Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.3e-97 359.8 181 100.0
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 6.7e-67 257.7 159 79.9
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 1.1e-64 250.4 162 77.2
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 1.1e-64 250.4 162 77.2
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 5.9e-63 244.6 160 75.0
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 7.7e-63 244.2 160 74.4
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 1.3e-62 243.4 165 75.2
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.1e-61 240.4 163 73.6
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.1e-61 240.4 163 73.6
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.1e-61 240.4 163 73.6
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.5e-61 240.0 163 74.2
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 2.5e-61 239.2 163 73.6
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 2.5e-61 239.2 163 72.4
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 4.2e-61 238.4 163 73.6
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 5.5e-61 238.0 163 74.2
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 7.2e-61 237.7 179 68.2
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 9.4e-61 237.3 160 72.5
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 9.4e-61 237.3 160 73.1
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 1.2e-60 236.9 162 72.8
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.2e-60 236.9 162 75.3
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 2.7e-60 235.7 163 71.8
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 3.6e-60 235.3 157 73.9
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 6.1e-60 234.6 160 73.8
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 6.1e-60 234.6 160 73.8
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.0e-59 233.8 163 70.6
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.8e-59 233.0 163 73.0
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 1.2e-58 230.3 161 72.0
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.2e-58 230.3 163 72.4
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 1.5e-58 229.9 161 71.4
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 1.5e-58 229.9 163 71.2
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.5e-58 229.9 163 69.3
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.0e-58 229.6 156 73.1
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 2.6e-58 229.2 159 72.3
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 3.3e-58 228.8 161 72.0
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 3.3e-58 228.8 163 71.2
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 4.4e-58 228.4 161 70.8
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.4e-58 228.4 161 70.2
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 4.4e-58 228.4 161 70.2
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 2.8e-57 225.7 163 70.6
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 3.7e-57 225.3 156 73.1
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 3.7e-57 225.3 155 72.9
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 3.7e-57 225.3 158 70.9
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 4.8e-57 224.9 165 69.1
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 8.3e-57 224.2 163 71.2
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 8.3e-57 224.2 181 65.2
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.4e-56 223.4 157 68.8
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.1e-56 222.2 157 69.4
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 9.1e-56 220.7 157 68.8
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 1.2e-55 220.3 161 69.6
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 2.7e-55 219.2 160 70.0
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 3.5e-55 218.8 159 71.1
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 1.3e-54 216.9 156 67.9
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 1.7e-54 216.5 160 68.8
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 3.8e-54 215.3 163 68.1
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.5e-53 213.4 163 68.1
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 1.5e-53 213.4 163 68.1
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 1.5e-53 213.4 161 65.8
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 1.9e-53 213.0 166 65.1
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.5e-53 212.6 166 65.1
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 2.5e-53 212.6 163 66.9
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 2.5e-53 212.6 149 70.5
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 7.2e-53 211.1 160 63.8
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 2.1e-52 209.5 154 68.2
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.1e-52 209.5 163 66.9
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 3.6e-52 208.8 156 64.7
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 3.6e-52 208.8 161 66.5
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 1.0e-51 207.2 165 64.2
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 1.8e-51 206.5 161 64.6
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.3e-51 206.1 163 66.3
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 2.3e-51 206.1 161 64.6
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 4.0e-51 205.3 156 66.0
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 4.0e-51 205.3 158 68.4
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 4.0e-51 205.3 152 69.1
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 6.8e-51 204.5 165 63.0
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 1.5e-50 203.4 158 67.1
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 2.0e-50 203.0 161 61.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 2.6e-50 202.6 163 64.4
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 2.6e-50 202.6 153 67.3
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.7e-49 199.9 150 62.7
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 2.2e-49 199.5 161 65.2
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 2.2e-49 199.5 156 64.7
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 2.8e-49 199.1 163 63.2
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 4.8e-49 198.4 158 64.6
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 4.8e-49 198.4 126 78.6
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 1.1e-48 197.2 159 63.5
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 1.8e-48 196.4 159 64.2
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 5.4e-48 194.9 152 62.5
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 5.4e-48 194.9 161 61.5
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.2e-47 193.7 156 60.9
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 2.7e-47 192.6 178 59.0
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 5.9e-47 191.4 163 60.1
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.7e-46 189.9 106 90.6
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 1.7e-46 189.9 163 61.3
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 2.3e-46 189.5 153 62.1
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 1.1e-45 187.2 150 62.7
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 4.2e-45 185.3 152 62.5
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 2.8e-44 182.6 160 55.6
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.6e-44 182.2 163 57.7
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 6.1e-44 181.4 153 58.8
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 1.8e-43 179.9 163 57.7
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.2e-43 178.3 156 55.8
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 6.3e-41 171.4 121 71.9
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 3.1e-40 169.1 113 74.3
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 4.1e-40 168.7 159 54.7
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.9e-38 162.5 159 54.1
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 7.3e-37 157.9 159 50.9
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 1.6e-36 156.8 159 50.9
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 2.8e-36 156.0 159 49.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 2.3e-35 152.9 159 49.7
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.2e-34 150.6 159 48.4
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 7.5e-34 147.9 159 49.1
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 2.2e-33 146.4 146 55.5
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 3.2e-32 142.5 159 47.2
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 3.5e-31 139.0 159 47.2
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.6e-31 138.7 111 64.0
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.7e-30 136.7 159 45.9
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 5.0e-30 135.2 159 45.3
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 5.0e-30 135.2 159 45.3
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 6.6e-30 134.8 159 45.3
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 5.6e-29 131.7 159 44.7
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 4.7e-28 128.6 159 43.4
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 4.7e-28 128.6 159 43.4
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 1.4e-27 127.1 107 69.2
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 2.0e-26 123.2 84 72.6
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.4e-26 122.5 83 74.7
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 3.2e-24 115.9 76 73.7
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 4.1e-24 115.5 139 43.9
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 4.1e-24 115.5 122 50.8
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 4.1e-24 115.5 86 68.6
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 2.1e-23 113.2 82 72.0
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.2e-20 104.0 87 56.3
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.9e-17 92.0 76 55.3
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.4e-17 91.7 81 54.3
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.4e-17 91.7 76 55.3
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 3.5e-15 85.9 83 57.8
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 6.6e-14 81.6 66 63.6
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 8.9e-11 71.2 131 33.6
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 1.4e-08 63.9 127 34.6
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 1.9e-08 63.5 121 36.4
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 3.5e-07 59.3 47 63.8


User provided reference genes

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