Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.5e-303 1045.4 534 100.0
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 5.8e-183 644.8 548 63.1
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 2.1e-172 609.8 541 61.9
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 6.0e-172 608.2 536 60.1
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.0e-171 607.4 512 63.3
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 8.7e-171 604.4 537 60.1
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 8.7e-171 604.4 537 60.1
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.2e-169 600.5 512 61.1
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.8e-169 599.4 548 60.2
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 6.2e-169 598.2 532 59.8
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.4e-168 597.0 537 59.4
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 6.9e-168 594.7 537 58.7
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 1.2e-167 594.0 527 61.7
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.5e-167 593.6 528 61.7
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.0e-167 593.2 537 59.0
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.8e-167 591.7 539 60.5
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 7.6e-167 591.3 535 60.2
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 7.6e-167 591.3 541 60.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 7.6e-167 591.3 535 60.7
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.2e-166 589.7 535 59.6
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 4.2e-165 585.5 539 59.2
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 5.4e-165 585.1 541 58.6
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 5.4e-165 585.1 553 59.3
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 6.0e-164 581.6 537 58.8
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 9.6e-162 574.3 537 58.7
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.6e-161 573.5 511 59.5
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 2.1e-161 573.2 549 57.6
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 8.1e-161 571.2 539 56.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 8.1e-161 571.2 502 60.6
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.4e-160 570.5 504 60.3
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 2.4e-160 569.7 531 57.8
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.3e-160 568.5 545 57.6
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 6.9e-160 568.2 524 58.2
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 2.0e-159 566.6 529 57.7
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 2.0e-159 566.6 549 56.6
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 3.4e-159 565.8 536 58.6
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 4.5e-159 565.5 518 59.1
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 4.5e-159 565.5 542 55.7
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.6e-159 564.7 509 59.5
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 7.6e-159 564.7 538 58.0
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 2.9e-158 562.8 517 58.2
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 3.8e-158 562.4 533 57.4
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 1.9e-157 560.1 553 55.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 3.2e-157 559.3 533 58.3
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 4.2e-157 558.9 523 57.4
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 5.4e-157 558.5 540 57.0
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 7.1e-157 558.1 516 57.2
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 2.7e-156 556.2 523 57.9
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.7e-156 556.2 547 56.7
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 4.6e-156 555.4 515 60.2
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 1.3e-155 553.9 523 57.2
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.8e-155 553.5 517 57.4
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.3e-155 553.1 523 56.4
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.0e-155 552.7 534 55.8
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 3.9e-155 552.4 539 55.7
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 5.1e-155 552.0 513 58.3
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 5.1e-155 552.0 537 56.8
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.7e-155 551.2 560 55.9
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.1e-154 550.8 547 55.8
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.5e-154 550.4 534 56.0
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 1.5e-154 550.4 534 56.2
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 3.3e-154 549.3 544 55.5
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 1.6e-153 547.0 543 55.2
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 6.2e-153 545.0 544 55.0
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 2.4e-152 543.1 534 56.0
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 3.1e-152 542.7 513 56.7
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 4.0e-152 542.3 544 54.2
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.2e-151 540.8 540 55.2
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.2e-151 540.8 539 54.9
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.5e-151 540.4 515 56.1
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.5e-151 540.4 515 56.1
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 5.8e-151 538.5 514 56.4
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 5.8e-151 538.5 514 56.4
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 5.8e-151 538.5 500 58.0
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.2e-150 536.6 569 53.8
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 3.8e-150 535.8 510 55.9
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 6.4e-150 535.0 521 56.0
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.4e-150 535.0 523 56.0
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 8.4e-150 534.6 515 55.9
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.4e-149 533.9 524 55.2
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 4.2e-149 532.3 541 55.1
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 4.2e-149 532.3 540 53.9
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 5.5e-149 531.9 532 54.3
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 6.2e-145 518.5 505 57.4
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 8.2e-145 518.1 518 56.2
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 1.2e-143 514.2 557 50.8
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-141 507.3 462 58.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 2.7e-140 503.1 513 54.6
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 2.2e-137 493.4 536 53.7
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.4e-133 480.7 395 64.3
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 7.9e-132 474.9 553 49.7
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.9e-131 472.6 465 54.2
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 6.7e-131 471.9 466 54.5
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 4.1e-128 462.6 435 57.0
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.7e-126 457.2 604 47.4
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.7e-126 457.2 426 56.8
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.1e-125 454.5 541 49.5
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.5e-125 453.4 523 49.9
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.7e-124 449.9 549 49.5
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 2.7e-124 449.9 512 50.0
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 8.2e-121 438.3 531 49.0
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 3.7e-113 412.9 335 62.7
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.3e-110 404.4 493 46.2
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 4.7e-108 396.0 500 45.6
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 8.9e-91 338.6 306 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 3.5e-79 300.1 317 50.5
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.6e-79 299.7 269 60.2
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 7.3e-77 292.4 277 58.5
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 4.0e-75 286.6 316 49.4
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.3e-73 281.6 284 55.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 3.7e-73 280.0 244 59.0
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.4e-73 279.3 305 52.8
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 6.4e-73 279.3 305 52.8
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 3.0e-70 270.4 367 41.1
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 5.1e-70 269.6 216 64.4
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.8e-67 261.2 240 59.2
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 3.1e-67 260.4 241 58.9
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.4e-66 256.9 219 59.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 8.3e-65 252.3 257 54.1
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 1.9e-64 251.1 230 58.3
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 6.6e-62 242.7 233 54.9
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 3.3e-61 240.4 173 69.9
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 7.6e-58 229.2 176 64.2
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 2.7e-55 220.7 180 65.6
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 4.3e-53 213.4 224 54.5
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 2.0e-50 204.5 163 61.3
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.1e-36 157.9 202 45.0
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.6e-34 151.0 171 49.1
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.7e-33 148.3 164 51.2
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.8e-28 130.2 240 36.7
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 6.2e-28 129.8 528 28.4
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 5.8e-26 123.2 570 24.4
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 8.4e-25 119.4 150 46.7
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.9e-24 118.2 143 47.6
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.4e-19 101.3 55 85.5
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 3.1e-19 100.9 275 32.0
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-18 99.0 106 46.2
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 6.5e-17 93.2 63 71.4
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 1.1e-11 75.9 332 28.3
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.2e-10 72.4 69 63.8
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.2e-09 68.2 67 43.3
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 9.4e-08 62.8 66 50.0


User provided reference genes

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