 485.3 372 67.7
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 8.1e-135 484.2 336 71.1
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 1.1e-134 483.8 344 70.6
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.4e-134 483.4 350 68.9
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.4e-134 482.6 353 68.8
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.1e-134 482.3 338 71.6
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 9.0e-134 480.7 355 67.9
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.2e-133 480.3 376 65.2
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.6e-133 479.2 348 69.0
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 4.5e-133 478.4 343 69.7
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 5.8e-133 478.0 345 68.4
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 5.8e-133 478.0 348 68.7
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 1.7e-132 476.5 336 71.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.7e-132 476.5 335 72.2
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 2.9e-132 475.7 338 70.7
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.9e-132 475.7 339 70.2
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.8e-132 475.3 349 69.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 6.4e-132 474.6 344 69.5
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.9e-131 473.0 338 71.0
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.9e-131 473.0 345 69.0
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.9e-131 473.0 338 71.0
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.9e-131 473.0 362 67.7
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 2.4e-131 472.6 345 69.6
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 3.2e-131 472.2 338 69.8
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 5.4e-131 471.5 348 69.8
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 5.4e-131 471.5 345 68.1
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 7.1e-131 471.1 345 68.1
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 9.3e-131 470.7 345 69.0
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.6e-130 469.9 351 68.9
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.1e-130 469.5 345 68.7
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.5e-130 468.8 345 67.2
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 4.6e-130 468.4 336 68.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.0e-130 468.0 376 64.9
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 7.9e-130 467.6 349 67.9
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 3.9e-129 465.3 345 66.7
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.5e-128 463.4 350 67.7
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.3e-128 461.8 360 66.4
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 4.3e-128 461.8 342 68.4
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.3e-127 460.3 349 66.8
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 1.3e-127 460.3 353 66.9
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.6e-127 459.9 351 67.5
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.1e-127 459.5 349 66.8
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 8.1e-127 457.6 337 68.5
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-126 456.8 337 68.5
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 1.4e-126 456.8 336 69.3
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.8e-126 456.4 333 68.8
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 9.0e-126 454.1 332 68.4
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 9.0e-126 454.1 351 67.2
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.2e-125 453.8 344 65.4
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.2e-125 453.8 365 65.2
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 3.4e-125 452.2 337 67.7
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.2e-123 445.3 334 69.2
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.1e-122 443.0 326 69.6
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.0e-121 440.7 345 66.1
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.0e-121 440.7 348 62.9
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.3e-121 439.5 323 67.5
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.9e-121 438.7 359 63.2
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 2.5e-120 436.0 373 61.4
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.7e-119 432.2 340 65.0
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 6.2e-119 431.4 342 63.7
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.4e-118 430.3 346 64.7
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.8e-118 429.9 366 60.1
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.8e-118 429.9 333 65.5
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.5e-117 426.8 319 69.3
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.8e-117 424.9 374 58.3
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 3.8e-116 422.2 408 56.4
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 9.3e-115 417.5 327 66.1
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.7e-114 416.0 330 65.8
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 3.5e-114 415.6 305 67.5
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 7.9e-114 414.5 316 68.0
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 8.7e-113 411.0 354 61.0
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 2.5e-112 409.5 327 63.9
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 2.8e-111 406.0 517 47.4
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.4e-109 399.1 355 59.7
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 6.5e-108 394.8 422 52.6
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 2.1e-106 389.8 354 57.6
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.9e-104 383.3 404 52.5
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 8.2e-103 377.9 322 60.2
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 5.1e-97 358.6 364 53.0
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.6e-96 356.3 326 58.0
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.2e-95 353.2 361 53.7
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 3.7e-95 352.4 308 59.7
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 6.3e-87 325.1 343 52.2
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.5e-83 313.2 391 46.8
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.3e-79 300.8 367 46.6
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 7.2e-75 285.0 243 64.6
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 7.2e-75 285.0 243 64.6
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.0e-73 281.2 230 62.2
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 7.5e-72 275.0 301 52.5
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.8e-71 273.1 374 42.8
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 6.3e-71 271.9 369 44.4
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.8e-70 270.4 156 79.5
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 9.5e-67 258.1 341 43.1
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-65 254.6 201 66.2
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 4.9e-63 245.7 397 38.3
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 7.0e-62 241.9 237 52.3
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 7.3e-59 231.9 226 61.1
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 3.0e-57 226.5 204 61.3
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.9e-54 217.2 183 62.8
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 4.3e-51 206.1 160 66.2
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 2.8e-50 203.4 135 72.6
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 8.6e-44 181.8 128 63.3
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 4.3e-35 152.9 100 72.0
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.7e-34 149.4 358 32.4
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.0e-32 144.1 122 59.0
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 8.4e-31 138.7 334 32.3
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.3e-28 131.3 72 80.6
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 2.8e-18 97.1 81 61.7
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 9.9e-16 88.6 63 66.7
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.3e-07 61.6 33 75.8


User provided reference genes

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