Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.8e-169 598.2 324 100.0
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.8e-110 403.3 274 74.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 3.7e-108 395.6 265 70.6
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 4.1e-107 392.1 265 70.9
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 7.7e-106 387.9 301 67.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.0e-105 387.5 328 63.1
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.3e-105 387.1 338 59.8
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 2.9e-105 386.0 329 60.5
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 2.1e-103 379.8 329 60.8
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 4.7e-103 378.6 269 67.3
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.2e-102 375.2 321 59.2
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 3.4e-101 372.5 288 64.2
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.7e-100 370.2 272 64.3
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 2.2e-100 369.8 292 63.0
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 2.8e-100 369.4 304 60.9
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 2.4e-99 366.3 269 64.3
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 4.1e-99 365.5 269 63.9
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 4.1e-99 365.5 326 61.7
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 4.1e-99 365.5 276 62.3
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 4.1e-99 365.5 332 59.3
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 7.0e-99 364.8 321 57.6
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.0e-99 364.8 330 58.5
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 2.7e-98 362.8 276 62.0
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.5e-98 362.1 294 62.6
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 7.7e-98 361.3 268 64.2
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 1.7e-97 360.1 265 65.3
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.3e-97 359.8 264 66.7
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.3e-97 359.8 294 62.6
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 5.0e-97 358.6 327 61.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 5.0e-97 358.6 291 58.4
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 8.6e-97 357.8 288 62.8
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.1e-96 357.5 268 61.9
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.1e-96 357.5 272 62.1
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 1.5e-96 357.1 293 61.8
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.9e-96 356.7 289 61.6
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 7.2e-96 354.8 323 58.2
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 9.5e-96 354.4 265 64.2
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.2e-95 354.0 300 60.0
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.8e-95 352.8 324 58.3
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.8e-95 352.8 324 58.3
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.8e-95 352.8 281 60.9
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.8e-95 352.8 302 58.6
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 3.6e-95 352.4 324 57.1
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 6.1e-95 351.7 338 56.5
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 8.0e-95 351.3 265 62.6
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.0e-94 350.9 300 59.3
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.4e-94 350.5 268 64.6
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 4.0e-94 349.0 272 58.8
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 2.0e-93 346.7 289 56.4
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 4.4e-93 345.5 292 60.6
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 4.4e-93 345.5 272 61.0
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.7e-93 345.1 268 61.2
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.3e-92 344.0 269 62.5
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 4.9e-92 342.0 265 63.0
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 4.5e-90 335.5 294 57.1
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 5.9e-90 335.1 285 57.9
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 7.8e-90 334.7 277 57.8
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 7.8e-90 334.7 288 60.1
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 1.3e-89 334.0 293 59.0
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.3e-89 333.2 291 55.3
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.9e-89 332.8 302 56.3
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.1e-88 330.9 286 56.3
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.5e-88 329.7 339 54.9
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.3e-88 328.9 296 55.1
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 7.3e-88 328.2 285 57.5
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 3.6e-87 325.9 264 61.4
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.0e-86 324.3 300 57.7
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.3e-86 323.2 291 52.6
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.0e-85 320.1 291 53.6
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.0e-85 320.1 293 55.3
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 7.5e-85 318.2 291 52.9
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.4e-83 313.9 265 58.5
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.4e-83 313.9 265 58.5
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 7.0e-83 311.6 289 51.9
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 7.0e-83 311.6 270 56.7
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 9.2e-83 311.2 299 53.5
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.6e-82 310.5 269 57.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 2.0e-82 310.1 270 56.7
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.0e-82 310.1 290 51.4
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.6e-82 308.9 297 54.5
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.8e-82 308.1 272 55.5
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.0e-81 307.8 271 55.4
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 3.0e-81 306.2 302 53.6
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 3.9e-81 305.8 272 55.9
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.1e-80 304.3 270 55.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.6e-80 302.0 318 49.7
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.3e-80 301.6 326 49.1
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.2e-79 300.8 292 48.3
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.6e-79 300.4 282 53.5
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.1e-79 300.1 296 52.4
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 3.6e-79 299.3 293 52.2
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 8.0e-79 298.1 281 49.8
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 2.3e-78 296.6 295 52.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.3e-78 296.6 284 53.2
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 3.1e-78 296.2 290 50.7
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 4.0e-78 295.8 265 53.6
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 3.4e-77 292.7 286 53.1
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 5.8e-77 292.0 304 50.3
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 3.7e-76 289.3 304 51.6
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 4.9e-76 288.9 270 54.1
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.9e-76 288.9 299 50.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.4e-75 287.3 261 55.2
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 7.1e-75 285.0 291 48.1
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 3.5e-74 282.7 204 63.7
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 4.6e-74 282.3 296 49.7
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 6.0e-74 282.0 219 63.9
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.7e-73 280.4 273 53.5
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.3e-72 276.2 279 47.7
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 7.3e-72 275.0 297 45.5
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.1e-71 273.5 295 46.8
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-70 271.2 202 65.8
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.1e-70 271.2 202 65.8
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 6.8e-70 268.5 272 47.1
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 6.8e-70 268.5 297 44.1
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.2e-68 263.5 298 43.6
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 4.6e-66 255.8 294 44.6
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.0e-65 254.6 198 65.2
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.1e-65 252.3 256 50.0
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.5e-64 250.8 292 46.6
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 7.3e-64 248.4 295 45.1
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 5.2e-62 242.3 272 47.1
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 5.4e-59 232.3 289 43.6
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.2e-58 231.1 238 47.1
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.6e-58 229.2 291 43.0
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 2.3e-57 226.9 262 43.9
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.1e-57 225.7 280 43.9
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 2.6e-53 213.4 186 58.1
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 2.6e-53 213.4 262 42.4
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 7.1e-51 205.3 178 55.1
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 1.0e-49 201.4 174 56.9
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 8.7e-49 198.4 281 38.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 3.3e-48 196.4 270 40.4
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.3e-47 194.5 261 39.8
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.6e-45 186.8 259 42.1
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.6e-45 186.8 287 37.6
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.3e-44 184.5 260 39.2
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 2.7e-34 150.2 98 74.5
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.9e-27 127.5 207 35.3
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 4.1e-22 109.8 101 48.5
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 5.3e-22 109.4 123 42.3
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 9.4e-19 98.6 91 47.3
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.7e-18 97.1 204 29.4
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.2e-15 87.4 90 53.3
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.2e-15 87.4 90 53.3
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.2e-15 85.5 129 38.0
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.8e-14 84.3 294 27.2
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 4.5e-13 79.7 263 27.0
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 6.5e-12 75.9 72 50.0
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 9.4e-11 72.0 275 26.9


User provided reference genes

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