Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 9.6e-89 330.1 163 100.0
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.5e-41 173.3 162 60.5
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.7e-40 169.9 162 56.8
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 2.8e-40 169.1 162 56.2
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.8e-40 169.1 162 56.8
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.7e-40 168.7 161 58.4
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 4.8e-40 168.3 162 56.8
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 8.3e-40 167.5 162 58.6
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.1e-39 167.2 153 56.9
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 1.8e-39 166.4 162 56.2
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 1.8e-39 166.4 163 56.4
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 3.1e-39 165.6 162 54.9
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 5.3e-39 164.9 161 55.9
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 7.0e-39 164.5 162 56.8
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 9.1e-39 164.1 163 55.8
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 9.1e-39 164.1 163 55.8
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.6e-38 163.3 162 53.7
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.6e-38 163.3 160 54.4
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 2.0e-38 162.9 162 53.7
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 3.5e-38 162.2 161 55.9
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 4.5e-38 161.8 119 65.5
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 5.9e-38 161.4 161 55.3
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.9e-36 156.4 137 60.6
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 2.5e-36 156.0 162 54.9
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 9.4e-36 154.1 130 59.2
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 1.2e-35 153.7 138 58.7
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.6e-35 152.1 151 55.6
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 3.6e-35 152.1 163 52.1
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 3.6e-35 152.1 140 58.6
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 4.7e-35 151.8 139 56.8
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 8.0e-35 151.0 165 48.5
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 8.0e-35 151.0 165 48.5
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 8.0e-35 151.0 140 57.9
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 8.0e-35 151.0 110 67.3
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 1.8e-34 149.8 152 58.6
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 1.8e-34 149.8 136 58.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 6.8e-34 147.9 165 48.5
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 8.8e-34 147.5 147 51.0
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 2.0e-33 146.4 136 60.3
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 2.6e-33 146.0 154 53.2
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 5.7e-33 144.8 152 51.3
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 5.7e-33 144.8 163 52.1
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 7.5e-33 144.4 134 56.0
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 9.8e-33 144.1 159 52.2
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 9.8e-33 144.1 161 55.9
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 1.7e-32 143.3 109 64.2
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 1.7e-32 143.3 145 50.3
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 3.7e-32 142.1 162 50.6
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 4.8e-32 141.7 151 52.3
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 6.3e-32 141.4 136 55.1
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.1e-31 140.6 129 55.0
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.1e-31 140.6 143 51.7
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 1.1e-31 140.6 143 51.7
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.4e-31 139.4 164 48.2
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 3.1e-31 139.0 142 53.5
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 5.4e-31 138.3 150 50.0
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 1.2e-30 137.1 155 49.0
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.7e-30 136.0 156 49.4
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 2.7e-30 136.0 143 53.8
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 4.5e-30 135.2 159 50.3
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 5.9e-30 134.8 163 51.5
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 5.9e-30 134.8 112 58.0
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 1.3e-29 133.7 159 47.8
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.9e-29 132.5 154 51.9
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 5.0e-29 131.7 114 59.6
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 1.1e-28 130.6 147 51.0
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 1.5e-28 130.2 119 62.2
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 1.9e-28 129.8 113 58.4
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 4.2e-28 128.6 136 50.0
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 4.2e-28 128.6 144 50.0
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 5.5e-28 128.3 147 49.7
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.2e-27 127.1 132 53.0
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 2.1e-27 126.3 112 56.2
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 8.0e-27 124.4 151 45.0
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.0e-26 124.0 152 50.0
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 1.8e-26 123.2 114 57.0
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 5.2e-26 121.7 154 46.1
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 6.8e-26 121.3 154 46.1
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 8.9e-26 120.9 142 51.4
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 8.9e-26 120.9 77 67.5
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.2e-25 120.6 136 47.8
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.5e-25 120.2 155 45.8
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 5.7e-25 118.2 120 58.3
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 9.8e-25 117.5 166 43.4
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 9.8e-25 117.5 129 53.5
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 1.3e-24 117.1 74 68.9
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.7e-24 116.7 136 47.1
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.7e-24 116.7 136 47.1
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 2.2e-24 116.3 133 45.9
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 2.2e-24 116.3 133 45.1
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 2.2e-24 116.3 167 43.1
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 2.8e-24 115.9 133 45.1
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 3.7e-24 115.5 164 42.7
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 3.7e-24 115.5 153 44.4
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 4.9e-24 115.2 145 46.2
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 6.3e-24 114.8 137 47.4
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.1e-23 114.0 77 64.9
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 1.1e-23 114.0 164 44.5
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 1.4e-23 113.6 143 49.0
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 5.4e-23 111.7 139 47.5
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 2.7e-22 109.4 151 43.7
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 5.9e-22 108.2 151 43.0
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 7.8e-22 107.8 174 42.0
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 1.3e-21 107.1 106 55.7
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 2.3e-21 106.3 139 44.6
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 2.9e-21 105.9 121 51.2
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 6.6e-21 104.8 136 45.6
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 6.6e-21 104.8 70 65.7
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 8.6e-21 104.4 108 50.9
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 1.9e-20 103.2 139 43.2
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.2e-19 100.5 142 43.7
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 6.1e-19 98.2 120 44.2
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 8.0e-19 97.8 127 46.5
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 4.0e-18 95.5 130 45.4
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.5e-17 93.6 166 38.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 4.4e-17 92.0 99 49.5
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 9.8e-17 90.9 144 41.0
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 2.9e-16 89.4 136 41.2
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 3.7e-16 89.0 115 46.1
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 3.7e-16 89.0 113 45.1
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.9e-16 88.6 100 47.0
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 3.2e-15 85.9 126 42.1
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 3.2e-15 85.9 127 44.1
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 7.0e-15 84.7 127 43.3
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 2.0e-14 83.2 127 42.5
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 2.0e-14 83.2 127 42.5
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 2.0e-14 83.2 127 42.5
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 7.8e-14 81.3 153 39.2
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.0e-13 80.9 138 42.0
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 2.3e-13 79.7 121 43.0
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 3.0e-13 79.3 136 39.0
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.6e-13 78.2 52 71.2
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.1e-12 77.4 141 35.5
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.6e-11 73.6 115 37.4
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.6e-11 72.4 136 39.0
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 4.7e-11 72.0 53 56.6
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 1.4e-10 70.5 126 36.5
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 2.3e-10 69.7 154 35.7
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.7e-06 56.2 75 48.0
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 3.5e-06 55.8 45 60.0


User provided reference genes

Program Settings