Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 4.8e-185 651.0 319 100.0
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.0e-130 469.5 355 68.5
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 6.9e-91 338.2 330 57.0
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 8.5e-81 304.7 357 45.1
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 2.1e-79 300.1 356 44.9
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 6.1e-79 298.5 357 46.5
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 7.9e-79 298.1 356 44.7
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 5.1e-78 295.4 354 45.5
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 8.8e-78 294.7 357 46.5
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 4.3e-77 292.4 354 43.8
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 4.3e-77 292.4 356 43.5
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 5.7e-77 292.0 354 43.5
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 7.4e-77 291.6 350 42.6
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 9.7e-77 291.2 356 44.7
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-76 290.4 356 43.3
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.7e-76 289.3 356 43.0
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 3.7e-76 289.3 355 43.1
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 6.3e-76 288.5 359 45.1
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 8.2e-76 288.1 353 45.6
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.4e-75 286.6 357 43.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 4.1e-75 285.8 359 44.6
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 9.1e-75 284.6 353 43.6
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 1.5e-74 283.9 355 41.1
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.0e-74 283.5 358 44.1
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.4e-74 282.7 356 42.4
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 3.4e-74 282.7 353 42.8
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 1.3e-73 280.8 351 44.7
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 2.2e-73 280.0 355 43.9
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 2.9e-73 279.6 356 42.1
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 5.0e-73 278.9 353 41.4
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 6.5e-73 278.5 352 42.3
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 6.5e-73 278.5 351 41.3
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 8.5e-73 278.1 353 42.2
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 1.9e-72 276.9 349 44.1
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.5e-72 276.6 355 41.4
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 2.5e-72 276.6 352 41.8
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 3.2e-72 276.2 356 41.9
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 4.2e-72 275.8 351 41.0
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 5.5e-72 275.4 355 43.4
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 5.5e-72 275.4 355 41.4
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.5e-72 275.4 354 41.2
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-71 274.2 353 41.1
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.1e-71 273.5 355 41.1
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 2.1e-71 273.5 351 40.7
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.7e-71 273.1 358 41.9
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 3.6e-71 272.7 351 41.3
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 4.7e-71 272.3 353 40.5
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 7.9e-71 271.6 355 41.1
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.0e-70 271.2 352 43.2
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.8e-70 270.4 352 43.5
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 2.3e-70 270.0 352 40.9
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 6.7e-70 268.5 352 42.0
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.1e-69 267.7 354 42.7
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 1.1e-69 267.7 355 41.7
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 1.5e-69 267.3 351 42.2
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-69 267.3 355 42.0
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.6e-69 266.5 355 41.7
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 5.7e-69 265.4 349 41.5
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 5.7e-69 265.4 349 40.7
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.2e-68 263.5 359 42.9
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 2.2e-68 263.5 354 40.4
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 2.8e-68 263.1 351 40.5
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 6.3e-68 261.9 356 43.0
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.1e-67 261.2 359 42.3
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 1.4e-67 260.8 337 43.0
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 2.4e-67 260.0 351 39.9
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 2.4e-67 260.0 351 41.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 4.1e-67 259.2 350 40.3
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 5.3e-67 258.8 354 40.4
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 7.0e-67 258.5 356 40.2
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 1.2e-66 257.7 361 41.6
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 3.5e-66 256.1 356 39.0
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 3.5e-66 256.1 357 39.5
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 4.5e-66 255.8 358 40.5
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 7.7e-66 255.0 362 39.5
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.3e-65 254.2 362 41.7
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 2.9e-65 253.1 355 38.9
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 2.9e-65 253.1 355 38.9
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 3.8e-65 252.7 355 40.8
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 8.5e-65 251.5 355 40.0
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 1.9e-64 250.4 355 38.6
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 3.2e-64 249.6 355 38.9
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 3.2e-64 249.6 347 39.8
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 3.2e-64 249.6 356 39.0
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.2e-63 247.7 344 39.5
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.7e-63 246.5 344 39.0
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 4.7e-63 245.7 345 40.9
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.0e-62 244.6 354 41.8
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.4e-62 244.2 353 38.5
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 4.0e-62 242.7 352 38.1
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.8e-62 241.5 355 37.7
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 2.6e-61 240.0 403 35.2
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.7e-60 237.3 341 40.8
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 3.7e-60 236.1 355 37.7
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.4e-59 234.2 360 37.5
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 9.1e-59 231.5 355 37.2
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 2.0e-58 230.3 356 38.5
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.5e-58 229.2 355 36.9
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.3e-57 227.6 338 37.6
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.7e-57 227.3 356 37.9
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 3.8e-57 226.1 342 37.7
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 8.5e-57 224.9 353 37.1
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 1.5e-56 224.2 349 37.2
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.5e-56 223.4 335 37.0
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 7.2e-56 221.9 358 35.8
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 2.1e-55 220.3 327 37.9
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 8.0e-55 218.4 355 35.5
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-53 214.5 355 36.6
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-53 214.5 354 37.3
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 2.0e-53 213.8 283 40.6
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.6e-53 213.4 287 40.4
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 4.4e-53 212.6 394 34.8
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 4.4e-53 212.6 288 41.0
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 5.7e-53 212.2 342 35.4
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 9.8e-53 211.5 349 36.7
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 1.4e-51 207.6 337 37.1
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.4e-51 206.8 329 39.2
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 9.4e-48 194.9 351 35.0
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 2.6e-45 186.8 314 36.3
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.4e-45 186.4 264 39.4
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 5.4e-43 179.1 331 36.0
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 5.4e-43 179.1 347 33.4
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.7e-41 174.1 333 32.7
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 3.8e-41 172.9 247 39.7
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 2.2e-36 157.1 151 54.3
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 8.3e-36 155.2 260 36.2
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 8.3e-36 155.2 346 32.1
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 8.3e-36 155.2 403 28.0
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.4e-35 154.5 329 30.1
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 4.1e-35 152.9 396 29.3
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 4.1e-35 152.9 157 49.0
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 2.3e-33 147.1 232 40.1
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 8.6e-33 145.2 358 29.1
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.8e-31 140.2 374 27.0
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 4.7e-31 139.4 151 49.0
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 1.8e-30 137.5 272 30.9
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 1.8e-30 137.5 387 26.6
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 7.5e-29 132.1 290 32.4
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 9.8e-29 131.7 267 34.5
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 1.7e-28 131.0 402 26.6
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 6.4e-28 129.0 152 46.7
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 4.3e-24 116.3 247 32.8
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.8e-22 110.9 342 28.1
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 8.9e-22 108.6 182 31.3
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 9.8e-21 105.1 331 26.6
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.9e-20 103.6 107 43.0
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 4.1e-19 99.8 75 57.3
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.3e-17 94.7 96 41.7
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 2.3e-17 94.0 222 31.5
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 3.0e-17 93.6 174 32.8
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 2.1e-15 87.4 90 45.6
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.6e-15 86.7 97 45.4
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 4.0e-14 83.2 144 38.2
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 9.9e-13 78.6 59 52.5
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 1.9e-11 74.3 114 37.7
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 1.9e-11 74.3 72 44.4
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.7e-09 67.8 63 46.0
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 6.6e-09 65.9 63 47.6
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 2.5e-08 63.9 138 31.9
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.8e-07 60.5 61 44.3


User provided reference genes

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