Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 4374.7 2421 100.0
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2190.6 2514 57.4
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2142.5 2505 55.7
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2122.8 2529 55.3
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2113.2 2503 55.6
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2077.4 2511 55.3
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2073.5 2544 54.8
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2068.1 2502 55.2
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2036.5 2539 53.8
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2036.2 2508 54.3
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2021.5 2519 55.0
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2009.2 2495 54.4
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1997.2 2503 53.7
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1996.5 2506 53.7
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 1985.7 2498 54.0
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 1984.1 2501 53.1
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1981.8 2487 53.3
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1974.5 2503 53.4
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 1969.1 2510 53.3
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 1968.0 2498 53.8
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 1948.3 2554 52.8
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 1937.5 2508 53.5
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1931.4 2560 52.5
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 1924.8 2501 53.1
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1921.4 2561 52.2
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1917.9 2501 52.9
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 1917.1 2553 52.4
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1912.9 2474 53.3
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1912.1 2484 53.3
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 1911.3 2505 52.6
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1882.5 2510 52.9
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1874.0 2459 52.6
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1862.0 2489 52.2
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 1852.0 2496 50.6
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1851.6 2493 52.1
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 1843.6 2483 51.7
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1840.5 2546 49.5
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1809.3 2490 50.7
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 1798.1 2488 50.4
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1781.5 2512 51.0
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1770.0 2545 50.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 1760.0 2511 49.1
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1753.8 2513 50.5
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1737.2 2453 50.0
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1719.5 2184 54.3
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1715.7 2495 49.1
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1696.4 2491 48.7
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1684.5 2538 47.5
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1680.2 2488 48.3
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1671.8 2502 48.0
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1669.4 2488 48.7
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1668.7 2502 47.9
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1667.1 2499 49.2
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1663.7 2514 48.6
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1660.2 2503 47.8
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1659.4 2536 48.0
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1656.7 2470 49.4
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1639.0 2481 49.2
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1637.9 2304 51.5
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1634.8 2470 49.2
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1630.2 2478 47.7
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1623.2 2509 46.9
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1609.0 2495 47.2
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1603.6 2501 48.5
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1597.8 2491 47.3
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1597.0 2632 45.2
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1580.1 2021 53.1
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1576.6 2484 47.8
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1575.5 2482 46.7
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1573.9 2534 47.0
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1573.5 2573 44.5
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1573.1 2385 48.4
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1523.1 2538 44.4
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1513.8 2486 45.7
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1512.3 2487 46.8
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1478.4 2418 44.5
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1445.6 2494 45.9
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1442.2 2362 44.9
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1438.3 1869 52.8
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1398.3 2490 45.0
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1393.3 2504 44.6
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1335.1 2480 43.8
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1322.0 2482 43.0
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1317.0 2459 42.3
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1306.2 2599 40.1
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1247.6 2596 39.6
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1243.8 2524 39.3
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1212.2 2525 39.8
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1208.0 2518 41.1
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1198.3 2460 41.9
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1164.4 2478 41.0
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1145.6 2491 41.0
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1135.9 2601 40.1
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1131.7 2463 39.7
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1123.6 2461 40.2
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1112.8 2414 40.3
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1082.4 2422 39.9
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 1.0e-303 1048.1 2478 39.6
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.4e-292 1010.4 1282 49.9
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.2e-291 1008.1 1699 47.0
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 6.9e-284 982.2 2393 37.1
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 4.8e-277 959.5 1751 43.0
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 3.1e-276 956.8 2369 37.8
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 2.8e-261 907.1 977 56.2
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 4.7e-256 889.8 1028 57.1
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 2.3e-242 844.3 2502 37.5
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 9.8e-222 775.8 2728 34.8
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.7e-221 775.0 2397 36.0
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 1.9e-217 761.5 1031 56.5
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.9e-209 734.9 715 59.9
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 1.2e-203 715.7 2398 34.9
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 2.3e-202 711.4 2394 35.1
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 2.3e-202 711.4 2394 35.1
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.5e-201 708.8 2398 34.7
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 5.3e-199 700.3 2435 34.7
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.1e-191 674.5 947 53.3
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.9e-191 673.3 971 49.8
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.6e-166 591.7 2526 30.3
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.9e-165 588.2 1812 33.3
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 8.5e-165 586.6 1930 35.2
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 4.6e-163 580.9 567 59.8
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 4.1e-135 488.0 497 57.3
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 4.3e-124 451.4 446 56.3
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 5.6e-124 451.1 932 39.4
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 4.4e-121 441.4 778 40.7
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 5.2e-114 417.9 675 45.0
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.2e-105 390.2 1327 35.6
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 6.0e-102 377.9 1825 30.8
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.3e-96 360.1 1224 31.3
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 2.9e-88 332.4 2790 27.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.7e-72 280.0 296 55.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.8e-64 252.3 2690 28.8
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 5.1e-61 241.9 1020 33.5
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 6.3e-59 235.0 253 56.5
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 4.5e-57 228.8 253 55.7
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 1.3e-56 227.3 552 37.0
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.9e-55 223.4 980 28.9
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.1e-52 214.2 2808 26.9
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 6.1e-46 191.8 448 37.9
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 6.7e-45 188.3 224 54.5
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 3.3e-44 186.0 542 33.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 9.7e-44 184.5 2801 26.5
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 1.0e-40 174.5 299 41.5
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 4.4e-36 159.1 2404 24.9
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 4.5e-33 149.1 502 35.1
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 3.3e-28 132.9 178 45.5
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-26 127.9 332 36.4
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.1e-26 125.9 218 37.6
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 5.3e-26 125.6 326 34.7
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 4.7e-22 112.5 1099 24.6
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.5e-20 107.5 267 37.5
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 3.0e-13 83.2 78 61.5
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 1.5e-12 80.9 66 62.1
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.8e-11 76.6 63 61.9
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.8e-10 73.9 205 35.1
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.0e-08 68.2 140 37.1
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 5.0e-08 65.9 128 36.7
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 5.6e-07 62.4 116 40.5
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 1.6e-06 60.8 119 41.2
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 2.1e-06 60.5 157 33.1


User provided reference genes

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