Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00992 Eucalyptus grandis HOM05D006343 ORTHO05D005694 4.6e-150 534.6 289 100.0
Sabra14G0063500 Salix brachista HOM05D006343 ORTHO05D005694 6.8e-37 158.7 317 43.8
Potri.002G161700 Populus trichocarpa HOM05D006343 ORTHO05D005694 2.2e-35 153.7 318 43.7
Manes.01G254700 Manihot esculenta HOM05D006343 ORTHO05D005694 4.6e-33 146.0 323 42.1
Potri.014G087500 Populus trichocarpa HOM05D006343 ORTHO05D005694 1.0e-32 144.8 315 40.6
Manes.05G031900 Manihot esculenta HOM05D006343 ORTHO05D005694 1.7e-32 144.1 323 42.1
Ciclev10021525m.g Citrus clementina HOM05D006343 ORTHO05D005694 5.0e-32 142.5 310 40.0
Dinv43841 Davidia involucrata HOM05D006343 ORTHO05D005694 2.1e-30 137.1 308 40.9
TAR629G3314 Trochodendron aralioides HOM05D006343 ORTHO05D005694 6.8e-29 132.1 306 38.9
CiPaw.02G033200 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.5e-28 131.0 327 38.2
Sabra02G0128600 Salix brachista HOM05D006343 ORTHO05D005694 1.7e-27 127.5 311 40.5
Nitab4.5_0001040g0020 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.2e-26 123.2 322 35.1
Oeu055797.1 Olea europaea HOM05D006343 ORTHO05D005694 1.2e-25 121.3 316 37.0
Actinidia20887 Actinidia chinensis HOM05D006343 ORTHO05D005694 2.1e-25 120.6 306 35.9
Atru.chr5.528 Acer truncatum HOM05D006343 ORTHO05D005694 1.0e-24 118.2 321 40.2
Nitab4.5_0001655g0110 Nicotiana tabacum HOM05D006343 ORTHO05D005694 3.9e-24 116.3 328 33.8
CANSAT56G2487 Cannabis sativa HOM05D006343 ORTHO05D005694 5.1e-24 115.9 253 36.0
CiPaw.01G064000 Carya illinoinensis HOM05D006343 ORTHO05D005694 1.9e-23 114.0 257 37.4
GSVIVG01026998001 Vitis vinifera HOM05D006343 ORTHO05D005694 2.5e-23 113.6 244 38.5
Cpa.g.sc11.35 Carica papaya HOM05D006343 ORTHO05D005694 4.3e-23 112.8 338 37.9
SalBow6G3791 Salvia bowleyana HOM05D006343 ORTHO05D005694 4.3e-23 112.8 303 35.3
Oeu035731.1 Olea europaea HOM05D006343 ORTHO05D005694 9.5e-23 111.7 299 33.4
Rhsim01G0164400 Rhododendron simsii HOM05D006343 ORTHO05D005694 4.7e-22 109.4 325 36.0
Duzib138G0695 Durio zibethinus HOM05D006343 ORTHO05D005694 8.1e-22 108.6 236 38.1
Oeu035725.1 Olea europaea HOM05D003054 ORTHO05D003376 2.3e-21 107.1 244 35.2
Oeu035719.1 Olea europaea HOM05D003054 ORTHO05D003376 5.2e-21 105.9 250 34.0
Hma1.2p1_0702F.1_g206150 Hydrangea macrophylla HOM05D006343 ORTHO05D005694 6.8e-21 105.5 300 34.7
COL.COLO4_12739 Corchorus olitorius HOM05D006343 ORTHO05D005694 1.2e-20 104.8 316 36.4
CsaV3_6G000720 Cucumis sativus L. HOM05D006343 ORTHO05D005694 1.2e-20 104.8 321 36.1
Glyma.07G068200 Glycine max HOM05D006343 ORTHO05D005694 1.2e-20 104.8 333 36.6
Prupe.2G173800 Prunus persica HOM05D006343 ORTHO05D005694 5.8e-20 102.4 312 33.7
QL04p054168 Quercus lobata HOM05D006343 ORTHO05D005694 9.9e-20 101.7 248 36.3
Dinv32502 Davidia involucrata HOM05D006343 ORTHO05D005694 6.4e-19 99.0 237 37.1
Oeu035722.1 Olea europaea HOM05D006343 ORTHO05D005694 6.4e-19 99.0 248 34.7
MSTRG.18339 Avicennia marina HOM05D006343 ORTHO05D005694 1.1e-18 98.2 307 32.9
Rhsim01G0164000 Rhododendron simsii HOM05D006343 ORTHO05D005694 1.1e-18 98.2 327 34.6
vmacro20913 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 4.1e-18 96.3 325 34.5
FvH4_7g14980 Fragaria vesca HOM05D006343 ORTHO05D005694 7.1e-18 95.5 242 35.5
FAN01G0301 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.1e-18 95.5 242 35.5
FAN06G0921 Fragaria x ananassa HOM05D006343 ORTHO05D005694 7.1e-18 95.5 242 35.5
MD01G1067400 Malus domestica HOM05D006343 ORTHO05D005694 2.1e-17 94.0 324 31.2
Nn1g01591 Nelumbo nucifera HOM05D006343 ORTHO05D005694 2.7e-17 93.6 236 35.2
FAN10G3829 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.5e-17 93.2 242 35.1
RcHm_v2.0_Chr1g0357021 Rosa chinensis HOM05D006343 ORTHO05D005694 3.5e-17 93.2 325 31.4
Sed0018743 Sechium edule HOM05D006343 ORTHO05D005694 3.5e-17 93.2 312 37.2
FAN10G0914 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.6e-17 92.8 242 35.1
VMungo0331G0061 Vigna mungo HOM05D006343 ORTHO05D005694 4.6e-17 92.8 326 35.0
MSTRG.12522 Avicennia marina HOM05D006343 ORTHO05D005694 1.0e-16 91.7 309 32.0
Glyma.16G034200 Glycine max HOM05D006343 ORTHO05D005694 2.3e-16 90.5 349 36.1
Oeu035728.1 Olea europaea HOM05D006343 ORTHO05D005694 3.0e-16 90.1 298 33.9
Nitab4.5_0003369g0030 Nicotiana tabacum HOM05D006343 ORTHO05D005694 5.1e-16 89.4 316 29.1
CAN.G650.25 Capsicum annuum HOM05D006343 ORTHO05D005694 6.6e-16 89.0 251 32.3
PGR042G0313 Punica granatum HOM05D006343 ORTHO05D005694 1.1e-15 88.2 196 35.7
vmacro20912 Vaccinium macrocarpon HOM05D006343 ORTHO05D005694 1.9e-15 87.4 249 33.3
Gorai.007G101600 Gossypium raimondii HOM05D006343 ORTHO05D005694 2.5e-15 87.0 319 35.7
Phvul.010G101000 Phaseolus vulgaris HOM05D006343 ORTHO05D005694 2.5e-15 87.0 324 36.4
FAN03G1905 Fragaria x ananassa HOM05D006343 ORTHO05D005694 3.3e-15 86.7 239 34.7
Lj3g0021957 Lotus japonicus HOM05D006343 ORTHO05D005694 5.6e-15 85.9 244 34.4
Lsat_1_v5_gn_7_4060 Lactuca sativa HOM05D006343 ORTHO05D005694 1.6e-14 84.3 331 29.0
TWI23G0998 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.6e-14 84.3 231 36.8
Rhsim06G0236200 Rhododendron simsii HOM05D006343 ORTHO05D005694 2.1e-14 84.0 307 33.9
Lalb_Chr17g0339411 Lupinus albus HOM05D006343 ORTHO05D005694 2.8e-14 83.6 262 32.4
MELO3C021196.2 Cucumis melo HOM05D006343 ORTHO05D005694 3.6e-14 83.2 321 34.3
FvH4_7g14870 Fragaria vesca HOM05D006343 ORTHO05D005694 4.7e-14 82.8 324 30.2
MD07G1133500 Malus domestica HOM05D006343 ORTHO05D005694 4.7e-14 82.8 319 31.0
FAN06G4353 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.1e-14 82.0 325 30.2
FAN10G3557 Fragaria x ananassa HOM05D006343 ORTHO05D005694 8.1e-14 82.0 326 31.0
Nitab4.5_0002749g0010 Nicotiana tabacum HOM05D006343 ORTHO05D005694 8.1e-14 82.0 318 28.9
Lsat_1_v5_gn_7_4100 Lactuca sativa HOM05D006343 ORTHO05D005694 1.1e-13 81.6 240 33.3
Potri.014G099800 Populus trichocarpa HOM05D006343 ORTHO05D005694 3.1e-13 80.1 254 30.7
FAN03G1311 Fragaria x ananassa HOM05D006343 ORTHO05D005694 4.0e-13 79.7 326 29.4
DCAR_015701 Daucus carota HOM05D006343 ORTHO05D005694 6.8e-13 79.0 294 31.0
Gohir.D11G095300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.5e-12 77.8 324 35.2
FAN06G0140 Fragaria x ananassa HOM05D006343 ORTHO05D005694 2.6e-12 77.0 322 29.8
CSS0004449 Camellia sinensis var. sinensis HOM05D006343 ORTHO05D005694 5.8e-12 75.9 320 30.9
CAN.G2424.1 Capsicum annuum HOM05D006343 ORTHO05D005694 5.8e-12 75.9 347 27.7
CAN.G650.32 Capsicum annuum HOM05D006343 ORTHO05D005694 9.9e-12 75.1 330 28.8
Cfa003895 Carpinus fangiana HOM05D006343 ORTHO05D005694 9.9e-12 75.1 320 29.7
Solyc02g070700.3 Solanum lycopersicum HOM05D006343 ORTHO05D005694 9.9e-12 75.1 318 31.4
CAN.G650.35 Capsicum annuum HOM05D006343 ORTHO05D005694 1.7e-11 74.3 250 31.2
Sopen02g019780 Solanum pennellii HOM05D006343 ORTHO05D005694 3.8e-11 73.2 319 30.4
SGA_v2.0_scaffold1G00635 Striga asiatica HOM05D006343 ORTHO05D005694 3.8e-11 73.2 344 29.1
Haze_15537 Corylus avellana HOM05D006343 ORTHO05D005694 1.1e-10 71.6 121 43.0
FAN10G3545 Fragaria x ananassa HOM05D006343 ORTHO05D005694 1.4e-10 71.2 360 28.3
unitig_22.g5289 Utricularia gibba HOM05D006343 ORTHO05D005694 1.4e-10 71.2 301 32.9
BcaB01g02239 Brassica carinata HOM05D012121 ORTHO05D005694 9.3e-10 68.6 263 30.4
CAN.G650.28 Capsicum annuum HOM05D006343 ORTHO05D005694 9.3e-10 68.6 249 29.7
DCAR_015699 Daucus carota HOM05D006343 ORTHO05D005694 4.6e-09 66.2 296 32.8
Thhalv10028840m.g Eutrema salsugineum HOM05D012121 ORTHO05D005694 4.6e-09 66.2 256 32.4
ECA233G1044 Erigeron canadensis HOM05D006343 ORTHO05D005694 6.0e-09 65.9 342 27.2
Cc02_g38320 Coffea canephora HOM05D006343 ORTHO05D005694 7.8e-09 65.5 321 27.1
Duzib133G0920 Durio zibethinus HOM05D006343 ORTHO05D005694 7.8e-09 65.5 321 32.4
Gohir.A11G090700 Gossypium hirsutum HOM05D006343 ORTHO05D005694 1.0e-08 65.1 78 55.1
THA.LOC104825850 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 1.3e-08 64.7 270 32.6
AL6G53170 Arabidopsis lyrata HOM05D012121 ORTHO05D005694 1.7e-08 64.3 251 29.5
CDE02G1832 Ceratophyllum demersum HOM05D006343 ORTHO05D005694 3.0e-08 63.5 304 26.0
Thecc.01G356100 Theobroma cacao HOM05D006343 ORTHO05D005694 3.0e-08 63.5 311 32.8
PGSC0003DMG400008290 Solanum tuberosum HOM05D006343 ORTHO05D005694 8.7e-08 62.0 172 30.8
Medtr8g028845 Medicago truncatula HOM05D006343 ORTHO05D005694 1.9e-07 60.8 268 28.7
Aqoxy7G00256 Aquilegia oxysepala HOM05D006343 ORTHO05D005694 2.5e-07 60.5 269 26.8
Migut.D00457 Erythranthe guttata HOM05D006343 ORTHO05D005694 2.5e-07 60.5 113 35.4
AT4G00310 Arabidopsis thaliana HOM05D012121 ORTHO05D005694 3.3e-07 60.1 252 29.8
PSO478G4526 Papaver somniferum HOM05D020029 ORTHO05D005694 3.3e-07 60.1 224 25.9
PSO782G1147 Papaver somniferum HOM05D020029 ORTHO05D005694 3.3e-07 60.1 107 34.6
ClCG06G003540 Citrullus lanatus HOM05D006343 ORTHO05D005694 4.3e-07 59.7 317 32.5
BcaC04g24184 Brassica carinata HOM05D012121 ORTHO05D005694 5.6e-07 59.3 351 25.6
BolC9t52962H Brassica oleracea HOM05D012121 ORTHO05D005694 5.6e-07 59.3 351 25.6
THA.LOC104801575 Tarenaya hassleriana HOM05D012121 ORTHO05D005694 7.3e-07 58.9 93 46.2
C09p00270 Brassica napus HOM05D012121 ORTHO05D005694 9.6e-07 58.5 353 25.8
TWI14G1134 Tripterygium wilfordii HOM05D006343 ORTHO05D005694 1.6e-06 57.8 257 27.6
BraA09t35701Z Brassica rapa HOM05D012121 ORTHO05D005694 2.1e-06 57.4 100 40.0
CARHR248400 Cardamine hirsuta HOM05D012121 ORTHO05D005694 2.1e-06 57.4 252 29.0
Sp6g00380 Schrenkiella parvula HOM05D012121 ORTHO05D005694 2.8e-06 57.0 351 26.5
Gohir.D08G153300 Gossypium hirsutum HOM05D006343 ORTHO05D005694 8.1e-06 55.5 311 29.3


User provided reference genes

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