Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 2.6e-110 402.1 209 100.0
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.9e-36 156.8 226 50.0
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.3e-34 150.6 221 48.4
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.3e-34 149.8 220 48.6
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 3.9e-34 149.1 225 48.9
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.5e-33 147.1 230 47.0
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.5e-33 147.1 209 50.7
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.3e-33 146.0 224 48.7
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.6e-33 145.2 221 49.3
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 9.6e-33 144.4 222 47.7
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.3e-32 144.1 221 49.3
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 1.3e-32 144.1 210 48.1
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.6e-32 142.5 221 48.4
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 4.8e-32 142.1 224 45.1
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.1e-31 141.0 221 48.9
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 6.9e-31 138.3 225 45.8
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 1.5e-30 137.1 221 47.5
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.5e-30 137.1 210 46.7
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.5e-30 137.1 222 43.2
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.5e-30 137.1 218 47.2
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 3.4e-30 136.0 210 46.7
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 4.5e-30 135.6 224 43.8
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 7.6e-30 134.8 220 44.1
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.3e-29 134.0 228 45.2
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.7e-29 133.7 224 43.3
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 6.4e-29 131.7 224 42.4
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 1.4e-28 130.6 230 42.6
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.9e-28 130.2 209 42.6
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.9e-28 130.2 209 42.6
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.2e-28 129.4 223 43.5
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.2e-28 129.0 226 42.9
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 9.3e-28 127.9 221 44.8
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 2.7e-27 126.3 224 43.3
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.7e-27 126.3 217 43.3
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 3.5e-27 125.9 230 40.9
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 3.5e-27 125.9 226 43.4
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 3.5e-27 125.9 222 41.0
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 4.6e-27 125.6 220 41.8
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 7.9e-27 124.8 220 43.6
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.3e-26 124.0 217 42.9
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-26 124.0 226 42.9
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 1.8e-26 123.6 215 42.8
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 2.3e-26 123.2 215 42.3
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 2.3e-26 123.2 216 43.1
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 3.0e-26 122.9 222 42.8
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 3.0e-26 122.9 211 44.5
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.1e-25 120.9 242 43.4
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 1.5e-25 120.6 239 42.3
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.9e-25 120.2 227 41.4
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.3e-25 119.0 209 43.5
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.6e-25 118.6 209 40.7
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 5.6e-25 118.6 209 41.1
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.3e-24 117.5 211 42.7
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.6e-24 117.1 210 42.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 3.7e-24 115.9 224 38.8
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.7e-24 115.9 212 42.9
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 6.2e-24 115.2 233 39.9
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.1e-23 114.4 209 41.6
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.8e-23 113.6 209 39.7
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.8e-23 113.6 227 38.3
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 2.4e-23 113.2 231 40.7
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.3e-23 112.1 208 41.3
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 5.3e-23 112.1 227 37.4
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 9.0e-23 111.3 211 43.1
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.0e-22 110.2 207 41.1
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.0e-22 110.2 237 40.9
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.6e-22 109.8 221 38.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 7.6e-22 108.2 213 40.8
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.0e-21 107.8 226 40.3
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.3e-21 107.5 213 39.4
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-21 107.5 206 40.3
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 1.7e-21 107.1 214 43.5
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 2.9e-21 106.3 217 38.7
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 2.9e-21 106.3 215 40.0
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 3.8e-21 105.9 214 38.3
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 3.8e-21 105.9 216 42.1
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 8.4e-21 104.8 205 38.0
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 8.4e-21 104.8 220 39.1
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-20 104.0 208 40.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.4e-20 104.0 218 39.4
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-20 103.6 209 41.6
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-20 103.6 209 41.6
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 1.9e-20 103.6 213 40.4
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.9e-20 103.6 206 38.8
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 2.5e-20 103.2 209 37.8
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 3.2e-20 102.8 211 39.8
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 5.5e-20 102.1 208 39.9
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 7.1e-20 101.7 216 38.9
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 9.3e-20 101.3 160 45.6
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.6e-19 100.5 221 37.6
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.1e-19 100.1 144 47.9
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.5e-19 99.4 211 38.9
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.5e-19 99.4 206 37.4
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 7.9e-19 98.2 222 37.8
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 7.9e-19 98.2 158 45.6
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 1.3e-18 97.4 158 44.3
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.3e-18 97.4 139 50.4
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 1.3e-18 97.4 210 38.1
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 3.0e-18 96.3 141 46.8
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.0e-18 96.3 232 36.6
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 3.9e-18 95.9 199 39.7
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 5.1e-18 95.5 226 36.3
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 6.7e-18 95.1 226 36.3
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.7e-18 95.1 128 46.9
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.5e-17 94.0 222 36.9
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 1.9e-17 93.6 137 45.3
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.3e-17 92.8 210 35.7
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 3.3e-17 92.8 171 43.9
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 5.7e-17 92.0 119 47.1
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 5.7e-17 92.0 119 47.1
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 7.4e-17 91.7 119 47.1
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 7.4e-17 91.7 119 47.1
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 7.4e-17 91.7 119 47.1
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 9.6e-17 91.3 154 43.5
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 9.6e-17 91.3 222 36.5
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-16 90.9 119 46.2
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 1.3e-16 90.9 119 46.2
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.6e-16 90.5 119 47.1
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.1e-16 90.1 212 36.3
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 3.7e-16 89.4 196 40.3
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 3.7e-16 89.4 119 46.2
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 8.2e-16 88.2 154 40.9
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 8.2e-16 88.2 200 38.5
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 8.2e-16 88.2 210 36.2
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.1e-15 87.8 236 35.2
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.4e-15 86.7 146 43.2
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.1e-15 86.3 141 45.4
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 3.1e-15 86.3 136 41.9
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 5.3e-15 85.5 221 35.7
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 5.3e-15 85.5 146 42.5
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 5.3e-15 85.5 154 41.6
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 6.9e-15 85.1 119 43.7
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 6.9e-15 85.1 119 43.7
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 9.0e-15 84.7 136 40.4
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 9.0e-15 84.7 136 40.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.5e-14 84.0 154 40.9
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.5e-14 84.0 154 40.9
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.0e-14 83.6 209 38.3
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.5e-14 82.4 156 37.2
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 5.8e-14 82.0 220 34.5
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 5.8e-14 82.0 136 39.7
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 5.8e-14 82.0 170 38.8
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.6e-14 81.6 210 35.2
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.7e-13 80.5 129 44.2
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 5.0e-13 79.0 126 43.7
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.1e-12 77.8 143 40.6
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 1.4e-12 77.4 197 33.0
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 1.9e-12 77.0 137 39.4
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.9e-12 77.0 60 66.7
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 2.5e-12 76.6 240 32.5
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.2e-12 75.9 210 32.9
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 4.2e-12 75.9 210 33.3
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 4.2e-12 75.9 125 40.8
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 9.3e-12 74.7 205 34.1
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.2e-11 74.3 145 37.2
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 5.1e-10 68.9 232 30.6
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 6.7e-10 68.6 206 35.4
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.5e-09 67.4 148 37.8
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 7.4e-09 65.1 48 68.8
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 9.7e-09 64.7 46 67.4
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.2e-08 63.5 119 35.3
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 3.7e-08 62.8 246 28.9
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 3.7e-08 62.8 115 39.1
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 4.8e-08 62.4 123 34.1
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.8e-08 62.4 44 70.5
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 6.3e-08 62.0 51 62.7
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 1.4e-07 60.8 44 68.2
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.2e-06 57.8 155 34.2
BcaC04g19976 Brassica carinata HOM05D010683 ORTHO05D008293 2.6e-06 56.6 211 28.9
C09p49230 Brassica napus HOM05D010683 ORTHO05D008293 2.6e-06 56.6 211 28.9
BolC9t57773H Brassica oleracea HOM05D010683 ORTHO05D008293 2.6e-06 56.6 211 28.9
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 4.5e-06 55.8 191 31.4
Dinv38761 Davidia involucrata HOM05D001536 ORTHO05D001442 4.5e-06 55.8 73 43.8
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 4.5e-06 55.8 38 73.7
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 7.7e-06 55.1 50 56.0
Aqoxy3G03549 Aquilegia oxysepala HOM05D001536 ORTHO05D001442 1.0e-05 54.7 68 47.1
TWI31G0752 Tripterygium wilfordii HOM05D001536 ORTHO05D001442 1.0e-05 54.7 74 43.2


User provided reference genes

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