Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 1.1e-107 393.3 197 100.0
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 6.8e-73 277.7 191 71.7
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 8.4e-71 270.8 185 71.4
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 2.4e-70 269.2 180 74.4
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 2.4e-70 269.2 180 74.4
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 7.1e-70 267.7 182 72.5
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 4.6e-69 265.0 182 72.5
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 1.3e-68 263.5 187 72.2
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 3.9e-68 261.9 194 67.5
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 6.6e-68 261.2 182 72.0
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 6.6e-68 261.2 192 68.8
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.1e-67 260.4 195 67.7
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 1.1e-67 260.4 192 67.7
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.5e-67 260.0 192 68.2
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 2.5e-67 259.2 184 72.8
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 2.5e-67 259.2 183 71.6
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 4.3e-67 258.5 192 68.8
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 4.3e-67 258.5 180 71.7
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 9.6e-67 257.3 192 67.7
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 9.6e-67 257.3 188 67.6
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.6e-66 256.5 193 68.4
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 1.6e-66 256.5 183 69.4
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 4.8e-66 255.0 185 68.6
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 4.8e-66 255.0 189 67.2
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 1.4e-65 253.4 184 66.8
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 3.1e-65 252.3 155 77.4
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 4.0e-65 251.9 197 66.0
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 5.3e-65 251.5 179 69.8
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 6.9e-65 251.1 180 71.1
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 1.2e-64 250.4 184 66.3
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.5e-64 250.0 183 69.9
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 1.5e-64 250.0 197 65.0
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 1.5e-64 250.0 203 65.0
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 1.5e-64 250.0 184 66.8
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 2.6e-64 249.2 186 66.1
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 3.4e-64 248.8 189 67.2
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 1.7e-63 246.5 194 64.9
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 1.7e-63 246.5 180 70.6
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 2.2e-63 246.1 189 66.7
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 3.8e-63 245.4 174 70.7
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 8.4e-63 244.2 180 68.9
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 1.9e-62 243.0 173 69.4
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 1.9e-62 243.0 180 68.9
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 5.4e-62 241.5 190 66.8
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 9.3e-62 240.7 168 69.6
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.6e-61 240.0 197 65.5
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 1.6e-61 240.0 195 63.1
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 1.6e-61 240.0 190 62.6
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 7.8e-61 237.7 183 67.2
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 1.7e-60 236.5 194 64.9
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 1.7e-60 236.5 183 66.7
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 2.3e-60 236.1 197 64.0
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 5.1e-60 235.0 202 60.4
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 6.6e-60 234.6 176 68.2
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 1.5e-59 233.4 183 65.0
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 1.9e-59 233.0 185 63.2
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 2.5e-59 232.6 189 60.8
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 3.3e-59 232.3 296 47.3
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 3.3e-59 232.3 177 64.4
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 4.3e-59 231.9 192 59.9
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 1.3e-58 230.3 180 61.1
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 8.1e-58 227.6 174 64.4
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.1e-57 227.3 189 58.7
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 2.4e-57 226.1 183 60.1
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 3.1e-57 225.7 171 67.3
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 3.1e-57 225.7 180 63.9
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 3.4e-56 222.2 196 59.7
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 5.8e-56 221.5 180 62.8
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 7.6e-56 221.1 175 64.6
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.9e-55 219.2 193 62.2
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 6.4e-55 218.0 169 60.9
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 8.4e-55 217.6 173 60.7
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 8.4e-55 217.6 170 63.5
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 8.4e-55 217.6 170 63.5
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 8.4e-55 217.6 170 63.5
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 5.4e-54 214.9 171 63.7
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 5.4e-54 214.9 165 63.0
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 9.3e-54 214.2 172 63.4
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 2.7e-53 212.6 172 62.2
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 4.6e-53 211.8 172 63.4
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 6.0e-53 211.5 171 63.7
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 1.3e-52 210.3 193 59.1
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 1.8e-52 209.9 170 62.4
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 3.9e-52 208.8 171 62.0
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 3.9e-52 208.8 156 64.7
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 3.9e-52 208.8 179 58.1
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 8.7e-52 207.6 161 63.4
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 1.1e-51 207.2 164 62.2
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 4.8e-50 201.8 185 60.0
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 3.1e-49 199.1 158 59.5
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 3.1e-49 199.1 158 59.5
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.5e-48 196.8 144 62.5
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 4.5e-48 195.3 195 53.3
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 2.9e-47 192.6 178 55.6
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 3.2e-46 189.1 168 52.4
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 8.7e-44 181.0 167 50.3
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 2.8e-42 176.0 127 69.3
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 1.2e-40 170.6 127 69.3
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 4.5e-40 168.7 112 77.7
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 4.2e-38 162.2 160 50.0
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 2.1e-37 159.8 153 53.6
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 2.3e-36 156.4 120 56.7
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 5.3e-33 145.2 111 64.9
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 4.5e-32 142.1 118 56.8
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.2e-31 139.8 109 62.4
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 3.8e-31 139.0 118 57.6
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 5.3e-25 118.6 131 46.6
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 3.2e-22 109.4 97 51.5
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 7.2e-22 108.2 84 63.1
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 1.3e-18 97.4 126 42.9
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 1.5e-16 90.5 149 40.3
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 2.5e-14 83.2 157 35.7
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 2.1e-13 80.1 72 48.6
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 2.4e-09 66.6 64 59.4
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 7.7e-08 61.6 128 26.6
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 1.3e-07 60.8 153 26.8


User provided reference genes

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