Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 1.1e-93 346.7 182 100.0
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 6.8e-59 231.1 188 68.1
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 2.0e-55 219.5 190 66.3
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 7.5e-50 201.1 178 62.9
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 7.5e-50 201.1 144 77.1
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.2e-49 199.5 148 77.7
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 2.2e-49 199.5 148 77.7
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 3.7e-49 198.7 149 77.9
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 4.9e-49 198.4 178 62.4
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 6.4e-49 198.0 145 75.2
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 3.2e-48 195.7 148 75.7
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 3.2e-48 195.7 151 76.2
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 3.2e-48 195.7 150 74.7
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 4.1e-48 195.3 147 76.2
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 9.2e-48 194.1 146 72.6
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 9.2e-48 194.1 150 74.7
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.6e-47 193.4 146 75.3
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 1.6e-47 193.4 149 74.5
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 4.6e-47 191.8 149 74.5
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 6.0e-47 191.4 151 72.8
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 6.0e-47 191.4 144 74.3
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 6.0e-47 191.4 144 74.3
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.0e-46 190.7 152 72.4
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 1.3e-46 190.3 151 73.5
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 1.7e-46 189.9 151 73.5
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 2.3e-46 189.5 149 73.8
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 6.6e-46 188.0 150 74.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 6.6e-46 188.0 177 62.7
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 8.6e-46 187.6 151 74.2
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.1e-45 187.2 151 71.5
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.1e-45 187.2 151 71.5
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 1.9e-45 186.4 149 71.8
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.5e-45 186.0 151 72.8
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 3.3e-45 185.7 147 70.7
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 7.3e-45 184.5 148 72.3
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 4.7e-44 181.8 151 66.9
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 8.1e-44 181.0 145 70.3
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 1.1e-43 180.6 144 69.4
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.4e-43 180.3 148 70.3
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.4e-43 180.3 158 68.4
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 2.3e-43 179.5 150 68.7
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 3.1e-43 179.1 147 68.7
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 4.0e-43 178.7 171 60.2
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 4.0e-43 178.7 144 68.8
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 6.8e-43 177.9 145 70.3
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 8.9e-43 177.6 149 70.5
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 1.2e-42 177.2 148 69.6
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.5e-42 176.8 148 68.9
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 3.4e-42 175.6 146 68.5
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 4.4e-42 175.3 144 68.8
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 5.8e-42 174.9 144 69.4
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 7.5e-42 174.5 149 68.5
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 9.8e-42 174.1 147 69.4
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.3e-41 173.7 146 67.8
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 1.3e-41 173.7 144 68.8
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 1.3e-41 173.7 147 68.7
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 1.7e-41 173.3 144 67.4
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 2.2e-41 172.9 148 68.9
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.7e-41 172.2 149 67.8
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.4e-41 171.4 149 67.8
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 6.4e-41 171.4 147 68.0
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 8.3e-41 171.0 151 69.5
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 8.3e-41 171.0 151 69.5
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 1.1e-40 170.6 147 65.3
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 2.4e-40 169.5 145 66.9
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 7.1e-40 167.9 153 65.4
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 9.2e-40 167.5 148 66.9
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.2e-39 167.2 148 67.6
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 2.1e-39 166.4 148 63.5
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 2.1e-39 166.4 148 63.5
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 4.6e-39 165.2 144 64.6
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 6.0e-39 164.9 148 62.8
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 7.8e-39 164.5 147 63.3
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 7.8e-39 164.5 147 63.3
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 7.8e-39 164.5 145 69.0
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 7.8e-39 164.5 144 65.3
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-38 164.1 147 63.3
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 1.0e-38 164.1 147 63.3
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 1.7e-38 163.3 146 63.7
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.7e-38 163.3 148 67.6
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.3e-38 162.9 142 64.8
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 2.3e-38 162.9 147 66.0
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 3.9e-38 162.2 151 70.2
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 3.9e-38 162.2 143 67.8
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 3.9e-38 162.2 145 66.9
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 5.1e-38 161.8 153 62.7
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 5.1e-38 161.8 151 69.5
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 5.1e-38 161.8 147 65.3
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 5.1e-38 161.8 150 65.3
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 1.5e-37 160.2 150 65.3
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 1.9e-37 159.8 151 62.3
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 1.9e-37 159.8 149 64.4
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 1.9e-37 159.8 147 63.3
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 3.3e-37 159.1 147 63.9
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.3e-37 158.7 147 65.3
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 5.6e-37 158.3 147 64.6
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 7.3e-37 157.9 147 61.2
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 1.6e-36 156.8 145 64.1
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 2.8e-36 156.0 147 63.3
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 2.8e-36 156.0 147 63.3
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 2.8e-36 156.0 147 65.3
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 3.6e-36 155.6 147 64.6
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 4.7e-36 155.2 147 63.3
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 8.1e-36 154.5 144 60.4
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 2.3e-35 152.9 123 70.7
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 2.3e-35 152.9 152 61.8
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 8.9e-35 151.0 145 65.5
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 8.9e-35 151.0 145 65.5
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 8.9e-35 151.0 145 65.5
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 1.2e-34 150.6 156 60.3
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 2.0e-34 149.8 149 59.7
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 2.6e-34 149.4 146 63.7
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 5.8e-34 148.3 152 61.2
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.3e-33 147.1 142 64.8
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 3.8e-33 145.6 145 63.4
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 1.4e-32 143.7 133 62.4
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 7.1e-32 141.4 144 59.7
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 6.6e-30 134.8 129 64.3
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 1.1e-29 134.0 101 72.3
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 4.0e-27 125.6 170 52.4
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 4.0e-27 125.6 170 52.4
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 4.4e-26 122.1 99 70.7
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 7.6e-26 121.3 144 56.2
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 9.9e-26 120.9 139 52.5
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.9e-24 116.7 130 55.4
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 2.5e-21 106.3 173 48.0
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.3e-20 104.0 103 65.0
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 2.1e-20 103.2 116 53.4
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 2.8e-20 102.8 80 68.8
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-19 100.9 84 63.1
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.9e-17 92.8 108 57.4
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 1.4e-16 90.5 58 74.1
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 4.6e-15 85.5 96 50.0
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 4.6e-15 85.5 100 59.0
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-14 84.3 47 80.9
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 1.8e-14 83.6 80 57.5
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 5.1e-14 82.0 47 78.7
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 5.1e-14 82.0 44 84.1
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 1.5e-13 80.5 49 77.6
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 1.6e-12 77.0 115 43.5
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 2.1e-12 76.6 100 55.0
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 2.8e-12 76.3 108 53.7
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.7e-09 67.0 113 39.8
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 4.9e-09 65.5 70 48.6
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 5.5e-08 62.0 60 53.3


User provided reference genes

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