Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.7e-57 225.7 111 100.0
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.8e-55 218.4 109 98.2
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.8e-47 191.8 109 82.6
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 2.8e-47 191.8 109 82.6
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.4e-46 189.5 109 82.6
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.4e-46 189.5 109 81.7
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.4e-46 189.5 109 81.7
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 1.8e-46 189.1 109 82.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 2.4e-46 188.7 109 80.7
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 3.1e-46 188.3 111 77.5
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 3.1e-46 188.3 109 80.7
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 3.1e-46 188.3 109 81.7
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 4.0e-46 188.0 109 81.7
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 5.2e-46 187.6 108 82.4
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 5.2e-46 187.6 109 80.7
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.9e-46 187.2 109 80.7
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.9e-46 187.2 109 79.8
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 6.9e-46 187.2 108 80.6
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 9.0e-46 186.8 109 78.9
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 9.0e-46 186.8 109 79.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.2e-45 186.4 109 79.8
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-45 186.0 108 81.5
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.5e-45 186.0 108 81.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.5e-45 186.0 109 80.7
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.5e-45 186.0 109 80.7
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.0e-45 185.7 109 80.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.6e-45 185.3 108 80.6
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 2.6e-45 185.3 109 78.0
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.4e-45 184.9 108 79.6
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 3.4e-45 184.9 109 79.8
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-45 184.9 109 81.7
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.4e-45 184.9 109 81.7
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 3.4e-45 184.9 109 80.7
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 3.4e-45 184.9 109 78.0
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 4.4e-45 184.5 109 79.8
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.4e-45 184.5 111 77.5
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 5.8e-45 184.1 108 80.6
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 7.6e-45 183.7 109 78.9
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 7.6e-45 183.7 109 79.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 9.9e-45 183.3 109 80.7
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-44 183.0 109 81.7
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-44 183.0 109 81.7
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-44 183.0 109 81.7
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-44 183.0 109 81.7
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-44 183.0 108 80.6
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.7e-44 182.6 109 78.9
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.7e-44 182.6 108 78.7
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 2.2e-44 182.2 108 79.6
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.2e-44 182.2 109 79.8
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 2.2e-44 182.2 109 79.8
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 2.9e-44 181.8 109 77.1
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.9e-44 181.8 105 82.9
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 3.8e-44 181.4 108 77.8
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.8e-44 181.4 109 78.0
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.8e-44 181.4 108 79.6
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 4.9e-44 181.0 109 79.8
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 6.4e-44 180.6 108 77.8
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 6.4e-44 180.6 109 78.0
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 8.4e-44 180.3 109 78.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 1.4e-43 179.5 109 76.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.9e-43 179.1 109 78.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 1.9e-43 179.1 109 78.0
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 2.4e-43 178.7 108 76.9
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 3.2e-43 178.3 108 75.9
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 3.2e-43 178.3 109 76.1
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 3.2e-43 178.3 109 78.0
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.2e-43 177.9 109 76.1
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 4.2e-43 177.9 109 76.1
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 5.4e-43 177.6 110 77.3
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 5.4e-43 177.6 109 77.1
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 7.1e-43 177.2 109 76.1
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.2e-42 176.4 109 77.1
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-42 176.4 109 75.2
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.6e-42 176.0 109 77.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.1e-42 175.6 108 74.1
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 2.1e-42 175.6 109 76.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 2.7e-42 175.3 108 76.9
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.5e-42 174.9 108 74.1
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 4.6e-42 174.5 109 70.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 4.6e-42 174.5 109 75.2
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.0e-42 174.1 109 75.2
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.0e-41 173.3 109 74.3
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.3e-41 172.9 109 73.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.3e-41 172.9 109 77.1
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.3e-41 172.9 109 77.1
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 2.3e-41 172.2 109 74.3
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.3e-41 172.2 108 71.3
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.3e-41 172.2 108 71.3
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.3e-41 172.2 108 72.2
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.1e-41 171.0 109 74.3
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.1e-40 169.9 109 72.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.1e-40 169.9 109 74.3
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.5e-40 168.7 109 70.6
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.3e-40 168.3 109 69.7
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 5.6e-40 167.5 111 66.7
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.6e-39 166.0 109 73.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.6e-39 166.0 109 70.6
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.8e-39 165.2 109 67.0
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.8e-39 165.2 109 73.4
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 2.8e-39 165.2 109 67.9
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.8e-38 162.5 109 66.1
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 2.4e-38 162.2 108 71.3
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 3.1e-38 161.8 109 66.1
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 5.3e-38 161.0 105 69.5
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 1.2e-37 159.8 101 76.2
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-37 159.8 101 76.2
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.2e-37 159.8 101 75.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 2.0e-37 159.1 101 75.2
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 2.0e-37 159.1 101 75.2
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 2.0e-37 159.1 101 75.2
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.6e-37 158.7 101 75.2
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.4e-37 158.3 101 75.2
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 3.4e-37 158.3 101 73.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 4.5e-37 157.9 101 76.2
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-36 156.4 101 74.3
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.3e-36 156.4 101 74.3
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.7e-36 156.0 101 73.3
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.7e-36 156.0 109 61.5
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 4.9e-36 154.5 92 75.0
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.2e-35 151.8 106 65.1
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 5.4e-35 151.0 101 68.3
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.2e-34 149.8 106 68.9
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.0e-33 146.7 98 72.4
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 4.3e-32 141.4 95 66.3
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 7.6e-29 130.6 117 59.0
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.9e-24 115.9 66 81.8
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.1e-23 112.5 68 79.4
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.2e-21 106.7 85 62.4
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.4e-21 105.1 103 43.7
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.0e-20 103.6 113 41.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 8.4e-20 100.5 115 42.6
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 9.3e-19 97.1 73 67.1
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 3.0e-17 92.0 65 69.2
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 8.8e-09 63.9 84 35.7
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.5e-08 63.2 34 91.2


User provided reference genes

Program Settings