Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.6e-183 645.2 315 100.0
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.2e-123 444.9 383 62.9
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 3.4e-90 335.9 330 57.0
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 2.4e-75 286.6 378 43.1
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 2.0e-74 283.5 366 42.9
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 2.0e-74 283.5 380 42.6
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 3.4e-74 282.7 375 43.5
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 7.6e-74 281.6 376 42.8
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 7.6e-74 281.6 377 43.0
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 7.6e-74 281.6 380 43.2
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 7.6e-74 281.6 375 42.7
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 2.2e-73 280.0 377 43.5
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 2.2e-73 280.0 375 41.1
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 7.1e-72 275.0 370 43.2
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 7.1e-72 275.0 380 43.2
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.1e-71 273.5 379 41.2
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 6.0e-71 271.9 375 41.9
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 6.0e-71 271.9 375 43.2
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 3.0e-70 269.6 374 42.8
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.9e-70 269.2 375 42.9
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.9e-70 269.2 375 42.9
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 5.1e-70 268.9 375 41.6
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 5.1e-70 268.9 373 40.8
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 6.6e-70 268.5 375 42.9
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.9e-69 266.9 373 42.9
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.9e-69 266.9 374 41.7
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 2.5e-69 266.5 378 42.1
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 7.3e-69 265.0 375 42.7
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.3e-68 264.2 375 41.3
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 1.6e-68 263.8 378 41.0
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 2.1e-68 263.5 380 41.6
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 2.1e-68 263.5 371 41.0
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 2.1e-68 263.5 348 45.1
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 2.8e-68 263.1 378 41.0
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 2.8e-68 263.1 376 39.4
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 3.6e-68 262.7 377 41.4
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 6.2e-68 261.9 373 41.0
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 6.2e-68 261.9 370 41.9
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.1e-68 261.5 377 41.4
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 8.1e-68 261.5 374 41.2
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.4e-67 260.0 377 40.6
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 2.4e-67 260.0 374 40.9
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 2.4e-67 260.0 377 40.3
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.1e-67 259.6 375 40.8
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 5.3e-67 258.8 367 41.7
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 6.9e-67 258.5 377 41.1
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 6.9e-67 258.5 371 41.2
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 9.0e-67 258.1 385 41.0
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.2e-66 257.7 336 43.8
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 1.5e-66 257.3 380 39.2
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 2.0e-66 256.9 373 39.9
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.0e-66 256.9 375 41.3
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 2.6e-66 256.5 385 41.0
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 5.8e-66 255.4 377 38.7
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 5.8e-66 255.4 370 40.3
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 7.6e-66 255.0 378 38.9
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.3e-65 254.2 375 40.8
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 2.2e-65 253.4 380 40.8
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 4.2e-64 249.2 387 38.8
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 4.2e-64 249.2 387 38.8
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 5.4e-64 248.8 379 38.5
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 2.7e-63 246.5 372 41.1
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.7e-63 246.5 376 40.4
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 3.5e-63 246.1 379 38.3
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 6.0e-63 245.4 374 38.0
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 6.0e-63 245.4 382 36.9
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 6.0e-63 245.4 379 38.3
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.0e-62 244.6 376 40.7
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 2.3e-62 243.4 382 37.4
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 5.1e-62 242.3 384 37.8
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 1.5e-61 240.7 371 39.1
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.5e-61 240.7 378 38.9
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 1.9e-61 240.4 383 37.1
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 4.3e-61 239.2 383 38.4
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 7.4e-61 238.4 374 39.8
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 7.4e-61 238.4 377 38.2
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 9.6e-61 238.0 379 39.6
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 1.6e-60 237.3 381 36.5
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.6e-60 237.3 379 38.0
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.8e-60 235.7 357 37.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 6.2e-60 235.3 385 36.6
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 6.2e-60 235.3 377 37.1
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 8.1e-60 235.0 368 37.5
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 1.4e-59 234.2 376 37.8
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 2.4e-59 233.4 382 35.3
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 4.0e-59 232.6 384 36.5
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.2e-58 231.1 385 36.9
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.0e-58 230.3 363 37.5
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 3.4e-58 229.6 361 40.2
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.3e-57 227.6 365 36.2
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.3e-57 227.6 372 35.5
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 2.2e-57 226.9 381 34.4
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.8e-57 226.1 383 36.8
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 8.4e-57 224.9 373 36.7
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 4.2e-56 222.6 365 36.2
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 5.5e-56 222.2 373 35.4
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 1.0e-54 218.0 370 35.7
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 1.3e-54 217.6 368 37.2
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 1.3e-54 217.6 380 35.3
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 5.1e-54 215.7 377 34.0
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 6.7e-54 215.3 382 35.6
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 1.1e-53 214.5 372 34.9
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 1.5e-53 214.2 432 32.4
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 5.6e-53 212.2 369 34.4
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 5.6e-53 212.2 371 35.0
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 1.3e-52 211.1 368 35.1
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 9.0e-51 204.9 366 36.1
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.5e-50 204.1 329 39.2
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 6.5e-49 198.7 318 38.4
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 6.5e-49 198.7 370 35.1
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 8.4e-49 198.4 425 32.0
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 3.2e-48 196.4 359 36.2
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 3.2e-48 196.4 371 35.3
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-47 194.5 309 38.5
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 2.7e-47 193.4 337 36.5
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 5.1e-46 189.1 319 36.7
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.9e-45 187.2 362 35.6
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 4.3e-45 186.0 289 38.8
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 5.7e-45 185.7 360 35.3
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.6e-44 184.1 284 39.1
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.4e-43 181.0 381 30.4
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.8e-43 180.6 289 39.1
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.3e-37 159.8 192 45.8
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 4.3e-37 159.5 317 32.5
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.3e-37 159.5 417 28.8
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 2.2e-36 157.1 182 47.8
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 6.3e-36 155.6 284 33.1
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 2.6e-34 150.2 264 33.3
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 2.6e-34 150.2 370 29.7
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 9.4e-32 141.7 225 37.8
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 2.1e-31 140.6 131 53.4
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.4e-30 137.9 316 30.1
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 2.3e-30 137.1 363 29.8
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 1.5e-29 134.4 184 43.5
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 2.8e-28 130.2 405 25.7
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 1.8e-27 127.5 176 41.5
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 5.3e-27 125.9 256 36.3
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 9.1e-27 125.2 420 26.0
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.0e-26 124.0 373 26.8
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.7e-25 120.9 171 43.3
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 2.5e-24 117.1 110 47.3
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 3.6e-23 113.2 296 29.7
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 5.2e-22 109.4 118 45.8
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 2.6e-21 107.1 319 27.3
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 1.8e-19 100.9 130 43.8
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 2.4e-19 100.5 122 44.3
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 4.1e-19 99.8 304 28.6
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 7.7e-18 95.5 251 32.3
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 3.8e-17 93.2 381 24.4
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 6.5e-17 92.4 105 41.0
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 2.1e-15 87.4 80 48.8
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-15 87.4 140 35.7
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 4.7e-15 86.3 93 49.5
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 1.4e-14 84.7 84 48.8
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.8e-14 82.0 65 56.9
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 9.7e-13 78.6 98 40.8
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 1.3e-12 78.2 117 40.2
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 3.7e-12 76.6 72 54.2
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 3.7e-12 76.6 241 27.4
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 2.4e-11 73.9 106 36.8
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 9.1e-11 72.0 157 32.5
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 2.0e-10 70.9 115 38.3


User provided reference genes

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