Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 3.5e-46 188.0 97 100.0
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.4e-18 95.5 98 50.0
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 3.1e-18 95.1 90 50.0
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 6.9e-18 94.0 99 50.5
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.9e-18 94.0 97 51.5
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.2e-17 93.2 91 50.5
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.0e-17 92.4 98 52.0
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 5.8e-17 90.9 101 48.5
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 5.8e-17 90.9 99 47.5
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 5.8e-17 90.9 93 49.5
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.6e-17 90.5 95 45.3
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.0e-16 90.1 91 45.1
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.0e-16 90.1 95 46.3
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-16 89.7 86 51.2
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.7e-16 89.4 92 50.0
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-16 89.4 97 48.5
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.7e-16 89.4 94 51.1
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.7e-16 89.4 86 51.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.2e-16 89.0 94 48.9
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.2e-16 89.0 93 50.5
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 3.8e-16 88.2 93 47.3
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.9e-16 87.8 90 46.7
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.9e-16 87.8 84 52.4
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 4.9e-16 87.8 93 51.6
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 6.5e-16 87.4 90 45.6
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.1e-15 86.7 102 40.2
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 1.1e-15 86.7 91 47.3
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 1.1e-15 86.7 91 47.3
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-15 86.7 95 50.5
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 2.5e-15 85.5 93 49.5
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.2e-15 85.1 87 46.0
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 3.2e-15 85.1 96 46.9
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 3.2e-15 85.1 91 45.1
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 7.1e-15 84.0 94 50.0
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 9.3e-15 83.6 92 47.8
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 9.3e-15 83.6 93 44.1
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 9.3e-15 83.6 95 46.3
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 9.3e-15 83.6 71 52.1
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 9.3e-15 83.6 93 46.2
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 9.3e-15 83.6 91 47.3
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 9.3e-15 83.6 100 45.0
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-14 82.8 95 43.2
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-14 82.8 95 43.2
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.6e-14 82.8 95 43.2
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 2.7e-14 82.0 80 50.0
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 4.6e-14 81.3 98 45.9
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 6.0e-14 80.9 98 42.9
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 7.9e-14 80.5 96 47.9
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.9e-14 80.5 108 40.7
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 7.9e-14 80.5 92 44.6
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 1.0e-13 80.1 94 45.7
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 1.0e-13 80.1 94 45.7
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.3e-13 79.7 95 46.3
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.3e-13 79.7 108 39.8
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-13 79.7 95 42.1
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-13 79.7 81 44.4
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.3e-13 79.7 93 47.3
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 1.8e-13 79.3 80 48.8
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 1.8e-13 79.3 96 41.7
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.8e-13 79.3 76 51.3
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.8e-13 79.3 81 44.4
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-13 79.3 110 40.9
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.0e-13 78.6 80 45.0
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 3.0e-13 78.6 83 48.2
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 3.9e-13 78.2 82 41.5
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.9e-13 78.2 94 41.5
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 5.1e-13 77.8 96 42.7
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 5.1e-13 77.8 80 45.0
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.1e-13 77.8 74 43.2
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 6.7e-13 77.4 93 39.8
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 6.7e-13 77.4 93 47.3
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 6.7e-13 77.4 96 42.7
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 6.7e-13 77.4 96 42.7
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 8.7e-13 77.0 90 44.4
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.1e-12 76.6 94 41.5
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-12 76.6 93 47.3
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.1e-12 76.6 99 41.4
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.5e-12 76.3 80 45.0
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.5e-12 76.3 89 42.7
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.5e-12 76.3 69 50.7
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-12 76.3 78 48.7
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 1.5e-12 76.3 92 44.6
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 2.5e-12 75.5 93 44.1
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 87 43.7
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 87 43.7
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 2.5e-12 75.5 85 44.7
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 3.3e-12 75.1 85 43.5
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.3e-12 75.1 85 43.5
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 3.3e-12 75.1 99 44.4
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 4.3e-12 74.7 92 39.1
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.3e-12 74.7 82 47.6
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 4.3e-12 74.7 80 46.2
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.7e-12 74.3 91 41.8
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 5.7e-12 74.3 91 41.8
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 5.7e-12 74.3 104 42.3
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 5.7e-12 74.3 89 41.6
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.7e-12 74.3 98 38.8
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.7e-12 74.3 81 43.2
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.4e-12 73.9 94 39.4
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 7.4e-12 73.9 96 41.7
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 7.4e-12 73.9 94 42.6
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 9.7e-12 73.6 88 46.6
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.7e-12 73.6 89 41.6
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 9.7e-12 73.6 95 42.1
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 9.7e-12 73.6 82 47.6
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.3e-11 73.2 98 37.8
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-11 73.2 93 43.0
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-11 73.2 93 43.0
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.6e-11 72.8 50 62.0
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.6e-11 72.8 50 62.0
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.6e-11 72.8 97 45.4
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-11 72.8 80 46.2
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.6e-11 72.8 91 42.9
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.6e-11 72.8 85 44.7
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.2e-11 72.4 57 50.9
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.8e-11 72.0 53 56.6
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 2.8e-11 72.0 95 43.2
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 2.8e-11 72.0 96 43.8
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 2.8e-11 72.0 93 45.2
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-11 72.0 79 43.0
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.8e-11 72.0 79 43.0
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.7e-11 71.6 87 42.5
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-11 71.6 90 41.1
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.7e-11 71.6 51 58.8
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.7e-11 71.6 94 39.4
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-11 70.9 83 43.4
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-11 70.9 134 36.6
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.3e-11 70.9 95 38.9
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 6.3e-11 70.9 95 38.9
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 6.3e-11 70.9 49 55.1
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.1e-10 70.1 84 41.7
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 1.4e-10 69.7 95 38.9
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-10 69.7 79 44.3
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.4e-10 69.7 95 38.9
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.8e-10 69.3 98 35.7
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-10 69.3 51 58.8
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 1.8e-10 69.3 51 58.8
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.4e-10 68.9 72 45.8
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-10 68.9 51 56.9
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 2.4e-10 68.9 87 43.7
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 3.1e-10 68.6 49 55.1
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 4.1e-10 68.2 94 38.3
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 5.3e-10 67.8 92 42.4
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 5.3e-10 67.8 92 35.9
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 5.3e-10 67.8 54 51.9
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 6.9e-10 67.4 90 43.3
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.2e-09 66.6 86 39.5
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.5e-09 66.2 49 57.1
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 3.4e-09 65.1 91 40.7
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 5.9e-09 64.3 88 40.9
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.9e-09 64.3 91 34.1
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 7.6e-09 63.9 86 39.5
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.0e-08 63.5 58 43.1
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.0e-08 63.5 91 41.8
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.0e-08 63.5 91 34.1
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.0e-08 63.5 40 55.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.0e-08 63.5 86 39.5
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 1.0e-08 63.5 93 36.6
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 1.3e-08 63.2 66 40.9
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.3e-08 63.2 77 42.9
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-08 62.8 50 60.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-08 62.8 91 38.5
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.7e-08 62.8 87 37.9
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.2e-08 62.4 91 38.5
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 2.9e-08 62.0 78 33.3
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 3.8e-08 61.6 51 43.1
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 5.0e-08 61.2 93 34.4
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 5.0e-08 61.2 54 42.6
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.5e-08 60.8 80 37.5
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 8.5e-08 60.5 79 35.4
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.1e-07 60.1 49 46.9
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.1e-07 60.1 87 40.2
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.1e-07 60.1 96 38.5
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-07 59.7 43 53.5
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.4e-07 59.7 93 36.6
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.4e-07 59.7 90 33.3
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.1e-06 55.8 42 57.1
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-06 55.5 95 37.9
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 4.6e-06 54.7 78 39.7
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 6.1e-06 54.3 62 45.2


User provided reference genes

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