Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00848 Eucalyptus grandis HOM05D000896 ORTHO05D000594 7.3e-124 447.2 221 100.0
Eucgr.I00811 Eucalyptus grandis HOM05D000896 ORTHO05D000594 3.2e-103 378.6 261 76.2
Eucgr.I00818 Eucalyptus grandis HOM05D000896 ORTHO05D000594 4.5e-57 225.3 243 55.1
Eucgr.I00861 Eucalyptus grandis HOM05D000896 ORTHO05D000594 2.0e-44 183.3 193 55.4
Eucgr.I00855 Eucalyptus grandis HOM05D000896 ORTHO05D000594 1.6e-38 163.7 117 70.1
Eucgr.B00728 Eucalyptus grandis HOM05D000896 ORTHO05D000594 5.6e-31 138.7 141 51.1
Eucgr.B00726 Eucalyptus grandis HOM05D000896 ORTHO05D000594 1.4e-29 134.0 141 48.2
Eucgr.L00710 Eucalyptus grandis HOM05D000896 ORTHO05D000594 5.4e-18 95.5 100 52.0
Duzib251G0081 Durio zibethinus HOM05D000896 ORTHO05D000594 4.3e-15 85.9 178 31.5
Manes.09G155401 Manihot esculenta HOM05D000896 ORTHO05D000594 2.8e-14 83.2 185 36.8
Cfa004783 Carpinus fangiana HOM05D000896 ORTHO05D000594 8.1e-14 81.6 183 37.2
Cfa004785 Carpinus fangiana HOM05D000896 ORTHO05D000594 8.9e-13 78.2 160 38.1
Thecc.03G196900 Theobroma cacao HOM05D000896 ORTHO05D000594 1.2e-12 77.8 150 33.3
Manes.09G146800 Manihot esculenta HOM05D000896 ORTHO05D000594 2.6e-12 76.6 175 36.0
arahy.Tifrunner.gnm1.ann1.K5WR0Q Arachis hypogaea HOM05D011529 ORTHO05D000594 4.4e-12 75.9 144 35.4
Cfa004691 Carpinus fangiana HOM05D000896 ORTHO05D000594 4.4e-12 75.9 200 31.0
Sabra15G0011700 Salix brachista HOM05D000896 ORTHO05D000594 4.4e-12 75.9 171 33.9
Cfa004709 Carpinus fangiana HOM05D000896 ORTHO05D000594 7.6e-12 75.1 200 31.0
Cfa004784 Carpinus fangiana HOM05D000896 ORTHO05D000594 9.9e-12 74.7 140 38.6
Manes.15G190800 Manihot esculenta HOM05D000896 ORTHO05D000594 9.9e-12 74.7 162 32.1
Potri.015G014700 Populus trichocarpa HOM05D000896 ORTHO05D000594 1.3e-11 74.3 162 33.3
Gohir.D11G314050 Gossypium hirsutum HOM05D000896 ORTHO05D000594 3.8e-11 72.8 128 33.6
Potri.015G014200 Populus trichocarpa HOM05D000896 ORTHO05D000594 3.8e-11 72.8 163 32.5
arahy.Tifrunner.gnm1.ann1.TNG32Q Arachis hypogaea HOM05D011529 ORTHO05D000594 4.9e-11 72.4 144 34.7
FAN12G0984 Fragaria x ananassa HOM05D000896 ORTHO05D000594 4.9e-11 72.4 154 34.4
Gohir.A13G226166 Gossypium hirsutum HOM05D000896 ORTHO05D000594 4.9e-11 72.4 128 32.8
Thecc.03G197000 Theobroma cacao HOM05D000896 ORTHO05D000594 4.9e-11 72.4 150 33.3
Actinidia39404 Actinidia chinensis HOM05D000896 ORTHO05D000594 8.4e-11 71.6 144 31.2
Gohir.A02G048201 Gossypium hirsutum HOM05D000896 ORTHO05D000594 8.4e-11 71.6 175 30.3
DCAR_008698 Daucus carota HOM05D000896 ORTHO05D000594 1.1e-10 71.2 142 33.8
Phvul.010G000400 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 1.1e-10 71.2 146 30.8
Thecc.10G130700 Theobroma cacao HOM05D000896 ORTHO05D000594 1.1e-10 71.2 140 32.9
COL.COLO4_02946 Corchorus olitorius HOM05D000896 ORTHO05D000594 1.4e-10 70.9 144 35.4
Duzib251G0257 Durio zibethinus HOM05D000896 ORTHO05D000594 1.9e-10 70.5 158 31.0
Duzib251G0772 Durio zibethinus HOM05D000896 ORTHO05D000594 1.9e-10 70.5 157 31.2
DCAR_025815 Daucus carota HOM05D000896 ORTHO05D000594 3.2e-10 69.7 184 32.6
PGR004G0789 Punica granatum HOM05D000896 ORTHO05D000594 3.2e-10 69.7 133 35.3
Thecc.10G126800 Theobroma cacao HOM05D000896 ORTHO05D000594 3.2e-10 69.7 140 33.6
FAN07G2864 Fragaria x ananassa HOM05D000896 ORTHO05D000594 4.1e-10 69.3 195 28.7
arahy.Tifrunner.gnm1.ann1.4P3ANK Arachis hypogaea HOM05D011529 ORTHO05D000594 5.4e-10 68.9 144 32.6
Dinv21551 Davidia involucrata HOM05D000896 ORTHO05D000594 5.4e-10 68.9 144 31.9
Gohir.D13G231533 Gossypium hirsutum HOM05D000896 ORTHO05D000594 5.4e-10 68.9 192 30.2
Thecc.10G130500 Theobroma cacao HOM05D000896 ORTHO05D000594 5.4e-10 68.9 140 32.1
Ciclev10030095m.g Citrus clementina HOM05D000896 ORTHO05D000594 9.2e-10 68.2 168 31.5
Gohir.D13G055275 Gossypium hirsutum HOM05D000896 ORTHO05D000594 9.2e-10 68.2 139 32.4
Gohir.D13G231566 Gossypium hirsutum HOM05D000896 ORTHO05D000594 9.2e-10 68.2 192 29.7
QL03p039811 Quercus lobata HOM05D000896 ORTHO05D000594 9.2e-10 68.2 139 36.7
Ciclev10030266m.g Citrus clementina HOM05D000896 ORTHO05D000594 1.2e-09 67.8 168 31.0
FAN17G1144 Fragaria x ananassa HOM05D000896 ORTHO05D000594 1.2e-09 67.8 185 30.3
Gohir.A13G066051 Gossypium hirsutum HOM05D015798 ORTHO05D022811 1.2e-09 67.8 139 33.1
Gorai.013G016400 Gossypium raimondii HOM05D015798 ORTHO05D000594 1.2e-09 67.8 139 33.1
Manes.14G006500 Manihot esculenta HOM05D000896 ORTHO05D000594 1.6e-09 67.4 180 29.4
Thecc.10G126400 Theobroma cacao HOM05D000896 ORTHO05D000594 1.6e-09 67.4 140 33.6
Gohir.D02G050732 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.1e-09 67.0 155 32.3
Ciclev10029971m.g Citrus clementina HOM05D000896 ORTHO05D000594 2.7e-09 66.6 150 34.0
Gorai.013G062600 Gossypium raimondii HOM05D000896 ORTHO05D000594 2.7e-09 66.6 114 36.8
Dinv21550 Davidia involucrata HOM05D000896 ORTHO05D000594 3.5e-09 66.2 144 31.2
PGR119G0007 Punica granatum HOM05D000896 ORTHO05D000594 3.5e-09 66.2 133 32.3
Gohir.A01G161180 Gossypium hirsutum HOM05D000896 ORTHO05D000594 4.6e-09 65.9 175 29.7
Sc07g0008350 Simmondsia chinensis HOM05D000896 ORTHO05D000594 4.6e-09 65.9 132 37.9
Gorai.005G056000 Gossypium raimondii HOM05D000896 ORTHO05D000594 6.0e-09 65.5 177 29.9
RcHm_v2.0_Chr1g0380921 Rosa chinensis HOM05D000896 ORTHO05D000594 6.0e-09 65.5 204 28.9
QL03p040295 Quercus lobata HOM05D000896 ORTHO05D000594 7.8e-09 65.1 139 36.0
Atru.chr13.110 Acer truncatum HOM05D000896 ORTHO05D000594 1.0e-08 64.7 136 29.4
Gohir.D02G053350 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.0e-08 64.7 177 29.4
Prupe.6G353200 Prunus persica HOM05D000896 ORTHO05D000594 1.0e-08 64.7 178 28.7
TWI75G1398 Tripterygium wilfordii HOM05D000896 ORTHO05D000594 1.0e-08 64.7 203 29.1
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 1.3e-08 64.3 164 33.5
Gohir.A02G044702 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.3e-08 64.3 175 29.1
Gohir.A07G201750 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.3e-08 64.3 175 29.7
Nitab4.5_0001681g0040 Nicotiana tabacum HOM05D000896 ORTHO05D000594 1.3e-08 64.3 149 32.2
Cpa.g.sc13.154 Carica papaya HOM05D000896 ORTHO05D000594 2.3e-08 63.5 116 36.2
Gohir.D13G014966 Gossypium hirsutum HOM05D015798 ORTHO05D022811 2.3e-08 63.5 139 31.7
Prupe.2G278500 Prunus persica HOM05D000896 ORTHO05D000594 2.3e-08 63.5 166 28.3
TPR.G12242 Trifolium pratense HOM05D000896 ORTHO05D000594 3.0e-08 63.2 148 29.1
Actinidia23083 Actinidia chinensis HOM05D000896 ORTHO05D000594 3.9e-08 62.8 164 28.7
Ciclev10030359m.g Citrus clementina HOM05D000896 ORTHO05D000594 3.9e-08 62.8 183 29.5
FAN14G0662 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.9e-08 62.8 99 38.4
FAN14G1805 Fragaria x ananassa HOM05D000896 ORTHO05D000594 3.9e-08 62.8 99 38.4
Glyma.01G187100 Glycine max HOM05D000896 ORTHO05D000594 3.9e-08 62.8 171 26.9
Gohir.D02G050666 Gossypium hirsutum HOM05D000896 ORTHO05D000594 3.9e-08 62.8 180 28.9
Dinv08221 Davidia involucrata HOM05D000896 ORTHO05D000594 5.1e-08 62.4 115 34.8
FAN01G0184 Fragaria x ananassa HOM05D000896 ORTHO05D000594 6.6e-08 62.0 155 36.1
Gohir.A01G163850 Gossypium hirsutum HOM05D000896 ORTHO05D000594 6.6e-08 62.0 141 31.2
Cpa.g.sc3.72 Carica papaya HOM05D000896 ORTHO05D000594 8.6e-08 61.6 209 27.3
Cfa016248 Carpinus fangiana HOM05D000896 ORTHO05D000594 8.6e-08 61.6 141 30.5
QL03p040822 Quercus lobata HOM05D000896 ORTHO05D000594 8.6e-08 61.6 132 33.3
Dinv40965 Davidia involucrata HOM05D000896 ORTHO05D000594 1.1e-07 61.2 115 33.9
Duzib138G1815 Durio zibethinus HOM05D000896 ORTHO05D000594 1.1e-07 61.2 200 29.5
FAN06G0415 Fragaria x ananassa HOM05D000896 ORTHO05D000594 1.1e-07 61.2 155 35.5
FAN06G5054 Fragaria x ananassa HOM05D000896 ORTHO05D000594 1.1e-07 61.2 155 35.5
FAN22G1495 Fragaria x ananassa HOM05D000896 ORTHO05D000594 1.1e-07 61.2 126 31.7
Lj4g0007022 Lotus japonicus HOM05D000896 ORTHO05D000594 1.1e-07 61.2 156 29.5
SalBow1G3201 Salvia bowleyana HOM05D000896 ORTHO05D000594 1.1e-07 61.2 163 30.1
Cpa.g.sc4.67 Carica papaya HOM05D000896 ORTHO05D000594 1.5e-07 60.8 212 29.2
ClCG04G005240 Citrullus lanatus HOM05D040391 ORTHO05D034780 1.5e-07 60.8 185 28.6
FvH4_7g31340 Fragaria vesca HOM05D000896 ORTHO05D000594 1.5e-07 60.8 155 35.5
Gohir.D01G148400 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.5e-07 60.8 158 31.0
QL03p040404 Quercus lobata HOM05D000896 ORTHO05D000594 1.5e-07 60.8 132 33.3
Sed0016322 Sechium edule HOM05D000896 ORTHO05D000594 1.5e-07 60.8 173 30.1
Duzib177G0732 Durio zibethinus HOM05D000896 ORTHO05D000594 1.9e-07 60.5 100 37.0
Gohir.A12G043480 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.9e-07 60.5 226 26.5
Gohir.A12G043560 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.9e-07 60.5 226 26.5
Gohir.A12G043720 Gossypium hirsutum HOM05D000896 ORTHO05D000594 1.9e-07 60.5 226 26.5
Phvul.006G044100 Phaseolus vulgaris HOM05D000896 ORTHO05D000594 1.9e-07 60.5 143 27.3
Rhsim02G0212000 Rhododendron simsii HOM05D000896 ORTHO05D000594 1.9e-07 60.5 127 33.1
CANSAT80G0323 Cannabis sativa HOM05D000896 ORTHO05D000594 2.5e-07 60.1 93 38.7
CANSAT80G2420 Cannabis sativa HOM05D000896 ORTHO05D000594 2.5e-07 60.1 93 38.7
CANSAT80G2725 Cannabis sativa HOM05D000896 ORTHO05D000594 2.5e-07 60.1 93 38.7
ClCG04G005250 Citrullus lanatus HOM05D000896 ORTHO05D000594 2.5e-07 60.1 101 39.6
SGA_v2.0_scaffold56G20011 Striga asiatica HOM05D000896 ORTHO05D000594 2.5e-07 60.1 92 37.0
Actinidia23084 Actinidia chinensis HOM05D000896 ORTHO05D000594 3.3e-07 59.7 164 28.0
FAN10G0677 Fragaria x ananassa HOM05D016935 ORTHO05D000594 3.3e-07 59.7 120 36.7
Thecc.03G196400 Theobroma cacao HOM05D000896 ORTHO05D000594 3.3e-07 59.7 83 39.8
Atru.chr1.4152 Acer truncatum HOM05D000896 ORTHO05D000594 4.3e-07 59.3 154 26.0
Cpa.g.sc4.105 Carica papaya HOM05D000896 ORTHO05D000594 4.3e-07 59.3 212 27.8
FAN06G3056 Fragaria x ananassa HOM05D016935 ORTHO05D000594 4.3e-07 59.3 138 34.1
QL03p040416 Quercus lobata HOM05D000896 ORTHO05D000594 4.3e-07 59.3 158 31.0
TPR.G1144 Trifolium pratense HOM05D000896 ORTHO05D000594 4.3e-07 59.3 148 28.4
Haze_00194 Corylus avellana HOM05D000896 ORTHO05D000594 5.6e-07 58.9 104 36.5
FvH4_6g01440 Fragaria vesca HOM05D000896 ORTHO05D000594 5.6e-07 58.9 99 37.4
FAN01G0387 Fragaria x ananassa HOM05D016935 ORTHO05D000594 5.6e-07 58.9 136 33.8
MD07G1290000 Malus domestica HOM05D000896 ORTHO05D000594 7.3e-07 58.5 148 30.4
COL.COLO4_23622 Corchorus olitorius HOM05D000896 ORTHO05D000594 9.6e-07 58.2 193 26.9
Haze_00227 Corylus avellana HOM05D000896 ORTHO05D000594 9.6e-07 58.2 162 30.2
FAN03G1203 Fragaria x ananassa HOM05D016935 ORTHO05D000594 9.6e-07 58.2 151 33.8
Hma1.2p1_0128F.1_g059930 Hydrangea macrophylla HOM05D000896 ORTHO05D000594 9.6e-07 58.2 100 39.0
MD01G1220100 Malus domestica HOM05D000896 ORTHO05D000594 9.6e-07 58.2 189 28.6
Nitab4.5_0000264g0110 Nicotiana tabacum HOM05D000896 ORTHO05D000594 9.6e-07 58.2 174 28.7
QL02p098711 Quercus lobata HOM05D000896 ORTHO05D000594 9.6e-07 58.2 153 32.7
Rhsim07G0194100 Rhododendron simsii HOM05D030800 ORTHO05D030536 9.6e-07 58.2 185 29.2
MELO3C005256.2 Cucumis melo HOM05D000896 ORTHO05D000594 1.2e-06 57.8 149 30.9
Duzib177G1220 Durio zibethinus HOM05D000896 ORTHO05D000594 1.2e-06 57.8 119 37.8
ECA234G4629 Erigeron canadensis HOM05D000896 ORTHO05D000594 1.2e-06 57.8 153 30.1
FAN10G2619 Fragaria x ananassa HOM05D016935 ORTHO05D000594 1.2e-06 57.8 136 33.8
Nitab4.5_0008682g0010 Nicotiana tabacum HOM05D000896 ORTHO05D000594 1.2e-06 57.8 146 34.2
CANSAT80G0091 Cannabis sativa HOM05D000896 ORTHO05D000594 1.6e-06 57.4 93 37.6
COL.COLO4_20383 Corchorus olitorius HOM05D000896 ORTHO05D000594 1.6e-06 57.4 193 26.9
Rhsim07G0194000 Rhododendron simsii HOM05D030800 ORTHO05D030536 1.6e-06 57.4 184 29.9
Gohir.D07G208050 Gossypium hirsutum HOM05D000896 ORTHO05D000594 2.1e-06 57.0 128 31.2
Gorai.008G045700 Gossypium raimondii HOM05D000896 ORTHO05D000594 2.1e-06 57.0 196 27.6
PGSC0003DMG400034363 Solanum tuberosum HOM05D000896 ORTHO05D000594 2.1e-06 57.0 106 36.8
Rhsim02G0212100 Rhododendron simsii HOM05D000896 ORTHO05D000594 2.8e-06 56.6 138 27.5
Glyma.01G187000 Glycine max HOM05D000896 ORTHO05D000594 3.6e-06 56.2 101 31.7
PGSC0003DMG400014860 Solanum tuberosum HOM05D000896 ORTHO05D000594 3.6e-06 56.2 91 39.6
Migut.L00847 Erythranthe guttata HOM05D000896 ORTHO05D000594 4.7e-06 55.8 98 35.7
FvH4_7g31730 Fragaria vesca HOM05D016935 ORTHO05D000594 4.7e-06 55.8 206 28.2
SalBow1G6889 Salvia bowleyana HOM05D000896 ORTHO05D000594 4.7e-06 55.8 182 25.8
TWI34G0441 Tripterygium wilfordii HOM05D000896 ORTHO05D000594 4.7e-06 55.8 145 29.7
Migut.M01845 Erythranthe guttata HOM05D000896 ORTHO05D000594 6.2e-06 55.5 98 35.7
QL10p040408 Quercus lobata HOM05D020057 ORTHO05D000594 6.2e-06 55.5 137 32.1
Gohir.D12G042950 Gossypium hirsutum HOM05D000896 ORTHO05D000594 8.1e-06 55.1 166 30.1
Psat5g258240 Pisum sativum HOM05D000896 ORTHO05D000594 8.1e-06 55.1 143 30.1
Rhsim02G0210600 Rhododendron simsii HOM05D000896 ORTHO05D000594 8.1e-06 55.1 192 27.6


User provided reference genes

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