Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 9.5e-197 689.9 325 100.0
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 3.5e-167 591.7 284 98.2
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 8.5e-145 517.3 350 73.4
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 5.0e-137 491.5 292 81.5
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.5e-133 479.9 323 73.7
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 2.5e-88 329.7 321 53.6
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 3.3e-88 329.3 354 48.3
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 7.3e-88 328.2 346 49.7
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.3e-86 323.2 356 47.2
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 5.2e-86 322.0 337 47.5
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 6.8e-86 321.6 356 47.2
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 2.6e-85 319.7 339 49.3
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 2.6e-85 319.7 356 48.0
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 7.5e-85 318.2 347 47.8
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 8.3e-84 314.7 351 48.1
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 1.4e-83 313.9 352 46.9
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 4.1e-83 312.4 335 49.3
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 2.1e-82 310.1 338 49.1
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 2.7e-82 309.7 329 49.8
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 6.6e-81 305.1 339 48.7
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 3.3e-80 302.8 340 46.2
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 4.7e-79 298.9 340 47.1
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.1e-78 297.7 342 45.0
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 1.8e-78 297.0 342 45.0
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 2.3e-78 296.6 333 47.7
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 5.2e-78 295.4 328 47.9
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 6.8e-78 295.0 335 46.6
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 1.3e-76 290.8 342 45.3
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 1.3e-76 290.8 344 45.6
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 2.2e-76 290.0 361 45.2
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 2.9e-76 289.7 345 47.0
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 8.4e-76 288.1 335 45.7
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.1e-75 287.7 342 45.3
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 1.1e-75 287.7 337 46.0
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 2.4e-75 286.6 392 42.6
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 5.4e-75 285.4 370 43.8
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 3.5e-74 282.7 333 46.8
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 6.0e-74 282.0 339 46.0
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 7.8e-74 281.6 346 45.4
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 1.0e-73 281.2 335 46.6
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 1.3e-73 280.8 344 45.1
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 8.6e-73 278.1 338 45.0
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 1.5e-72 277.3 337 44.5
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 5.6e-72 275.4 346 44.2
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 9.6e-72 274.6 350 43.1
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 1.6e-71 273.9 343 47.2
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 1.6e-71 273.9 343 44.0
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 1.1e-70 271.2 340 45.9
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 1.4e-70 270.8 338 43.2
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 2.4e-70 270.0 340 45.0
MSTRG.15753 Avicennia marina HOM05D006130 ORTHO05D007491 8.9e-70 268.1 340 44.1
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 1.2e-69 267.7 334 44.3
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 1.5e-69 267.3 282 49.6
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 2.6e-69 266.5 331 45.6
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 3.4e-69 266.2 345 43.8
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 5.8e-69 265.4 349 42.1
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 5.8e-69 265.4 130 94.6
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 2.9e-68 263.1 351 43.9
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 1.9e-67 260.4 329 43.5
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 3.2e-67 259.6 333 42.6
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 5.4e-67 258.8 340 42.4
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 9.3e-67 258.1 335 43.0
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 1.2e-66 257.7 343 42.9
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 1.6e-66 257.3 339 41.6
Nitab4.5_0004840g0040 Nicotiana tabacum HOM05D006130 ORTHO05D007491 2.1e-66 256.9 336 43.2
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 7.8e-66 255.0 335 40.9
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 1.7e-65 253.8 347 42.1
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 3.0e-65 253.1 344 41.3
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 3.9e-65 252.7 386 39.4
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 3.3e-64 249.6 289 45.7
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 4.3e-64 249.2 336 42.9
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 4.3e-64 249.2 336 43.2
Thhalv10004393m.g Eutrema salsugineum HOM05D006130 ORTHO05D007491 2.8e-63 246.5 350 42.6
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 8.1e-63 245.0 338 41.4
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 8.1e-63 245.0 344 41.3
Sp2g27910 Schrenkiella parvula HOM05D006130 ORTHO05D007491 7.6e-61 238.4 346 41.0
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 4.9e-60 235.7 373 39.1
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 6.4e-60 235.3 339 39.5
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 6.4e-60 235.3 363 39.1
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 1.4e-59 234.2 341 40.5
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 1.9e-59 233.8 345 40.0
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 3.2e-59 233.0 342 38.3
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 3.2e-59 233.0 344 40.4
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 9.3e-59 231.5 347 39.5
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 9.3e-59 231.5 340 41.8
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 1.2e-58 231.1 341 41.9
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 1.2e-58 231.1 341 41.9
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 2.1e-58 230.3 353 39.7
Hund03536 Selenicereus undatus HOM05D006130 ORTHO05D007491 2.7e-58 229.9 358 38.8
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 4.6e-58 229.2 336 41.4
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 1.5e-56 224.2 337 38.9
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 2.5e-56 223.4 343 40.5
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 9.6e-56 221.5 345 40.6
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 2.1e-55 220.3 345 38.0
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 3.6e-55 219.5 344 39.2
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 6.2e-55 218.8 350 39.1
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 1.1e-54 218.0 312 40.4
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 1.1e-54 218.0 337 39.5
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 1.8e-54 217.2 342 37.4
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 1.8e-54 217.2 296 42.2
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 2.4e-54 216.9 336 37.2
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 3.8e-52 209.5 328 37.5
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 4.2e-51 206.1 320 40.6
unitig_62.g23431 Utricularia gibba HOM05D006130 ORTHO05D007491 5.5e-51 205.7 319 38.9
TAR628G0645 Trochodendron aralioides HOM05D006130 ORTHO05D007491 4.3e-48 196.1 280 40.7
SGA_v2.0_scaffold47G17703 Striga asiatica HOM05D006130 ORTHO05D007491 1.3e-47 194.5 352 34.4
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 2.4e-46 190.3 259 42.1
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 5.8e-45 185.7 379 32.5
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 7.6e-45 185.3 309 37.2
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 1.0e-44 184.9 375 33.1
Ah.03g141370 Amaranthus hybridus HOM05D006130 ORTHO05D007491 3.9e-41 172.9 289 39.8
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.5e-40 171.0 132 61.4
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 6.3e-39 165.6 210 46.2
Sc03g0004370 Simmondsia chinensis HOM05D006130 ORTHO05D007491 4.1e-38 162.9 267 38.6
AT5G64830 Arabidopsis thaliana HOM05D006130 ORTHO05D007491 2.0e-29 134.0 275 34.2
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 4.5e-29 132.9 450 26.4
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 1.5e-24 117.9 103 51.5
SGA_v2.0_scaffold34G13625 Striga asiatica HOM05D006130 ORTHO05D007491 1.8e-17 94.4 91 46.2
AagrBONN_evm.TU.Sc2ySwM_228.1848 Anthoceros agrestis HOM05D006130 ORTHO05D007491 2.8e-15 87.0 91 46.2
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 7.7e-13 79.0 112 39.3
Actinidia35264 Actinidia chinensis HOM05D006130 ORTHO05D007491 6.5e-12 75.9 66 54.5
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 6.1e-10 69.3 110 33.6
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 4.4e-08 63.2 211 28.0
SGA_v2.0_scaffold32G12965 Striga asiatica HOM05D006130 ORTHO05D007491 7.5e-08 62.4 64 50.0
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 1.7e-07 61.2 182 29.1
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 2.2e-07 60.8 184 27.2
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 8.2e-07 58.9 215 27.0
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 1.1e-06 58.5 108 33.3
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.1e-06 58.5 111 34.2
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 1.1e-06 58.5 91 34.1
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 1.8e-06 57.8 200 24.0
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.4e-06 57.4 128 29.7
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 3.1e-06 57.0 90 36.7
Zm00001eb367030 Zea mays HOM05D006130 ORTHO05D007491 3.1e-06 57.0 41 61.0
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 7.0e-06 55.8 208 26.4
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 9.1e-06 55.5 94 36.2


User provided reference genes

Program Settings