Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.5e-205 719.2 337 100.0
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.5e-173 612.8 392 77.3
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.5e-168 596.3 353 81.9
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.1e-167 592.4 284 98.2
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.5e-165 584.7 384 75.3
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 5.6e-99 365.2 191 91.6
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 4.0e-97 359.0 343 53.9
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 1.9e-94 350.1 381 48.6
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 9.2e-94 347.8 369 47.2
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 2.7e-93 346.3 378 49.5
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 3.0e-92 342.8 371 49.6
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 1.1e-91 340.9 378 49.5
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 1.9e-91 340.1 358 50.0
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 1.9e-91 340.1 366 48.9
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 4.3e-91 339.0 372 49.2
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 5.6e-91 338.6 370 47.3
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 9.5e-91 337.8 374 48.1
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.6e-90 337.0 370 47.3
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.6e-90 337.0 362 48.6
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 3.6e-90 335.9 374 47.6
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 6.2e-90 335.1 382 46.6
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 4.4e-88 328.9 370 48.1
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 8.4e-87 324.7 384 44.3
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.4e-86 323.9 384 44.0
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 3.2e-86 322.8 362 47.2
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 4.6e-85 318.9 372 46.5
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 4.6e-85 318.9 380 45.5
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 3.9e-84 315.8 368 47.0
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 6.6e-84 315.1 382 44.2
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 8.6e-84 314.7 384 44.3
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 4.3e-83 312.4 371 46.1
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 5.6e-83 312.0 340 47.9
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 9.6e-83 311.2 362 45.6
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 8.1e-82 308.1 363 47.1
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 8.1e-82 308.1 361 46.5
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 5.2e-81 305.4 362 45.0
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 6.8e-81 305.1 372 45.2
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 6.8e-81 305.1 379 44.6
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 7.6e-80 301.6 385 43.6
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 1.3e-79 300.8 380 46.3
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 2.2e-79 300.1 377 44.0
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 2.2e-79 300.1 364 45.9
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 6.4e-79 298.5 362 45.3
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 9.3e-78 294.7 374 44.1
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 1.2e-77 294.3 367 43.9
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 2.1e-77 293.5 364 45.3
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 7.8e-77 291.6 366 46.4
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 1.3e-76 290.8 366 44.0
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 3.0e-76 289.7 375 44.0
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 1.1e-75 287.7 360 44.7
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 1.1e-75 287.7 392 43.6
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 2.5e-75 286.6 348 46.3
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 3.3e-75 286.2 316 48.1
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 5.6e-75 285.4 351 45.0
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 1.6e-74 283.9 368 43.2
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 2.1e-74 283.5 368 43.8
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 3.6e-74 282.7 376 42.0
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 4.0e-73 279.3 377 41.1
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 5.3e-73 278.9 354 43.5
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 5.3e-73 278.9 370 41.9
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 9.0e-73 278.1 381 42.3
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 9.0e-73 278.1 356 43.0
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 1.2e-72 277.7 384 42.7
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 2.6e-72 276.6 362 43.6
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 3.4e-72 276.2 364 43.1
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 2.2e-71 273.5 414 39.9
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 1.1e-70 271.2 381 40.9
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 1.9e-70 270.4 375 42.7
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 5.4e-70 268.9 375 41.9
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 1.2e-69 267.7 371 40.7
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 1.2e-69 267.7 366 40.4
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 1.3e-68 264.2 372 41.4
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 5.1e-68 262.3 361 42.7
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 8.7e-68 261.5 303 45.5
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 1.1e-67 261.2 361 42.1
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 2.5e-67 260.0 370 41.4
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 3.3e-67 259.6 373 38.9
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 4.3e-67 259.2 372 41.1
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 5.6e-67 258.8 378 40.7
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 1.3e-66 257.7 383 39.7
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 5.3e-65 252.3 377 41.4
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 6.9e-65 251.9 379 40.1
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 9.0e-65 251.5 372 41.1
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 2.0e-64 250.4 386 38.9
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 2.0e-64 250.4 380 38.7
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 2.0e-64 250.4 400 38.8
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 2.0e-64 250.4 390 38.5
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 2.2e-63 246.9 365 39.2
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 3.8e-63 246.1 386 38.6
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 6.4e-63 245.4 382 40.3
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 6.4e-63 245.4 365 40.3
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 6.4e-63 245.4 382 40.8
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 1.1e-62 244.6 371 39.6
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 1.1e-62 244.6 344 41.3
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 3.2e-62 243.0 364 41.2
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 7.1e-62 241.9 376 38.3
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 9.3e-62 241.5 366 38.8
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 3.5e-61 239.6 367 39.8
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 1.8e-60 237.3 347 40.1
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 8.7e-60 235.0 364 38.5
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 1.8e-57 227.3 356 38.2
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 2.4e-57 226.9 350 38.6
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 2.0e-56 223.8 361 40.4
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 1.4e-54 217.6 296 42.2
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 1.9e-54 217.2 380 35.3
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 1.2e-53 214.5 329 38.3
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 5.7e-51 205.7 280 41.4
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 1.5e-48 197.6 410 32.0
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 4.5e-48 196.1 408 32.6
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 3.5e-45 186.4 258 41.5
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 3.5e-45 186.4 378 36.2
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.7e-44 182.2 156 57.7
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 2.6e-40 170.2 267 39.0
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 6.5e-39 165.6 210 46.2
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 1.0e-31 141.7 276 34.8
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 6.5e-31 139.0 477 26.8
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 2.2e-26 124.0 133 44.4
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 6.7e-20 102.4 91 48.4
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 1.7e-18 97.8 91 49.5
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 4.7e-13 79.7 117 38.5
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 6.8e-12 75.9 66 54.5
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 3.7e-10 70.1 115 33.0
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 2.7e-08 63.9 206 28.2
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 7.7e-08 62.4 64 50.0
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 1.0e-07 62.0 98 33.7
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 1.3e-07 61.6 177 29.4
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 2.9e-07 60.5 120 31.7
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 5.0e-07 59.7 210 27.1
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 6.5e-07 59.3 206 23.8
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 6.5e-07 59.3 118 33.1
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 1.1e-06 58.5 227 26.4
Oeu028521.1 Olea europaea HOM05D006130 ORTHO05D007491 1.1e-06 58.5 31 74.2
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 1.9e-06 57.8 103 34.0
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 2.5e-06 57.4 145 30.3
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.2e-06 57.0 123 30.1
Zm00001eb367030 Zea mays HOM05D006130 ORTHO05D007491 3.2e-06 57.0 41 61.0
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 5.5e-06 56.2 111 31.5
SHI11720 Sapria himalayana HOM05D006130 ORTHO05D007491 5.5e-06 56.2 31 74.2
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 7.2e-06 55.8 94 36.2
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 9.5e-06 55.5 177 27.7


User provided reference genes

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