Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 1.4e-53 212.6 105 100.0
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 5.2e-27 124.4 105 61.9
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 2.1e-20 102.4 105 52.4
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 1.8e-19 99.4 105 54.3
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.8e-19 99.4 105 53.3
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 3.0e-19 98.6 106 52.8
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 4.0e-19 98.2 105 52.4
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 5.2e-19 97.8 106 52.8
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 5.2e-19 97.8 105 53.3
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 6.8e-19 97.4 106 50.0
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 8.8e-19 97.1 105 53.3
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 8.8e-19 97.1 105 52.4
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 2.6e-18 95.5 105 50.5
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 5.7e-18 94.4 107 54.2
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 7.5e-18 94.0 106 52.8
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 7.5e-18 94.0 106 52.8
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 9.8e-18 93.6 105 50.5
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.7e-17 92.8 69 65.2
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 1.7e-17 92.8 66 69.7
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 4.8e-17 91.3 105 51.4
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 6.3e-17 90.9 105 45.7
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 6.3e-17 90.9 118 44.9
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.4e-16 89.7 105 49.5
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 1.4e-16 89.7 95 53.7
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 2.4e-16 89.0 110 47.3
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 2.4e-16 89.0 106 46.2
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 3.1e-16 88.6 112 46.4
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 3.1e-16 88.6 106 50.9
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 5.4e-16 87.8 74 63.5
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 5.4e-16 87.8 105 48.6
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 9.1e-16 87.0 64 62.5
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 9.1e-16 87.0 107 47.7
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 9.1e-16 87.0 107 49.5
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.2e-15 86.7 111 45.0
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 2.0e-15 85.9 58 67.2
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 2.7e-15 85.5 108 48.1
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 2.7e-15 85.5 106 49.1
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 4.5e-15 84.7 105 45.7
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 4.5e-15 84.7 106 48.1
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 4.5e-15 84.7 103 48.5
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 4.5e-15 84.7 105 47.6
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 7.7e-15 84.0 105 46.7
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 7.7e-15 84.0 106 48.1
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 7.7e-15 84.0 100 52.0
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 7.7e-15 84.0 106 49.1
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 7.7e-15 84.0 71 56.3
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.0e-14 83.6 107 42.1
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.0e-14 83.6 107 42.1
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 1.0e-14 83.6 103 47.6
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 1.3e-14 83.2 105 47.6
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 1.3e-14 83.2 114 42.1
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 3.8e-14 81.6 106 46.2
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 3.8e-14 81.6 71 53.5
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 3.8e-14 81.6 71 53.5
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 6.5e-14 80.9 58 65.5
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 8.5e-14 80.5 106 46.2
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 8.5e-14 80.5 106 46.2
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 8.5e-14 80.5 68 57.4
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 1.1e-13 80.1 53 71.7
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 1.1e-13 80.1 53 71.7
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 1.1e-13 80.1 112 45.5
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 1.1e-13 80.1 105 46.7
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 1.5e-13 79.7 105 41.9
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 1.5e-13 79.7 106 45.3
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 2.5e-13 79.0 53 69.8
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 2.5e-13 79.0 53 69.8
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 3.2e-13 78.6 52 69.2
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 4.2e-13 78.2 59 61.0
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 1.2e-12 76.6 109 43.1
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 2.7e-12 75.5 43 79.1
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 3.6e-12 75.1 101 42.6
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 3.6e-12 75.1 48 70.8
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 4.7e-12 74.7 63 54.0
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 4.7e-12 74.7 46 71.7
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 4.7e-12 74.7 46 71.7
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 6.1e-12 74.3 66 57.6
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 4.0e-11 71.6 105 41.9
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 1.5e-10 69.7 46 71.7
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 3.4e-10 68.6 44 68.2
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 7.5e-10 67.4 49 63.3
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 1.3e-09 66.6 74 44.6
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 1.3e-09 66.6 74 44.6
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.7e-09 66.2 49 63.3
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 2.2e-09 65.9 49 61.2
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 4.9e-09 64.7 49 61.2
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 1.1e-08 63.5 49 57.1
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 1.8e-08 62.8 106 36.8
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 1.8e-08 62.8 43 67.4
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 5.4e-08 61.2 52 53.8
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 1.2e-07 60.1 48 58.3
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 3.5e-07 58.5 48 54.2
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 4.5e-07 58.2 49 55.1
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 7.7e-07 57.4 48 56.2


User provided reference genes

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