Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.2e-88 330.5 273 100.0
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 3.7e-53 212.6 258 79.8
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 4.9e-53 212.2 257 80.2
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 8.3e-53 211.5 260 78.8
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 8.3e-53 211.5 253 82.6
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.4e-52 210.7 256 80.5
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.9e-52 210.3 245 81.6
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.9e-52 210.3 256 71.5
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.9e-52 210.3 256 80.9
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.9e-52 210.3 256 80.5
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.2e-52 209.5 242 83.1
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 4.1e-52 209.1 256 80.9
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 5.4e-52 208.8 252 80.6
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.4e-52 208.8 252 80.6
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 5.4e-52 208.8 264 78.4
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.2e-51 207.6 260 80.4
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.6e-51 207.2 252 79.8
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.6e-51 207.2 257 78.2
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.1e-51 206.8 256 80.1
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.1e-51 206.8 256 80.1
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.7e-51 206.5 256 79.7
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 2.7e-51 206.5 257 80.5
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 2.7e-51 206.5 259 77.6
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.6e-51 205.7 257 79.0
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 7.8e-51 204.9 256 79.3
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.3e-50 204.1 259 78.4
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.3e-50 204.1 255 80.0
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.3e-50 204.1 255 80.4
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 1.7e-50 203.8 257 77.8
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 2.3e-50 203.4 257 78.2
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 3.0e-50 203.0 257 79.0
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 3.9e-50 202.6 255 79.2
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.9e-50 202.6 258 78.7
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.1e-50 202.2 255 79.2
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 5.1e-50 202.2 247 81.8
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.1e-50 202.2 257 79.0
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 8.6e-50 201.4 257 77.8
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 8.6e-50 201.4 257 77.8
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 8.6e-50 201.4 252 79.8
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 8.6e-50 201.4 252 79.8
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.1e-49 201.1 257 79.8
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.5e-49 200.7 250 79.2
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.5e-49 199.9 261 78.2
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 2.5e-49 199.9 241 82.6
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 3.3e-49 199.5 253 75.9
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 3.3e-49 199.5 252 79.0
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 3.3e-49 199.5 252 79.0
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 4.3e-49 199.1 257 78.2
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.3e-49 199.1 242 81.4
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 4.3e-49 199.1 242 81.8
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 5.6e-49 198.7 258 77.9
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.3e-49 198.4 239 82.0
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 9.6e-49 198.0 257 78.6
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 9.6e-49 198.0 257 77.8
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.2e-48 197.6 245 80.0
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.2e-48 197.6 257 77.4
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.2e-48 197.6 257 77.8
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.6e-48 197.2 255 78.0
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.6e-48 197.2 252 78.6
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.1e-48 196.8 239 81.6
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.8e-48 196.4 258 77.5
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 2.8e-48 196.4 258 78.7
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 6.2e-48 195.3 252 77.8
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 6.2e-48 195.3 251 78.1
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 8.1e-48 194.9 257 78.2
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.4e-47 194.1 253 78.7
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.4e-47 193.4 258 77.1
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.4e-47 193.4 259 76.8
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 2.4e-47 193.4 242 79.3
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 3.1e-47 193.0 242 79.3
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 3.1e-47 193.0 263 76.4
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 5.2e-47 192.2 257 77.4
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 5.2e-47 192.2 258 76.0
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 5.2e-47 192.2 256 79.3
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 6.8e-47 191.8 252 75.8
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 6.8e-47 191.8 260 79.2
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 6.8e-47 191.8 253 72.3
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 8.9e-47 191.4 267 75.3
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 1.2e-46 191.0 257 77.4
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.6e-46 189.9 257 75.1
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 2.6e-46 189.9 267 75.3
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 2.6e-46 189.9 257 77.8
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 2.6e-46 189.9 257 77.8
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 2.6e-46 189.9 257 77.8
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 2.6e-46 189.9 257 77.8
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.6e-46 189.9 258 77.1
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.6e-46 189.9 258 77.1
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 2.6e-46 189.9 241 79.7
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 3.4e-46 189.5 240 80.4
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 4.4e-46 189.1 257 77.4
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 5.8e-46 188.7 258 74.4
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 7.6e-46 188.3 261 74.7
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 9.9e-46 188.0 250 78.0
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 9.9e-46 188.0 234 81.2
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.7e-45 187.2 258 76.4
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 2.2e-45 186.8 253 74.3
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 2.2e-45 186.8 253 74.3
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 2.2e-45 186.8 242 76.9
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 2.9e-45 186.4 259 76.8
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 2.9e-45 186.4 262 76.3
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 4.9e-45 185.7 252 75.8
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.4e-45 185.3 258 75.2
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.1e-44 184.5 251 77.3
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.4e-44 184.1 257 74.7
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.9e-44 183.7 240 80.0
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 2.4e-44 183.3 242 73.1
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 3.2e-44 183.0 258 76.0
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 5.4e-44 182.2 259 76.1
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 5.4e-44 182.2 259 76.1
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 7.1e-44 181.8 259 76.1
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 9.3e-44 181.4 257 74.7
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 1.6e-43 180.6 240 80.4
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 4.6e-43 179.1 241 75.9
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 6.0e-43 178.7 258 75.2
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 6.0e-43 178.7 258 75.2
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 7.8e-43 178.3 262 74.4
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.5e-41 173.3 274 73.0
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.3e-41 172.9 260 48.8
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 5.6e-41 172.2 218 83.0
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.3e-41 171.8 267 41.2
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 9.6e-41 171.4 264 72.7
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.3e-40 171.0 224 81.2
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 6.2e-40 168.7 258 72.1
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 8.1e-40 168.3 250 72.0
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.8e-39 167.2 256 72.3
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 6.9e-39 165.2 245 67.8
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 1.2e-38 164.5 258 71.3
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.0e-38 163.7 239 79.5
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 2.0e-38 163.7 228 79.8
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 3.4e-38 162.9 242 75.2
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 4.4e-38 162.5 249 71.9
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 9.9e-38 161.4 258 70.2
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.3e-37 161.0 255 72.5
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.9e-37 159.8 256 73.0
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.4e-36 157.5 255 72.5
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.4e-36 155.6 263 66.5
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.4e-36 155.6 224 79.0
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 7.1e-36 155.2 245 72.7
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.7e-35 153.3 230 77.8
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 4.0e-31 139.4 237 73.0
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.9e-28 130.6 76 82.9
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 5.4e-28 129.0 210 78.1
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.7e-27 126.7 258 53.1
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 3.5e-27 126.3 214 76.6
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.1e-23 114.8 75 72.0
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.1e-23 113.2 91 62.6
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.7e-21 107.5 205 76.1
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.2e-21 107.1 266 62.4
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.8e-21 106.3 95 58.9
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.4e-20 104.4 76 69.7
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 1.9e-20 104.0 75 69.3
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.7e-19 100.1 271 60.9
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.3e-18 97.8 239 53.6
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 8.7e-18 95.1 80 66.2
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 4.8e-16 89.4 82 56.1
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.5e-14 84.3 55 78.2
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 2.4e-07 60.5 50 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 4.1e-07 59.7 255 55.3
AUR62028640 Chenopodium quinoa HOM05D000094 ORTHO05D001056 6.9e-07 58.9 83 42.2
AUR62008062 Chenopodium quinoa HOM05D000094 ORTHO05D001056 1.5e-06 57.8 83 39.8
Hund02810 Selenicereus undatus HOM05D000094 ORTHO05D001056 1.5e-06 57.8 77 41.6
HanXRQChr05g0162291 Helianthus annuus HOM05D004527 ORTHO05D005335 4.5e-06 56.2 70 48.6


User provided reference genes

Program Settings