Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04867 Eucalyptus grandis HOM05D006410 ORTHO05D007914 7.9e-118 427.2 223 100.0
Eucgr.J00376 Eucalyptus grandis HOM05D006410 ORTHO05D007914 1.8e-117 426.0 223 99.6
Eucgr.G01626 Eucalyptus grandis HOM05D006410 ORTHO05D007914 1.9e-116 422.5 223 99.1
Eucgr.A00566 Eucalyptus grandis HOM05D006410 ORTHO05D007914 3.3e-116 421.8 223 99.1
Eucgr.G00130 Eucalyptus grandis HOM05D006410 ORTHO05D007914 9.7e-116 420.2 223 98.7
Eucgr.K01292 Eucalyptus grandis HOM05D006410 ORTHO05D007914 2.6e-113 412.1 223 97.3
Dinv16966 Davidia involucrata HOM05D006410 ORTHO05D007914 1.2e-84 317.0 225 73.8
PGR004G0643 Punica granatum HOM05D006410 ORTHO05D007914 5.7e-84 314.7 224 74.1
TAR633G1493 Trochodendron aralioides HOM05D006410 ORTHO05D007914 2.4e-82 309.3 225 72.9
GSVIVG01030169001 Vitis vinifera HOM05D006410 ORTHO05D007914 2.4e-82 309.3 225 72.0
Ciclev10012138m.g Citrus clementina HOM05D006410 ORTHO05D007914 2.0e-81 306.2 224 69.6
Sabra06G0085200 Salix brachista HOM05D006410 ORTHO05D007914 1.5e-79 300.1 224 71.0
Atru.chr8.91 Acer truncatum HOM05D006410 ORTHO05D007914 2.5e-79 299.3 224 70.1
Potri.006G109500 Populus trichocarpa HOM05D006410 ORTHO05D007914 5.5e-79 298.1 224 71.0
QL07p031892 Quercus lobata HOM05D006410 ORTHO05D007914 2.7e-78 295.8 223 70.9
Cfa013491 Carpinus fangiana HOM05D006410 ORTHO05D007914 1.4e-77 293.5 223 70.4
Rhsim05G0231700 Rhododendron simsii HOM05D006410 ORTHO05D007914 2.3e-77 292.7 233 67.0
Haze_22079 Corylus avellana HOM05D006410 ORTHO05D007914 4.0e-77 292.0 223 69.5
Prupe.6G295400 Prunus persica HOM05D006410 ORTHO05D007914 2.6e-76 289.3 223 68.2
CiPaw.10G165500 Carya illinoinensis HOM05D006410 ORTHO05D007914 3.4e-76 288.9 223 68.6
PSO339G1476 Papaver somniferum HOM05D006410 ORTHO05D007914 4.4e-76 288.5 225 67.6
ECA247G0827 Erigeron canadensis HOM05D006410 ORTHO05D007914 1.3e-75 287.0 226 68.6
Thecc.04G150000 Theobroma cacao HOM05D006410 ORTHO05D007914 1.3e-75 287.0 225 69.3
CsaV3_4G027230 Cucumis sativus L. HOM05D006410 ORTHO05D007914 1.7e-75 286.6 224 66.5
PSO384G4459 Papaver somniferum HOM05D006410 ORTHO05D007914 2.2e-75 286.2 225 67.1
Lsat_1_v5_gn_9_39501 Lactuca sativa HOM05D006410 ORTHO05D007914 4.9e-75 285.0 226 68.1
Duzib212G0115 Durio zibethinus HOM05D006410 ORTHO05D007914 1.4e-74 283.5 224 70.1
COL.COLO4_03931 Corchorus olitorius HOM05D006410 ORTHO05D007914 1.8e-74 283.1 223 68.2
RcHm_v2.0_Chr3g0460291 Rosa chinensis HOM05D006410 ORTHO05D007914 2.4e-74 282.7 225 67.6
Actinidia20795 Actinidia chinensis HOM05D006410 ORTHO05D007914 3.1e-74 282.3 225 66.2
ClCG04G006320 Citrullus lanatus HOM05D006410 ORTHO05D007914 5.4e-74 281.6 224 66.5
Aqoxy4G03284 Aquilegia oxysepala HOM05D006410 ORTHO05D007914 7.0e-74 281.2 223 66.8
Manes.09G123200 Manihot esculenta HOM05D006410 ORTHO05D007914 9.2e-74 280.8 225 69.3
TWI77G0542 Tripterygium wilfordii HOM05D006410 ORTHO05D007914 1.2e-73 280.4 225 67.6
FAN09G0831 Fragaria x ananassa HOM05D006410 ORTHO05D007914 4.5e-73 278.5 225 67.1
Glyma.18G212900 Glycine max HOM05D006410 ORTHO05D007914 4.5e-73 278.5 223 65.5
FvH4_6g09660 Fragaria vesca HOM05D006410 ORTHO05D007914 7.7e-73 277.7 225 66.7
FAN14G0316 Fragaria x ananassa HOM05D006410 ORTHO05D007914 7.7e-73 277.7 225 66.7
Lalb_Chr03g0043841 Lupinus albus HOM05D006410 ORTHO05D007914 7.7e-73 277.7 225 63.6
FAN05G4204 Fragaria x ananassa HOM05D006410 ORTHO05D007914 1.0e-72 277.3 225 66.7
Hma1.2p1_0537F.1_g174300 Hydrangea macrophylla HOM05D006410 ORTHO05D007914 1.0e-72 277.3 225 65.3
Solyc10g085690.2 Solanum lycopersicum HOM05D006410 ORTHO05D007914 1.7e-72 276.6 224 65.2
HanXRQChr15g0464751 Helianthus annuus HOM05D006410 ORTHO05D007914 2.9e-72 275.8 231 66.2
FAN02G1808 Fragaria x ananassa HOM05D006410 ORTHO05D007914 3.8e-72 275.4 225 65.8
arahy.Tifrunner.gnm1.ann1.K0FU58 Arachis hypogaea HOM05D006410 ORTHO05D007914 5.0e-72 275.0 223 64.6
arahy.Tifrunner.gnm1.ann1.LV5WBC Arachis hypogaea HOM05D006410 ORTHO05D007914 5.0e-72 275.0 223 64.1
CAN.G1018.3 Capsicum annuum HOM05D006410 ORTHO05D007914 6.6e-72 274.6 224 66.1
vmacro20378 Vaccinium macrocarpon HOM05D006410 ORTHO05D007914 8.6e-72 274.2 199 71.4
MD04G1175900 Malus domestica HOM05D006410 ORTHO05D007914 2.5e-71 272.7 223 65.0
Sopen10g035110 Solanum pennellii HOM05D006410 ORTHO05D007914 2.5e-71 272.7 224 64.3
TPR.G24331 Trifolium pratense HOM05D006410 ORTHO05D007914 2.5e-71 272.7 224 63.8
VMungo1383G1039 Vigna mungo HOM05D006410 ORTHO05D007914 7.3e-71 271.2 224 65.2
Lj1g0017463 Lotus japonicus HOM05D006410 ORTHO05D007914 9.5e-71 270.8 225 64.9
Medtr7g073510 Medicago truncatula HOM05D006410 ORTHO05D007914 9.5e-71 270.8 224 64.3
Psat3g118640 Pisum sativum HOM05D006410 ORTHO05D007914 9.5e-71 270.8 224 63.8
MD12G1190300 Malus domestica HOM05D006410 ORTHO05D007914 1.2e-70 270.4 226 65.5
Gohir.D02G003000 Gossypium hirsutum HOM05D006410 ORTHO05D007914 2.1e-70 269.6 224 66.5
Phvul.008G081500 Phaseolus vulgaris HOM05D006410 ORTHO05D007914 2.8e-70 269.2 225 64.9
Gorai.005G003500 Gossypium raimondii HOM05D006410 ORTHO05D007914 3.6e-70 268.9 224 66.1
Glyma.09G273700 Glycine max HOM05D006410 ORTHO05D007914 8.0e-70 267.7 221 63.8
Nitab4.5_0009611g0010 Nicotiana tabacum HOM05D006410 ORTHO05D007914 1.4e-69 266.9 224 65.6
Peaxi162Scf00146g01120 Petunia axillaris HOM05D006410 ORTHO05D007914 1.4e-69 266.9 224 63.8
MSTRG.5489 Avicennia marina HOM05D006410 ORTHO05D007914 3.0e-69 265.8 220 64.1
Gohir.A02G002700 Gossypium hirsutum HOM05D006410 ORTHO05D007914 6.8e-69 264.6 224 66.1
Nn2g10260 Nelumbo nucifera HOM05D006410 ORTHO05D007914 1.3e-67 260.4 222 62.2
Nitab4.5_0000381g0170 Nicotiana tabacum HOM05D006410 ORTHO05D007914 2.4e-66 256.1 258 57.0
EL10Ac7g17116 Beta vulgaris HOM05D006410 ORTHO05D007914 1.2e-65 253.8 225 60.9
Thhalv10017800m.g Eutrema salsugineum HOM05D006410 ORTHO05D007914 2.0e-65 253.1 212 66.5
CDE04G0338 Ceratophyllum demersum HOM05D006410 ORTHO05D007914 7.8e-65 251.1 222 58.1
AUR62029781 Chenopodium quinoa HOM05D006410 ORTHO05D007914 7.8e-65 251.1 223 60.1
ATR1127G206 Amborella trichopoda HOM05D006410 ORTHO05D007914 1.7e-64 250.0 221 60.2
SalBow5G5142 Salvia bowleyana HOM05D006410 ORTHO05D007914 8.6e-64 247.7 223 63.2
AL4G35850 Arabidopsis lyrata HOM05D006410 ORTHO05D007914 1.9e-63 246.5 180 69.4
Cc06_g00300 Coffea canephora HOM05D006410 ORTHO05D007914 1.9e-63 246.5 226 61.1
THA.LOC104806212 Tarenaya hassleriana HOM05D006410 ORTHO05D007914 1.9e-63 246.5 185 67.6
Carub.0004s2056 Capsella rubella HOM05D006410 ORTHO05D007914 4.3e-63 245.4 191 66.5
arahy.Tifrunner.gnm1.ann1.2Y9ZDG Arachis hypogaea HOM05D006410 ORTHO05D007914 7.3e-63 244.6 223 60.1
CANSAT21G1321 Cannabis sativa HOM05D006410 ORTHO05D007914 7.3e-63 244.6 224 63.4
CARHR133250 Cardamine hirsuta HOM05D006410 ORTHO05D007914 9.5e-63 244.2 192 67.7
Sp4g20910 Schrenkiella parvula HOM05D006410 ORTHO05D007914 1.2e-62 243.8 178 69.7
Hund19754 Selenicereus undatus HOM05D006410 ORTHO05D007914 6.2e-62 241.5 224 59.8
HPP92_026801 Vanilla planifolia HOM05D006410 ORTHO05D007914 8.0e-62 241.1 222 58.6
AT2G38570 Arabidopsis thaliana HOM05D006410 ORTHO05D007914 1.8e-61 240.0 184 67.9
HPP92_000776 Vanilla planifolia HOM05D006410 ORTHO05D007914 1.8e-61 240.0 222 58.1
BraA03t11374Z Brassica rapa HOM05D006410 ORTHO05D007914 4.0e-61 238.8 180 67.2
Zm00001eb395200 Zea mays HOM05D006410 ORTHO05D007914 4.0e-61 238.8 227 57.7
BcaB01g03675 Brassica carinata HOM05D006410 ORTHO05D007914 5.2e-61 238.4 194 64.9
BcaC01g05529 Brassica carinata HOM05D006410 ORTHO05D007914 3.4e-60 235.7 180 66.1
BolC3t14920H Brassica oleracea HOM05D006410 ORTHO05D007914 3.4e-60 235.7 180 66.1
A03p21390 Brassica napus HOM05D006410 ORTHO05D007914 7.5e-60 234.6 180 66.7
C03p25260 Brassica napus HOM05D006410 ORTHO05D007914 3.7e-59 232.3 180 65.0
Sc07g0005960 Simmondsia chinensis HOM05D006410 ORTHO05D007914 6.4e-59 231.5 163 71.8
arahy.Tifrunner.gnm1.ann1.PEH6CG Arachis hypogaea HOM05D006410 ORTHO05D007914 1.6e-57 226.9 213 59.6
SGA_v2.0_scaffold85G26601 Striga asiatica HOM05D006410 ORTHO05D007914 1.7e-56 223.4 259 51.4
arahy.Tifrunner.gnm1.ann1.A09QMR Arachis hypogaea HOM05D006410 ORTHO05D007914 3.0e-56 222.6 246 53.7
Lj3A940G60 Lonicera japonica HOM05D006410 ORTHO05D007914 1.5e-52 210.3 131 80.2
SEGI_21416 Sequoiadendron giganteum HOM05D006410 ORTHO05D007914 8.3e-51 204.5 236 47.0
Ca_07767_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 4.6e-49 198.7 131 75.6
CSS0050432 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 6.0e-49 198.4 166 66.3
SalBow5G0627 Salvia bowleyana HOM05D006410 ORTHO05D007914 2.3e-48 196.4 188 60.1
CSS0030024 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 1.1e-47 194.1 155 68.4
BcaB01g00971 Brassica carinata HOM05D006410 ORTHO05D007914 1.1e-45 187.6 184 57.1
Ca_07774_v3 Cicer arietinum L. HOM05D006410 ORTHO05D007914 5.2e-45 185.3 155 63.9
Cpa.g.sc86.77 Carica papaya HOM05D006410 ORTHO05D007914 7.6e-44 181.4 163 62.6
AagrBONN_evm.TU.Sc2ySwM_344.4011 Anthoceros agrestis HOM05D006410 ORTHO05D007914 1.4e-37 160.6 220 41.8
arahy.Tifrunner.gnm1.ann1.CPU7B3 Arachis hypogaea HOM05D006410 ORTHO05D007914 8.4e-35 151.4 191 49.2
MELO3C025226.2 Cucumis melo HOM05D006410 ORTHO05D007914 3.2e-34 149.4 100 74.0
Os03g0334100 Oryza sativa ssp. japonica HOM05D006410 ORTHO05D007914 7.3e-31 138.3 99 68.7
CSS0025367 Camellia sinensis var. sinensis HOM05D006410 ORTHO05D007914 2.4e-29 133.3 85 77.6
RhsimUnG0084100 Rhododendron simsii HOM05D006410 ORTHO05D007914 1.2e-28 131.0 85 76.5
RhsimUnG0080900 Rhododendron simsii HOM05D006410 ORTHO05D007914 3.4e-28 129.4 84 76.2
Sed0027859 Sechium edule HOM05D006410 ORTHO05D007914 3.2e-26 122.9 84 73.8
MCO09G517 Micromonas commoda HOM05D006410 ORTHO05D007914 7.4e-23 111.7 170 34.7
CBR_g644 Chara braunii HOM05D006410 ORTHO05D007914 4.5e-20 102.4 215 31.2
Duzib151G0462 Durio zibethinus HOM05D006410 ORTHO05D007914 1.3e-19 100.9 61 80.3
SEGI_07330 Sequoiadendron giganteum HOM05D006410 ORTHO05D007914 4.8e-14 82.4 93 46.2
CDE04G1109 Ceratophyllum demersum HOM05D040252 ORTHO05D007914 1.1e-13 81.3 74 60.8
Lsat_1_v5_gn_8_97960 Lactuca sativa HOM05D006410 ORTHO05D007914 2.6e-12 76.6 56 66.1
Cre17.g738200 Chlamydomonas reinhardtii HOM05D006410 ORTHO05D007914 4.6e-09 65.9 166 31.3
Eucgr.E03158 Eucalyptus grandis HOM05D006410 ORTHO05D007914 5.1e-08 62.4 32 100.0


User provided reference genes

Program Settings