Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 3.0e-134 481.9 247 100.0
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 6.7e-110 401.0 247 87.4
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 5.4e-83 311.6 243 67.1
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 1.6e-82 310.1 252 66.3
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 2.0e-82 309.7 251 67.7
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 1.3e-81 307.0 194 78.9
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 5.0e-81 305.1 254 66.9
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 1.1e-80 303.9 248 65.3
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.5e-80 303.5 256 65.2
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.9e-80 303.1 247 66.8
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 4.2e-80 302.0 195 77.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 1.2e-79 300.4 196 78.6
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 3.6e-79 298.9 195 74.9
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 5.2e-78 295.0 242 67.4
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 6.8e-78 294.7 230 69.6
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 2.0e-77 293.1 196 74.5
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 3.4e-77 292.4 182 80.2
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 9.8e-77 290.8 198 76.3
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 3.7e-76 288.9 238 66.4
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 4.9e-76 288.5 193 77.7
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 6.3e-76 288.1 192 76.6
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 8.3e-76 287.7 215 70.7
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 1.8e-75 286.6 271 60.5
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 2.4e-75 286.2 244 66.0
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 3.2e-75 285.8 284 57.0
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 4.1e-75 285.4 190 75.8
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.2e-74 283.9 244 63.5
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 5.9e-74 281.6 197 71.6
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 1.0e-73 280.8 239 64.9
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 1.3e-73 280.4 250 63.6
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 2.9e-73 279.3 189 74.6
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 3.9e-73 278.9 248 62.1
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 1.1e-72 277.3 220 68.2
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 4.3e-72 275.4 159 85.5
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 4.3e-72 275.4 165 81.8
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 2.8e-71 272.7 196 73.0
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 2.8e-71 272.7 197 70.1
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 8.0e-71 271.2 206 70.4
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.8e-70 270.0 238 62.6
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 1.8e-70 270.0 199 69.8
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 3.1e-70 269.2 187 74.3
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 6.8e-70 268.1 229 63.3
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 8.9e-70 267.7 196 71.9
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 8.9e-70 267.7 195 69.2
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 2.0e-69 266.5 191 69.6
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 3.4e-69 265.8 238 60.9
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 3.4e-69 265.8 190 69.5
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 4.4e-69 265.4 223 64.6
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 7.5e-69 264.6 244 60.7
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 1.7e-68 263.5 249 57.4
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 2.2e-68 263.1 247 58.3
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 2.9e-68 262.7 193 70.5
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.9e-68 262.7 231 60.6
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 6.4e-68 261.5 238 60.9
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 8.3e-68 261.2 247 58.3
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 8.3e-68 261.2 194 68.0
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.1e-67 260.8 194 68.0
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.1e-67 260.8 235 60.4
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 1.9e-67 260.0 237 59.5
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.9e-67 260.0 205 65.9
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 2.4e-67 259.6 247 60.3
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 3.2e-67 259.2 194 66.5
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 3.2e-67 259.2 247 57.1
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 3.2e-67 259.2 247 57.1
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 3.2e-67 259.2 190 68.9
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 4.1e-67 258.8 233 60.9
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 4.1e-67 258.8 233 60.9
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 5.4e-67 258.5 230 60.4
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.4e-67 258.5 204 68.1
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 5.4e-67 258.5 256 57.4
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 5.4e-67 258.5 201 67.2
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 7.0e-67 258.1 192 69.3
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 1.2e-66 257.3 161 79.5
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 1.6e-66 256.9 198 66.7
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 2.0e-66 256.5 194 67.0
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 4.6e-66 255.4 194 68.0
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 4.6e-66 255.4 200 66.0
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 4.6e-66 255.4 191 68.6
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.7e-65 253.4 192 66.7
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 2.3e-65 253.1 186 69.4
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 3.0e-65 252.7 194 67.0
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 5.0e-65 251.9 195 67.2
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.9e-64 250.0 198 68.2
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 2.5e-64 249.6 162 75.9
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.6e-63 246.9 232 59.1
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 3.6e-63 245.7 170 72.9
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 3.6e-63 245.7 195 65.6
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 1.8e-62 243.4 203 65.0
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 6.8e-62 241.5 199 62.8
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 6.8e-62 241.5 193 62.7
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 8.9e-62 241.1 166 71.1
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 2.2e-60 236.5 155 74.2
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.4e-59 233.8 205 62.4
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.2e-58 230.7 157 72.6
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 6.0e-58 228.4 158 72.2
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 1.1e-56 224.2 184 64.7
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 5.6e-56 221.9 183 62.8
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 6.2e-55 218.4 247 51.8
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 3.1e-54 216.1 140 75.0
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.7e-52 210.3 233 56.2
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.9e-52 209.5 162 65.4
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.5e-48 197.2 185 57.8
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.6e-47 192.6 157 61.1
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 3.6e-47 192.6 157 61.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.7e-44 183.7 198 53.5
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 3.8e-44 182.6 195 53.8
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.6e-42 177.2 198 52.0
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 1.7e-41 173.7 215 44.7
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 3.9e-41 172.6 182 50.5
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 1.3e-33 147.5 158 48.1
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 3.9e-33 146.0 93 75.3
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.3e-32 142.9 82 84.1
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 1.3e-31 141.0 154 48.1
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 1.6e-31 140.6 154 46.1
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 1.8e-30 137.1 82 80.5
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 1.7e-28 130.6 88 71.6
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 5.5e-27 125.6 106 60.4
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 9.3e-27 124.8 105 66.7
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 1.2e-26 124.4 188 38.3
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 2.7e-26 123.2 163 46.6
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 3.0e-25 119.8 160 45.6
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 3.3e-24 116.3 164 45.7
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 1.6e-23 114.0 152 45.4
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 4.5e-21 105.9 69 71.0
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-18 97.8 94 54.3
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 4.3e-16 89.4 156 35.9
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 5.3e-14 82.4 118 42.4
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 3.2e-11 73.2 65 63.1
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 7.2e-11 72.0 100 42.0
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.0e-09 66.6 110 41.8
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.3e-08 63.2 113 39.8
Eucgr.H05133 Eucalyptus grandis HOM05D006319 ORTHO05D193808 4.1e-06 56.2 34 79.4
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 6.9e-06 55.5 143 27.3


User provided reference genes

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