Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 5.4e-67 258.1 190 100.0
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 4.8e-47 191.8 150 74.0
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 1.5e-45 186.8 152 73.7
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 5.8e-45 184.9 147 72.8
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 9.9e-45 184.1 153 70.6
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 9.9e-45 184.1 151 75.5
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 2.2e-44 183.0 151 72.8
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 2.9e-44 182.6 151 72.2
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 6.4e-44 181.4 151 72.2
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 1.4e-43 180.3 151 68.9
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 1.4e-43 180.3 151 70.9
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 2.4e-43 179.5 151 70.2
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 7.1e-43 177.9 153 69.9
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 9.3e-43 177.6 153 68.0
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 2.1e-42 176.4 150 68.0
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 2.7e-42 176.0 149 70.5
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 3.5e-42 175.6 153 69.9
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 3.5e-42 175.6 153 69.9
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 7.9e-42 174.5 153 68.6
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 7.9e-42 174.5 153 69.9
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 7.9e-42 174.5 153 69.3
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 1.3e-41 173.7 149 65.8
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 1.3e-41 173.7 151 68.9
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 2.3e-41 172.9 147 69.4
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 2.3e-41 172.9 115 80.9
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 2.3e-41 172.9 151 70.2
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 5.1e-41 171.8 153 68.6
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 5.1e-41 171.8 117 82.9
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 5.1e-41 171.8 152 69.1
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 8.7e-41 171.0 147 67.3
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 1.1e-40 170.6 151 69.5
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 1.1e-40 170.6 150 69.3
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 1.9e-40 169.9 153 65.4
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 1.9e-40 169.9 119 80.7
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 2.5e-40 169.5 150 65.3
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 4.3e-40 168.7 152 68.4
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 4.3e-40 168.7 112 80.4
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 4.3e-40 168.7 149 65.8
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 5.6e-40 168.3 154 70.1
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 7.4e-40 167.9 117 77.8
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 7.4e-40 167.9 145 67.6
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 1.6e-39 166.8 112 82.1
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 1.6e-39 166.8 112 83.0
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 1.6e-39 166.8 147 68.0
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 2.8e-39 166.0 112 82.1
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 2.8e-39 166.0 113 81.4
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 3.7e-39 165.6 150 63.3
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 4.8e-39 165.2 114 77.2
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 8.1e-39 164.5 149 65.1
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.1e-38 164.1 150 64.7
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 1.1e-38 164.1 153 69.9
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.4e-38 163.7 150 64.7
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 2.4e-38 162.9 147 69.4
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 2.4e-38 162.9 114 77.2
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 3.1e-38 162.5 147 66.0
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 3.1e-38 162.5 150 67.3
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 4.0e-38 162.2 149 63.8
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 4.0e-38 162.2 151 66.9
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 5.3e-38 161.8 154 69.5
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 5.3e-38 161.8 154 69.5
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 5.3e-38 161.8 154 69.5
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 5.3e-38 161.8 147 67.3
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 6.9e-38 161.4 153 66.0
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 6.9e-38 161.4 154 69.5
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 9.0e-38 161.0 153 66.0
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 1.2e-37 160.6 149 64.4
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 1.2e-37 160.6 147 66.7
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 1.2e-37 160.6 153 64.1
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 1.2e-37 160.6 153 62.1
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 1.2e-37 160.6 113 75.2
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 1.5e-37 160.2 116 75.0
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 1.5e-37 160.2 116 75.0
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 1.5e-37 160.2 113 77.0
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 2.0e-37 159.8 151 66.2
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 2.0e-37 159.8 147 63.3
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 3.4e-37 159.1 153 66.0
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 3.4e-37 159.1 153 66.0
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 3.4e-37 159.1 149 62.4
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 3.4e-37 159.1 149 62.4
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 4.5e-37 158.7 153 66.0
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 4.5e-37 158.7 150 63.3
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 4.5e-37 158.7 114 75.4
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 5.8e-37 158.3 115 73.0
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 7.6e-37 157.9 153 62.1
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 7.6e-37 157.9 149 62.4
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 1.0e-36 157.5 153 65.4
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 4.9e-36 155.2 147 61.2
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 6.5e-36 154.8 114 73.7
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 8.4e-36 154.5 153 68.6
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 8.4e-36 154.5 153 68.6
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 8.4e-36 154.5 116 70.7
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 1.4e-35 153.7 117 76.1
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 2.5e-35 152.9 129 67.4
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 2.5e-35 152.9 129 67.4
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 2.5e-35 152.9 118 76.3
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 9.3e-35 151.0 105 77.1
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 1.6e-34 150.2 149 61.7
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 1.6e-34 150.2 149 61.7
TWI53G1299 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 6.0e-34 148.3 153 63.4
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 7.9e-34 147.9 147 63.3
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 1.0e-33 147.5 128 64.8
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 1.3e-33 147.1 146 61.6
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 5.1e-33 145.2 107 73.8
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 1.5e-32 143.7 118 68.6
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 3.3e-32 142.5 108 77.8
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 4.8e-31 138.7 94 79.8
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 6.3e-31 138.3 264 42.4
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 1.4e-30 137.1 99 72.7
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 2.4e-30 136.3 94 75.5
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 6.9e-30 134.8 118 63.6
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 1.2e-29 134.0 99 70.7
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 2.0e-29 133.3 133 60.2
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 1.0e-25 120.9 97 67.0
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.3e-25 120.6 80 85.0
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.3e-25 120.6 80 85.0
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 3.0e-25 119.4 170 50.6
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 1.3e-23 114.0 98 59.2
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 2.8e-23 112.8 98 61.2
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 4.8e-23 112.1 98 63.3
Cfa002651 Carpinus fangiana HOM05D005870 ORTHO05D007216 5.0e-20 102.1 123 54.5
Haze_24920 Corylus avellana HOM05D005870 ORTHO05D007216 1.4e-19 100.5 92 64.1
HPP92_013107 Vanilla planifolia HOM05D005870 ORTHO05D007216 1.4e-19 100.5 104 51.9
SGA_v2.0_scaffold111G31512 Striga asiatica HOM05D005870 ORTHO05D007216 5.1e-17 92.0 99 55.6
MSTRG.15716 Avicennia marina HOM05D005870 ORTHO05D007216 6.7e-17 91.7 66 74.2
CBR_g8034 Chara braunii HOM05D005870 ORTHO05D007216 4.8e-15 85.5 89 48.3
Lj5C62T6 Lonicera japonica HOM05D005870 ORTHO05D007216 6.3e-15 85.1 76 67.1
Actinidia06560 Actinidia chinensis HOM05D005870 ORTHO05D007216 4.1e-14 82.4 57 75.4
HPP92_013094 Vanilla planifolia HOM05D005870 ORTHO05D007216 6.9e-14 81.6 61 67.2
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 2.6e-13 79.7 62 72.6
ATR0782G037 Amborella trichopoda HOM05D005870 ORTHO05D007216 2.9e-12 76.3 50 78.0
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 1.1e-11 74.3 76 60.5
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 7.2e-11 71.6 55 80.0
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 2.3e-09 66.6 62 71.0
MCO09G004 Micromonas commoda HOM05D005870 ORTHO05D007216 4.1e-06 55.8 73 39.7


User provided reference genes

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