Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00407 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.1e-40 169.5 79 100.0
Eucgr.I00397 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.0e-11 71.6 78 43.6
CiPaw.01G027300 Carya illinoinensis HOM05D000395 ORTHO05D000088 4.3e-10 67.8 59 49.2
Manes.07G115100 Manihot esculenta HOM05D000395 ORTHO05D000088 2.1e-09 65.5 74 40.5
arahy.Tifrunner.gnm1.ann1.KVNU80 Arachis hypogaea HOM05D000395 ORTHO05D000088 3.7e-09 64.7 75 46.7
TPR.G2835 Trifolium pratense HOM05D000395 ORTHO05D000088 8.1e-09 63.5 60 48.3
arahy.Tifrunner.gnm1.ann1.T57XL4 Arachis hypogaea HOM05D000395 ORTHO05D000088 1.4e-08 62.8 65 46.2
QL02p075828 Quercus lobata HOM05D000395 ORTHO05D000088 1.4e-08 62.8 58 48.3
arahy.Tifrunner.gnm1.ann1.335W22 Arachis hypogaea HOM05D000395 ORTHO05D000088 2.4e-08 62.0 56 53.6
Eucgr.I00399 Eucalyptus grandis HOM05D041455 ORTHO05D000088 2.4e-08 62.0 77 44.2
Eucgr.I00400 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.4e-08 62.0 77 44.2
Eucgr.D00268 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.1e-08 61.6 65 43.1
Eucgr.G00890 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.1e-08 61.6 77 39.0
Eucgr.G00888 Eucalyptus grandis HOM05D000395 ORTHO05D000088 4.0e-08 61.2 78 39.7
VMungo0720G0733 Vigna mungo HOM05D000212 ORTHO05D005509 4.0e-08 61.2 81 39.5
Cpa.g.sc132.62 Carica papaya HOM05D000395 ORTHO05D000088 5.3e-08 60.8 63 47.6
AUR62000527 Chenopodium quinoa HOM05D000823 ORTHO05D000088 5.3e-08 60.8 66 43.9
Gohir.1Z049472 Gossypium hirsutum HOM05D000395 ORTHO05D000088 5.3e-08 60.8 63 46.0
Lalb_Chr06g0163601 Lupinus albus HOM05D000395 ORTHO05D000088 5.3e-08 60.8 62 45.2
Eucgr.G01245 Eucalyptus grandis HOM05D000395 ORTHO05D000088 6.9e-08 60.5 74 40.5
Lj7A19G27 Lonicera japonica HOM05D000395 ORTHO05D000088 6.9e-08 60.5 79 44.3
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 6.9e-08 60.5 56 50.0
Manes.10G031300 Manihot esculenta HOM05D000395 ORTHO05D000088 9.0e-08 60.1 74 40.5
AUR62006874 Chenopodium quinoa HOM05D000823 ORTHO05D000088 1.2e-07 59.7 66 42.4
arahy.Tifrunner.gnm1.ann1.ICSV9P Arachis hypogaea HOM05D000395 ORTHO05D000088 1.5e-07 59.3 64 43.8
Eucgr.G01238 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.5e-07 59.3 79 40.5
Eucgr.G01240 Eucalyptus grandis HOM05D000395 ORTHO05D000088 1.5e-07 59.3 79 40.5
Gorai.004G260200 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.5e-07 59.3 57 42.1
Lalb_Chr10g0095141 Lupinus albus HOM05D000395 ORTHO05D000088 1.5e-07 59.3 63 42.9
PGR004G0726 Punica granatum HOM05D000395 ORTHO05D000088 1.5e-07 59.3 57 47.4
DCAR_003838 Daucus carota HOM05D000395 ORTHO05D000088 2.0e-07 58.9 61 47.5
Eucgr.B02808 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.0e-07 58.9 75 37.3
FAN23G2287 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.0e-07 58.9 79 45.6
FAN28G0051 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.0e-07 58.9 80 43.8
Gohir.A08G223600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.0e-07 58.9 57 40.4
Medtr8g103940 Medicago truncatula HOM05D000395 ORTHO05D000088 2.0e-07 58.9 61 42.6
Psat6g097800 Pisum sativum HOM05D000395 ORTHO05D000088 2.0e-07 58.9 59 44.1
Prupe.7G143500 Prunus persica HOM05D000395 ORTHO05D000088 2.0e-07 58.9 65 38.5
QL09p026061 Quercus lobata HOM05D000395 ORTHO05D000088 2.0e-07 58.9 57 47.4
VMungo1215G0226 Vigna mungo HOM05D000395 ORTHO05D000088 2.0e-07 58.9 61 42.6
Eucgr.D00269 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.6e-07 58.5 65 41.5
Lj7C16T11 Lonicera japonica HOM05D000395 ORTHO05D000088 2.6e-07 58.5 79 43.0
TPR.G11170 Trifolium pratense HOM05D000395 ORTHO05D000088 2.6e-07 58.5 58 44.8
TPR.G14798 Trifolium pratense HOM05D000395 ORTHO05D000088 2.6e-07 58.5 73 42.5
TAR381G0288 Trochodendron aralioides HOM05D000395 ORTHO05D000088 2.6e-07 58.5 77 39.0
Dinv27599 Davidia involucrata HOM05D000395 ORTHO05D000088 3.4e-07 58.2 65 46.2
Eucgr.G00889 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.4e-07 58.2 76 42.1
Manes.13G130900 Manihot esculenta HOM05D000395 ORTHO05D000088 3.4e-07 58.2 65 44.6
Prupe.7G143900 Prunus persica HOM05D000395 ORTHO05D000088 3.4e-07 58.2 60 48.3
QL06p043952 Quercus lobata HOM05D000395 ORTHO05D000088 3.4e-07 58.2 55 47.3
TPR.G14727 Trifolium pratense HOM05D000395 ORTHO05D000088 3.4e-07 58.2 54 48.1
TWI73G1024 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 3.4e-07 58.2 56 53.6
FvH4_1g14680 Fragaria vesca HOM05D000395 ORTHO05D000088 4.5e-07 57.8 80 40.0
FvH4_7g02010 Fragaria vesca HOM05D000395 ORTHO05D000088 4.5e-07 57.8 60 50.0
FAN06G4020 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.5e-07 57.8 60 50.0
Glyma.10G281300 Glycine max HOM05D000395 ORTHO05D000088 4.5e-07 57.8 59 49.2
Lj2g0006674 Lotus japonicus HOM05D000395 ORTHO05D000088 4.5e-07 57.8 55 50.9
QL09p026066 Quercus lobata HOM05D000395 ORTHO05D000088 4.5e-07 57.8 56 46.4
QL09p026080 Quercus lobata HOM05D000395 ORTHO05D000088 4.5e-07 57.8 35 68.6
QL09p026218 Quercus lobata HOM05D000395 ORTHO05D000088 4.5e-07 57.8 35 68.6
FAN19G3192 Fragaria x ananassa HOM05D000395 ORTHO05D000088 5.8e-07 57.4 60 50.0
Lj2g0007049 Lotus japonicus HOM05D000395 ORTHO05D000088 5.8e-07 57.4 55 50.9
PGR083G0852 Punica granatum HOM05D000395 ORTHO05D000088 5.8e-07 57.4 57 50.9
RhsimUnG0104100 Rhododendron simsii HOM05D000395 ORTHO05D000088 5.8e-07 57.4 75 42.7
RcHm_v2.0_Chr2g0103541 Rosa chinensis HOM05D000395 ORTHO05D000088 5.8e-07 57.4 75 40.0
DCAR_021667 Daucus carota HOM05D000395 ORTHO05D000088 7.6e-07 57.0 56 50.0
Lalb_Chr19g0126231 Lupinus albus HOM05D000395 ORTHO05D000088 9.9e-07 56.6 60 46.7
PSO675G3266 Papaver somniferum HOM05D000395 ORTHO05D000088 9.9e-07 56.6 56 46.4
QL10p039053 Quercus lobata HOM05D000395 ORTHO05D000088 9.9e-07 56.6 56 50.0
Thecc.04G036400 Theobroma cacao HOM05D000395 ORTHO05D000088 9.9e-07 56.6 60 45.0
TPR.G2870 Trifolium pratense HOM05D000395 ORTHO05D000088 9.9e-07 56.6 55 47.3
CANSAT01G1431 Cannabis sativa HOM05D000395 ORTHO05D000088 1.3e-06 56.2 77 36.4
Cfa015900 Carpinus fangiana HOM05D000395 ORTHO05D000088 1.3e-06 56.2 56 44.6
Lj2g0004829 Lotus japonicus HOM05D000395 ORTHO05D000088 1.3e-06 56.2 59 45.8
Lj5g0011145 Lotus japonicus HOM05D000395 ORTHO05D000088 1.3e-06 56.2 55 49.1
Lalb_Chr10g0095151 Lupinus albus HOM05D000395 ORTHO05D000088 1.3e-06 56.2 64 34.4
Medtr1g108780 Medicago truncatula HOM05D000395 ORTHO05D000088 1.3e-06 56.2 59 40.7
Medtr3g061350 Medicago truncatula HOM05D000395 ORTHO05D000088 1.3e-06 56.2 55 45.5
Psat5g163560 Pisum sativum HOM05D000395 ORTHO05D000088 1.3e-06 56.2 55 49.1
Prupe.7G044800 Prunus persica HOM05D000395 ORTHO05D000088 1.3e-06 56.2 61 39.3
TPR.G14716 Trifolium pratense HOM05D000395 ORTHO05D000088 1.3e-06 56.2 55 49.1
VMungo0720G2046 Vigna mungo HOM05D000395 ORTHO05D000088 1.3e-06 56.2 57 49.1
CANSAT01G2152 Cannabis sativa HOM05D000395 ORTHO05D000088 1.7e-06 55.8 41 58.5
CiPaw.06G020300 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.7e-06 55.8 39 61.5
CDE04G1562 Ceratophyllum demersum HOM05D000395 ORTHO05D000088 1.7e-06 55.8 55 49.1
Duzib147G0434 Durio zibethinus HOM05D000395 ORTHO05D000088 1.7e-06 55.8 59 49.2
Glyma.20G107900 Glycine max HOM05D000395 ORTHO05D000088 1.7e-06 55.8 55 47.3
Gohir.A04G121800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.7e-06 55.8 60 45.0
Gohir.D04G163100 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.7e-06 55.8 60 45.0
Gorai.012G151000 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.7e-06 55.8 60 45.0
Medtr3g061340 Medicago truncatula HOM05D000395 ORTHO05D000088 1.7e-06 55.8 54 46.3
Phvul.003G033400 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 1.7e-06 55.8 62 38.7
QL09p026069 Quercus lobata HOM05D000395 ORTHO05D000088 1.7e-06 55.8 57 47.4
QL09p026131 Quercus lobata HOM05D000395 ORTHO05D000088 1.7e-06 55.8 57 47.4
Sed0013260 Sechium edule HOM05D000395 ORTHO05D000088 1.7e-06 55.8 77 40.3
TPR.G14731 Trifolium pratense HOM05D000395 ORTHO05D000088 1.7e-06 55.8 55 49.1
VMungo0720G0704 Vigna mungo HOM05D000395 ORTHO05D000088 1.7e-06 55.8 79 38.0
FAN26G3456 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.2e-06 55.5 60 43.3
Glyma.20G108400 Glycine max HOM05D000395 ORTHO05D000088 2.2e-06 55.5 55 45.5
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.2e-06 55.5 59 42.4
Lalb_Chr19g0126241 Lupinus albus HOM05D000395 ORTHO05D000088 2.2e-06 55.5 60 43.3
PSO675G5977 Papaver somniferum HOM05D000395 ORTHO05D000088 2.2e-06 55.5 56 42.9
ClCG02G013110 Citrullus lanatus HOM05D000395 ORTHO05D000088 2.9e-06 55.1 58 46.6
Dinv26763 Davidia involucrata HOM05D000395 ORTHO05D000088 2.9e-06 55.1 77 42.9
Eucgr.B02809 Eucalyptus grandis HOM05D000395 ORTHO05D000088 2.9e-06 55.1 63 39.7
FvH4_1g29250 Fragaria vesca HOM05D000395 ORTHO05D000088 2.9e-06 55.1 60 48.3
FAN28G1435 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.9e-06 55.1 56 48.2
Gohir.A13G036700 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.9e-06 55.1 57 45.6
Gohir.D13G035000 Gossypium hirsutum HOM05D000395 ORTHO05D000088 2.9e-06 55.1 57 45.6
Gorai.013G039700 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.9e-06 55.1 57 45.6
Lj2g0003753 Lotus japonicus HOM05D000395 ORTHO05D000088 2.9e-06 55.1 55 49.1
RcHm_v2.0_Chr2g0134821 Rosa chinensis HOM05D000395 ORTHO05D000088 2.9e-06 55.1 58 46.6
TWI12G0040 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.9e-06 55.1 70 44.3
CANSAT56G1143 Cannabis sativa HOM05D019975 ORTHO05D000088 3.8e-06 54.7 41 56.1
ClCG02G013030 Citrullus lanatus HOM05D000395 ORTHO05D000088 3.8e-06 54.7 85 40.0
DCAR_003837 Daucus carota HOM05D000395 ORTHO05D000088 3.8e-06 54.7 56 46.4
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.8e-06 54.7 58 43.1
Glyma.18G155000 Glycine max HOM05D000395 ORTHO05D000088 3.8e-06 54.7 58 41.4
Lj7C16G12 Lonicera japonica HOM05D000395 ORTHO05D000088 3.8e-06 54.7 78 37.2
Lj6g0021528 Lotus japonicus HOM05D000395 ORTHO05D000088 3.8e-06 54.7 61 41.0
Rhsim02G0221100 Rhododendron simsii HOM05D000395 ORTHO05D000088 3.8e-06 54.7 73 45.2
RcHm_v2.0_Chr2g0118951 Rosa chinensis HOM05D000395 ORTHO05D000088 3.8e-06 54.7 75 40.0
Sed0016656 Sechium edule HOM05D000395 ORTHO05D000088 3.8e-06 54.7 85 40.0
Sopen02g015460 Solanum pennellii HOM05D009106 ORTHO05D010235 3.8e-06 54.7 50 52.0
Thecc.01G046900 Theobroma cacao HOM05D000395 ORTHO05D000088 3.8e-06 54.7 78 35.9
Thecc.02G092500 Theobroma cacao HOM05D000395 ORTHO05D000088 3.8e-06 54.7 57 45.6
CSS0005810 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 4.9e-06 54.3 55 43.6
Cfa015899 Carpinus fangiana HOM05D000395 ORTHO05D000088 4.9e-06 54.3 56 42.9
Cfa015901 Carpinus fangiana HOM05D000395 ORTHO05D000088 4.9e-06 54.3 55 45.5
ClCG02G013090 Citrullus lanatus HOM05D000395 ORTHO05D000088 4.9e-06 54.3 85 37.6
Duzib132G0290 Durio zibethinus HOM05D000395 ORTHO05D000088 4.9e-06 54.3 59 47.5
Eucgr.H02901 Eucalyptus grandis HOM05D000395 ORTHO05D000088 4.9e-06 54.3 56 41.1
Eucgr.I00465 Eucalyptus grandis HOM05D041455 ORTHO05D000088 4.9e-06 54.3 71 43.7
Gohir.D12G067800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.9e-06 54.3 59 42.4
Gorai.008G071200 Gossypium raimondii HOM05D000395 ORTHO05D000088 4.9e-06 54.3 59 42.4
Lj7C19G3 Lonicera japonica HOM05D000395 ORTHO05D000088 4.9e-06 54.3 78 37.2
TPR.G25510 Trifolium pratense HOM05D000395 ORTHO05D000088 4.9e-06 54.3 56 44.6
TWI09G0236 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.9e-06 54.3 61 44.3
TWI09G1538 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 4.9e-06 54.3 74 39.2
arahy.Tifrunner.gnm1.ann1.WFEC9T Arachis hypogaea HOM05D000395 ORTHO05D000088 6.4e-06 53.9 55 45.5
CANSAT01G0530 Cannabis sativa HOM05D000395 ORTHO05D000088 6.4e-06 53.9 58 44.8
CANSAT01G1900 Cannabis sativa HOM05D019975 ORTHO05D000088 6.4e-06 53.9 41 56.1
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.4e-06 53.9 60 46.7
MELO3C020914.2 Cucumis melo HOM05D000395 ORTHO05D000088 6.4e-06 53.9 85 40.0
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 6.4e-06 53.9 61 39.3
Eucgr.L02216 Eucalyptus grandis HOM05D000395 ORTHO05D000088 6.4e-06 53.9 41 48.8
FvH4_1g14670 Fragaria vesca HOM05D000395 ORTHO05D000088 6.4e-06 53.9 55 43.6
FAN19G3035 Fragaria x ananassa HOM05D000395 ORTHO05D000088 6.4e-06 53.9 55 43.6
Lj2g0028147 Lotus japonicus HOM05D000395 ORTHO05D000088 6.4e-06 53.9 42 52.4
Medtr3g061370 Medicago truncatula HOM05D000395 ORTHO05D000088 6.4e-06 53.9 55 43.6
Phvul.007G019700 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 6.4e-06 53.9 62 41.9
Prupe.7G039600 Prunus persica HOM05D000395 ORTHO05D000088 6.4e-06 53.9 58 48.3
PGR031G1638 Punica granatum HOM05D000395 ORTHO05D000088 6.4e-06 53.9 54 44.4
Thecc.02G092700 Theobroma cacao HOM05D000395 ORTHO05D000088 6.4e-06 53.9 57 43.9
Cpa.g.sc10.140 Carica papaya HOM05D000395 ORTHO05D000088 8.4e-06 53.5 57 42.1
Migut.H02193 Erythranthe guttata HOM05D000395 ORTHO05D000088 8.4e-06 53.5 56 44.6
Eucgr.G01639 Eucalyptus grandis HOM05D000395 ORTHO05D000088 8.4e-06 53.5 77 35.1
FvH4_1g14700 Fragaria vesca HOM05D000395 ORTHO05D000088 8.4e-06 53.5 56 48.2
FAN19G1815 Fragaria x ananassa HOM05D000395 ORTHO05D000088 8.4e-06 53.5 56 48.2
MD02G1160300 Malus domestica HOM05D000395 ORTHO05D000088 8.4e-06 53.5 56 48.2
Manes.07G115000 Manihot esculenta HOM05D000395 ORTHO05D000088 8.4e-06 53.5 62 48.4
Manes.13G130950 Manihot esculenta HOM05D000395 ORTHO05D000088 8.4e-06 53.5 61 41.0
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 8.4e-06 53.5 54 46.3
TPR.G27879 Trifolium pratense HOM05D000395 ORTHO05D000088 8.4e-06 53.5 54 42.6


User provided reference genes

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