Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 5.5e-122 441.0 230 100.0
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 6.9e-117 424.1 252 90.1
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 6.1e-73 278.1 234 63.2
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.4e-69 266.9 248 57.7
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.6e-68 263.5 248 56.5
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 4.5e-68 261.9 247 55.9
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 7.7e-68 261.2 249 57.0
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 2.3e-67 259.6 243 59.3
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.2e-65 253.8 241 57.3
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.1e-65 253.1 252 56.3
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.0e-64 250.8 246 53.3
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.0e-64 250.8 251 54.2
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.4e-64 250.4 243 56.0
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.4e-64 250.4 251 55.0
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.8e-64 250.0 247 55.5
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.8e-64 250.0 252 56.0
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 3.0e-64 249.2 244 56.1
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 3.0e-64 249.2 246 53.3
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 6.8e-64 248.1 243 56.4
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 2.0e-63 246.5 299 48.8
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.6e-63 246.1 249 53.8
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.4e-63 245.4 254 54.3
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 7.5e-63 244.6 256 53.9
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 9.8e-63 244.2 240 54.6
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 1.3e-62 243.8 246 51.2
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 1.7e-62 243.4 252 53.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.7e-62 243.4 254 52.4
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.4e-61 240.4 253 49.8
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 1.8e-61 240.0 252 50.0
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 9.2e-61 237.7 249 52.2
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 9.2e-61 237.7 252 50.0
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 4.5e-60 235.3 232 53.4
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.5e-60 235.3 250 51.6
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 5.9e-60 235.0 247 51.8
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.0e-59 234.2 242 52.9
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.3e-59 233.8 238 50.8
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.9e-59 232.3 231 55.0
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 3.9e-59 232.3 238 50.4
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 6.6e-59 231.5 238 53.8
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 8.6e-59 231.1 244 50.4
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 8.6e-59 231.1 256 53.5
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 1.5e-58 230.3 247 51.8
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 3.3e-58 229.2 237 51.1
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 5.6e-58 228.4 246 50.8
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.6e-57 226.9 240 51.2
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.1e-57 224.9 237 52.3
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 2.3e-56 223.0 243 49.4
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.1e-56 222.6 239 51.9
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 3.1e-56 222.6 244 50.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 1.2e-55 220.7 249 47.4
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.2e-55 220.7 240 49.6
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 7.5e-55 218.0 245 49.0
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.3e-54 217.2 238 51.3
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 1.3e-54 217.2 243 49.4
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 2.2e-54 216.5 245 47.8
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 3.7e-54 215.7 275 44.7
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 3.7e-54 215.7 275 44.7
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 3.7e-54 215.7 242 48.8
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 8.3e-54 214.5 250 48.8
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 8.3e-54 214.5 239 51.5
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.1e-53 214.2 264 47.0
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 1.9e-53 213.4 259 47.5
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.9e-53 213.4 240 50.0
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 4.1e-53 212.2 253 48.2
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 5.4e-53 211.8 235 50.2
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 9.2e-53 211.1 180 61.7
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 9.2e-53 211.1 175 63.4
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.2e-52 210.7 267 44.6
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 1.2e-52 210.7 228 52.6
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 1.2e-52 210.7 250 47.6
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.6e-52 210.3 234 48.3
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 4.6e-52 208.8 252 47.2
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 2.3e-51 206.5 249 47.0
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 3.0e-51 206.1 262 45.8
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 6.6e-51 204.9 261 44.4
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 6.6e-51 204.9 262 44.7
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 1.1e-50 204.1 240 45.8
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 2.5e-50 203.0 240 48.3
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 3.3e-50 202.6 265 43.8
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 4.3e-50 202.2 261 43.7
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 5.6e-50 201.8 170 62.9
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 7.3e-50 201.4 250 43.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.2e-49 200.7 235 48.9
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 2.1e-49 199.9 257 43.2
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.6e-49 199.1 229 47.6
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 8.0e-49 198.0 229 47.2
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 2.3e-48 196.4 253 43.5
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 2.3e-48 196.4 239 47.3
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 2.3e-48 196.4 224 49.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 5.2e-48 195.3 234 49.1
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 5.2e-48 195.3 185 54.6
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.5e-47 193.7 229 47.6
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 1.3e-46 190.7 225 48.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 1.7e-46 190.3 240 47.5
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.2e-46 189.9 173 54.9
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.2e-46 189.9 245 45.7
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 1.1e-45 187.6 248 45.2
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.9e-45 186.8 257 44.7
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.1e-44 183.3 151 63.6
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 6.0e-44 181.8 260 41.2
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.7e-43 180.3 164 52.4
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 3.0e-43 179.5 237 44.3
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 6.6e-43 178.3 217 48.4
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 2.8e-41 172.9 241 39.8
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 4.7e-41 172.2 252 43.7
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 2.3e-40 169.9 251 37.1
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.5e-39 167.2 252 37.3
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 2.6e-39 166.4 241 38.2
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 9.9e-39 164.5 237 40.9
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.9e-37 160.2 176 52.3
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.9e-37 160.2 179 49.2
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.4e-37 159.8 181 54.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 3.2e-37 159.5 249 39.4
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 7.1e-37 158.3 233 41.6
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.9e-34 150.2 249 37.8
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 3.6e-33 146.0 223 39.5
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.4e-32 143.3 164 51.2
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.0e-27 127.9 265 32.8
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 1.3e-22 110.9 195 36.9
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.1e-21 107.8 169 40.8
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.4e-21 107.5 184 37.0
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 3.0e-19 99.8 75 68.0
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 3.9e-19 99.4 144 41.7
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 5.1e-19 99.0 97 56.7
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.1e-18 97.8 136 41.9
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 9.6e-18 94.7 163 36.8
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.1e-17 93.6 115 42.6
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.0e-16 89.4 254 31.1
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.7e-14 84.0 251 29.5
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 2.9e-14 83.2 60 63.3
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 5.1e-11 72.4 200 30.5
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 3.7e-09 66.2 49 61.2
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.1e-08 64.7 123 35.8
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 6.9e-08 62.0 48 58.3


User provided reference genes

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