Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00598 Eucalyptus grandis HOM05D007087 ORTHO05D008968 7.0e-66 253.8 131 100.0
Eucgr.I00599 Eucalyptus grandis HOM05D007087 ORTHO05D008968 5.1e-40 167.9 86 100.0
Actinidia16395 Actinidia chinensis HOM05D007087 ORTHO05D008968 6.2e-38 161.0 86 94.2
PGR102G1803 Punica granatum HOM05D007087 ORTHO05D008968 8.1e-38 160.6 86 95.3
CSS0037594 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.4e-37 159.8 86 95.3
CSS0044951 Camellia sinensis var. sinensis HOM05D007087 ORTHO05D008968 1.4e-37 159.8 86 95.3
COL.COLO4_11683 Corchorus olitorius HOM05D007087 ORTHO05D008968 4.0e-37 158.3 86 94.2
QL06p037367 Quercus lobata HOM05D007087 ORTHO05D008968 4.0e-37 158.3 85 95.3
Dinv27003 Davidia involucrata HOM05D007087 ORTHO05D008968 5.3e-37 157.9 86 93.0
Actinidia22784 Actinidia chinensis HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 91.9
Cfa006833 Carpinus fangiana HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 94.2
Ca_13466_v3 Cicer arietinum L. HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 94.2
Glyma.01G020200 Glycine max HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 94.2
Hma1.2p1_0080F.1_g042080 Hydrangea macrophylla HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 94.2
Lj2g0010143 Lotus japonicus HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 94.2
Medtr5g030935 Medicago truncatula HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 94.2
Phvul.002G143500 Phaseolus vulgaris HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 94.2
Psat2g134040 Pisum sativum HOM05D007087 ORTHO05D008968 6.9e-37 157.5 86 94.2
Gohir.A11G208700 Gossypium hirsutum HOM05D007087 ORTHO05D008968 9.0e-37 157.1 86 93.0
Gohir.D11G214800 Gossypium hirsutum HOM05D007087 ORTHO05D008968 9.0e-37 157.1 86 93.0
MD01G1044400 Malus domestica HOM05D007087 ORTHO05D008968 1.5e-36 156.4 83 95.2
Prupe.6G209300 Prunus persica HOM05D007087 ORTHO05D008968 1.5e-36 156.4 83 95.2
TPR.G37071 Trifolium pratense HOM05D007087 ORTHO05D008968 1.5e-36 156.4 86 93.0
vmacro18037 Vaccinium macrocarpon HOM05D007087 ORTHO05D008968 1.5e-36 156.4 86 91.9
Oeu024989.2 Olea europaea HOM05D007087 ORTHO05D008968 2.0e-36 156.0 86 91.9
FvH4_1g19040 Fragaria vesca HOM05D007087 ORTHO05D008968 2.6e-36 155.6 83 95.2
FAN23G1122 Fragaria x ananassa HOM05D007087 ORTHO05D008968 2.6e-36 155.6 83 95.2
FAN26G0060 Fragaria x ananassa HOM05D007087 ORTHO05D008968 2.6e-36 155.6 83 95.2
FAN28G2302 Fragaria x ananassa HOM05D007087 ORTHO05D008968 2.6e-36 155.6 83 95.2
Glyma.09G202200 Glycine max HOM05D007087 ORTHO05D008968 2.6e-36 155.6 86 93.0
RcHm_v2.0_Chr2g0110041 Rosa chinensis HOM05D007087 ORTHO05D008968 2.6e-36 155.6 83 95.2
arahy.Tifrunner.gnm1.ann1.6G1T2R Arachis hypogaea HOM05D007087 ORTHO05D008968 3.4e-36 155.2 86 93.0
arahy.Tifrunner.gnm1.ann1.NU08EI Arachis hypogaea HOM05D007087 ORTHO05D008968 3.4e-36 155.2 86 93.0
MBI16_g36494_MAGBIO Magnolia biondii HOM05D007087 ORTHO05D008968 3.4e-36 155.2 84 91.7
Gorai.007G230500 Gossypium raimondii HOM05D007087 ORTHO05D008968 4.4e-36 154.8 84 92.9
Lsat_1_v5_gn_4_156341 Lactuca sativa HOM05D007087 ORTHO05D008968 4.4e-36 154.8 86 91.9
TAR376G1208 Trochodendron aralioides HOM05D007087 ORTHO05D008968 4.4e-36 154.8 83 94.0
Ciclev10027006m.g Citrus clementina HOM05D007087 ORTHO05D008968 5.8e-36 154.5 86 93.0
Thecc.01G084300 Theobroma cacao HOM05D007087 ORTHO05D008968 5.8e-36 154.5 86 91.9
CiPaw.07G042900 Carya illinoinensis HOM05D007087 ORTHO05D008968 7.6e-36 154.1 86 93.0
Duzib264G0202 Durio zibethinus HOM05D007087 ORTHO05D008968 7.6e-36 154.1 83 94.0
TWI53G1267 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 7.6e-36 154.1 86 93.0
TWI77G0839 Tripterygium wilfordii HOM05D007087 ORTHO05D008968 7.6e-36 154.1 83 94.0
Cpa.g.sc129.16 Carica papaya HOM05D007087 ORTHO05D008968 9.9e-36 153.7 86 91.9
ECA232G4432 Erigeron canadensis HOM05D007087 ORTHO05D008968 1.3e-35 153.3 86 91.9
HanXRQChr09g0262861 Helianthus annuus HOM05D007087 ORTHO05D008968 1.3e-35 153.3 86 91.9
THA.LOC104824923 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 1.3e-35 153.3 86 88.4
HanXRQChr11g0324431 Helianthus annuus HOM05D007087 ORTHO05D008968 1.7e-35 152.9 86 91.9
AL4G12190 Arabidopsis lyrata HOM05D007087 ORTHO05D008968 2.2e-35 152.5 86 89.5
AT2G22640 Arabidopsis thaliana HOM05D007087 ORTHO05D008968 2.2e-35 152.5 86 89.5
BcaB06g27810 Brassica carinata HOM05D007087 ORTHO05D008968 2.2e-35 152.5 86 89.5
Carub.0004s0180 Capsella rubella HOM05D007087 ORTHO05D008968 2.2e-35 152.5 86 89.5
Thhalv10000402m.g Eutrema salsugineum HOM05D007087 ORTHO05D008968 2.2e-35 152.5 86 89.5
Manes.12G121500 Manihot esculenta HOM05D007087 ORTHO05D008968 2.2e-35 152.5 86 89.5
Sc16g0000740 Simmondsia chinensis HOM05D007087 ORTHO05D008968 2.2e-35 152.5 83 92.8
Atru.chr3.1157 Acer truncatum HOM05D007087 ORTHO05D008968 2.9e-35 152.1 83 94.0
Atru.chr3.1173 Acer truncatum HOM05D007087 ORTHO05D008968 2.9e-35 152.1 83 94.0
CiPaw.08G145100 Carya illinoinensis HOM05D007087 ORTHO05D008968 2.9e-35 152.1 86 90.7
Duzib147G0219 Durio zibethinus HOM05D007087 ORTHO05D008968 2.9e-35 152.1 83 92.8
THA.LOC104807661 Tarenaya hassleriana HOM05D007087 ORTHO05D008968 4.9e-35 151.4 83 90.4
MELO3C007697.2 Cucumis melo HOM05D007087 ORTHO05D008968 8.4e-35 150.6 86 89.5
Lalb_Chr05g0216201 Lupinus albus HOM05D007087 ORTHO05D008968 8.4e-35 150.6 86 89.5
Lalb_Chr09g0325791 Lupinus albus HOM05D007087 ORTHO05D008968 1.4e-34 149.8 86 90.7
TAR625G1164 Trochodendron aralioides HOM05D007087 ORTHO05D008968 1.4e-34 149.8 83 90.4
EL10Ac6g13306 Beta vulgaris HOM05D007087 ORTHO05D008968 1.9e-34 149.4 83 89.2
Aqoxy5G01405 Aquilegia oxysepala HOM05D007087 ORTHO05D008968 2.4e-34 149.1 88 87.5
BcaC02g08628 Brassica carinata HOM05D007087 ORTHO05D008968 5.4e-34 147.9 87 88.5
A04p17120 Brassica napus HOM05D007087 ORTHO05D008968 5.4e-34 147.9 87 88.5
C04p51930 Brassica napus HOM05D007087 ORTHO05D008968 5.4e-34 147.9 87 88.5
BolC4t26765H Brassica oleracea HOM05D007087 ORTHO05D008968 5.4e-34 147.9 87 88.5
BraA04t17341Z Brassica rapa HOM05D007087 ORTHO05D008968 5.4e-34 147.9 87 88.5
AUR62005889 Chenopodium quinoa HOM05D007087 ORTHO05D008968 5.4e-34 147.9 83 88.0
Migut.L00449 Erythranthe guttata HOM05D007087 ORTHO05D008968 4.6e-33 144.8 83 86.7
Hund16615 Selenicereus undatus HOM05D007087 ORTHO05D008968 4.6e-33 144.8 79 91.1
PSO017G4672 Papaver somniferum HOM05D007087 ORTHO05D008968 1.3e-32 143.3 85 87.1
PSO478G0358 Papaver somniferum HOM05D007087 ORTHO05D008968 1.3e-32 143.3 85 87.1
CAN.G11.24 Capsicum annuum HOM05D007087 ORTHO05D008968 6.6e-32 141.0 86 82.6
CDE01G0651 Ceratophyllum demersum HOM05D007087 ORTHO05D008968 1.5e-31 139.8 86 80.2
Zm00001eb259430 Zea mays HOM05D007087 ORTHO05D008968 3.3e-31 138.7 84 79.8
Potri.014G010000 Populus trichocarpa HOM05D007087 ORTHO05D008968 4.8e-30 134.8 92 75.0
Sp4g01675 Schrenkiella parvula HOM05D007087 ORTHO05D008968 1.1e-29 133.7 72 93.1
CsaV3_6G044750 Cucumis sativus L. HOM05D007087 ORTHO05D008968 1.8e-29 132.9 72 93.1
Solyc03g043720.4 Solanum lycopersicum HOM05D007087 ORTHO05D008968 6.9e-29 131.0 86 79.1
Sopen03g007570 Solanum pennellii HOM05D007087 ORTHO05D008968 6.9e-29 131.0 86 79.1
PGSC0003DMG400016688 Solanum tuberosum HOM05D007087 ORTHO05D008968 6.9e-29 131.0 86 79.1
Dinv36975 Davidia involucrata HOM05D007087 ORTHO05D008968 9.0e-29 130.6 73 91.8
ATR0800G005 Amborella trichopoda HOM05D007087 ORTHO05D008968 1.5e-28 129.8 78 84.6
Cc07_g07910 Coffea canephora HOM05D007087 ORTHO05D008968 1.5e-28 129.8 83 80.7
Peaxi162Scf00118g00061 Petunia axillaris HOM05D007087 ORTHO05D008968 1.5e-28 129.8 84 79.8
Nitab4.5_0000465g0110 Nicotiana tabacum HOM05D007087 ORTHO05D008968 2.6e-28 129.0 86 79.1
A09p57350 Brassica napus HOM05D007087 ORTHO05D008968 2.2e-27 125.9 85 77.6
BraA09t41128Z Brassica rapa HOM05D007087 ORTHO05D008968 2.2e-27 125.9 85 77.6
ClCG01G018190 Citrullus lanatus HOM05D007087 ORTHO05D008968 3.8e-27 125.2 73 89.0
COL.COLO4_02760 Corchorus olitorius HOM05D007087 ORTHO05D008968 8.4e-27 124.0 83 80.7
Os02g0829900 Oryza sativa ssp. japonica HOM05D007087 ORTHO05D008968 1.1e-26 123.6 86 74.4
Sed0015245 Sechium edule HOM05D007087 ORTHO05D008968 1.1e-26 123.6 86 74.4
Sabra14G0004400 Salix brachista HOM05D007087 ORTHO05D008968 4.2e-26 121.7 73 79.5
BcaB08g35111 Brassica carinata HOM05D007087 ORTHO05D008968 1.6e-25 119.8 93 68.8
Sabra14G0001400 Salix brachista HOM05D007087 ORTHO05D008968 1.6e-25 119.8 75 77.3
Nitab4.5_0008656g0010 Nicotiana tabacum HOM05D007087 ORTHO05D008968 1.3e-19 100.1 86 66.3
AagrBONN_evm.TU.Sc2ySwM_344.2813 Anthoceros agrestis HOM05D007087 ORTHO05D008968 1.7e-19 99.8 85 57.6
Pp3c8_2740 Physcomitrium patens HOM05D007087 ORTHO05D008968 2.2e-19 99.4 71 67.6
Mapoly0132s0041 Marchantia polymorpha HOM05D007087 ORTHO05D008968 6.5e-19 97.8 72 65.3
Nn5g29785 Nelumbo nucifera HOM05D007087 ORTHO05D008968 1.3e-16 90.1 63 74.6
FAN19G2569 Fragaria x ananassa HOM05D007087 ORTHO05D008968 1.1e-15 87.0 48 91.7
Aa31LG7G14170 Aethionema arabicum HOM05D007087 ORTHO05D008968 1.9e-15 86.3 44 93.2
SMO144G0170 Selaginella moellendorffii HOM05D007087 ORTHO05D008968 5.7e-15 84.7 69 55.1
unitig_32.g10648 Utricularia gibba HOM05D007087 ORTHO05D008968 8.2e-14 80.9 51 78.4
Actinidia36375 Actinidia chinensis HOM05D007087 ORTHO05D008968 1.8e-13 79.7 68 60.3
SEGI_40703 Sequoiadendron giganteum HOM05D007087 ORTHO05D008968 1.1e-07 60.5 64 40.6
Nitab4.5_0000465g0080 Nicotiana tabacum HOM05D007087 ORTHO05D008968 7.4e-07 57.8 33 81.8


User provided reference genes

Program Settings