Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04961 Eucalyptus grandis HOM05D008093 ORTHO05D009840 4.0e-41 171.0 87 100.0
Nitab4.5_0002667g0090 Nicotiana tabacum HOM05D008093 ORTHO05D009840 8.1e-10 67.0 50 60.0
FvH4_1g13550 Fragaria vesca HOM05D008093 ORTHO05D009840 2.4e-09 65.5 87 42.5
FAN26G1298 Fragaria x ananassa HOM05D008093 ORTHO05D009840 2.4e-09 65.5 87 42.5
Potri.005G058800 Populus trichocarpa HOM05D008093 ORTHO05D009840 3.1e-09 65.1 52 59.6
FAN19G1201 Fragaria x ananassa HOM05D008093 ORTHO05D009840 5.3e-09 64.3 52 61.5
QL06p028768 Quercus lobata HOM05D008093 ORTHO05D009840 6.9e-09 63.9 73 43.8
CiPaw.04G083000 Carya illinoinensis HOM05D008093 ORTHO05D009840 9.0e-09 63.5 55 56.4
MBI03_g00424_MAGBIO Magnolia biondii HOM05D008093 ORTHO05D009840 9.0e-09 63.5 74 48.6
ClCG02G000540 Citrullus lanatus HOM05D008093 ORTHO05D009840 1.2e-08 63.2 47 57.4
FAN23G2512 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.2e-08 63.2 52 61.5
FAN28G2095 Fragaria x ananassa HOM05D008093 ORTHO05D009840 1.2e-08 63.2 52 61.5
CsaV3_2G018270 Cucumis sativus L. HOM05D008093 ORTHO05D009840 1.5e-08 62.8 47 57.4
Nitab4.5_0000856g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 1.5e-08 62.8 72 41.7
COL.COLO4_35729 Corchorus olitorius HOM05D008093 ORTHO05D009840 2.6e-08 62.0 49 57.1
Nitab4.5_0002667g0080 Nicotiana tabacum HOM05D008093 ORTHO05D009840 3.4e-08 61.6 50 54.0
CiPaw.04G083200 Carya illinoinensis HOM05D008093 ORTHO05D009840 4.4e-08 61.2 55 54.5
Hma1.2p1_0476F.1_g160900 Hydrangea macrophylla HOM05D008093 ORTHO05D009840 4.4e-08 61.2 47 61.7
Manes.12G154600 Manihot esculenta HOM05D008093 ORTHO05D009840 5.8e-08 60.8 52 59.6
Sed0027082 Sechium edule HOM05D008093 ORTHO05D009840 5.8e-08 60.8 47 57.4
QL06p028766 Quercus lobata HOM05D008093 ORTHO05D009840 7.6e-08 60.5 65 46.2
Nitab4.5_0013695g0010 Nicotiana tabacum HOM05D008093 ORTHO05D009840 9.9e-08 60.1 50 52.0
RcHm_v2.0_Chr2g0101941 Rosa chinensis HOM05D008093 ORTHO05D009840 9.9e-08 60.1 52 57.7
MELO3C023245.2 Cucumis melo HOM05D008093 ORTHO05D009840 1.3e-07 59.7 47 55.3
Dinv24346 Davidia involucrata HOM05D008093 ORTHO05D009840 1.7e-07 59.3 49 53.1
Peaxi162Scf00589g00323 Petunia axillaris HOM05D008093 ORTHO05D009840 1.7e-07 59.3 50 52.0
PGSC0003DMG400028663 Solanum tuberosum HOM05D008093 ORTHO05D009840 1.7e-07 59.3 51 52.9
Gohir.D04G022800 Gossypium hirsutum HOM05D008093 ORTHO05D009840 2.2e-07 58.9 52 53.8
Thecc.01G130900 Theobroma cacao HOM05D008093 ORTHO05D009840 2.9e-07 58.5 76 39.5
Potri.007G109200 Populus trichocarpa HOM05D008093 ORTHO05D009840 4.9e-07 57.8 70 47.1
Solyc11g005930.2 Solanum lycopersicum HOM05D008093 ORTHO05D009840 4.9e-07 57.8 51 51.0
Zm00001eb138530 Zea mays HOM05D008093 ORTHO05D009840 4.9e-07 57.8 68 54.4
MD15G1265300 Malus domestica HOM05D008093 ORTHO05D009840 6.4e-07 57.4 49 59.2
MD02G1150700 Malus domestica HOM05D008093 ORTHO05D009840 8.4e-07 57.0 49 59.2
Gohir.A05G385600 Gossypium hirsutum HOM05D008093 ORTHO05D009840 1.1e-06 56.6 52 51.9
Gorai.012G034100 Gossypium raimondii HOM05D008093 ORTHO05D009840 1.1e-06 56.6 52 51.9
Sopen11g001870 Solanum pennellii HOM05D008093 ORTHO05D009840 1.1e-06 56.6 51 49.0
Actinidia06628 Actinidia chinensis HOM05D008093 ORTHO05D009840 1.4e-06 56.2 55 49.1
Duzib264G0739 Durio zibethinus HOM05D008093 ORTHO05D009840 1.4e-06 56.2 65 47.7
Sc09g0002370 Simmondsia chinensis HOM05D008093 ORTHO05D009840 1.4e-06 56.2 64 48.4
Zm00001eb409100 Zea mays HOM05D008093 ORTHO05D009840 1.4e-06 56.2 58 58.6
Sabra07G0089300 Salix brachista HOM05D008093 ORTHO05D009840 2.4e-06 55.5 51 54.9
Ciclev10002949m.g Citrus clementina HOM05D008093 ORTHO05D009840 3.2e-06 55.1 68 42.6
EL10Ac4g09593 Beta vulgaris HOM05D008093 ORTHO05D009840 4.2e-06 54.7 48 54.2
Cc07_g18370 Coffea canephora HOM05D008093 ORTHO05D009840 4.2e-06 54.7 70 44.3
Os12g0187800 Oryza sativa ssp. japonica HOM05D008093 ORTHO05D009840 4.2e-06 54.7 40 67.5
Glyma.05G191500 Glycine max HOM05D008093 ORTHO05D009840 5.4e-06 54.3 44 56.8
Glyma.08G156600 Glycine max HOM05D008093 ORTHO05D009840 5.4e-06 54.3 44 56.8
VMungo0251G0054 Vigna mungo HOM05D008093 ORTHO05D009840 5.4e-06 54.3 40 62.5
Aa31sc146G10 Aethionema arabicum HOM05D010996 ORTHO05D009840 7.1e-06 53.9 53 54.7
Cfa002886 Carpinus fangiana HOM05D008093 ORTHO05D009840 7.1e-06 53.9 49 57.1
Phvul.002G271900 Phaseolus vulgaris HOM05D008093 ORTHO05D009840 7.1e-06 53.9 54 50.0
Oeu042288.1 Olea europaea HOM05D008093 ORTHO05D009840 9.3e-06 53.5 44 59.1


User provided reference genes

Program Settings