Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04706 Eucalyptus grandis HOM05D001489 ORTHO05D001380 1.4e-36 155.6 72 100.0
Eucgr.H04711 Eucalyptus grandis HOM05D001489 ORTHO05D001380 2.1e-32 141.7 72 93.1
Eucgr.H04704 Eucalyptus grandis HOM05D001489 ORTHO05D001380 1.8e-31 138.7 72 90.3
Eucgr.H04702 Eucalyptus grandis HOM05D001489 ORTHO05D001380 6.9e-31 136.7 72 90.3
Eucgr.H04717 Eucalyptus grandis HOM05D001489 ORTHO05D001380 1.7e-29 132.1 72 86.1
RcHm_v2.0_Chr4g0432201 Rosa chinensis HOM05D001489 ORTHO05D001380 2.5e-12 75.1 47 66.0
GSVIVG01000603001 Vitis vinifera HOM05D001489 ORTHO05D001380 2.1e-11 72.0 69 47.8
TAR622G0488 Trochodendron aralioides HOM05D001489 ORTHO05D001380 4.6e-11 70.9 71 47.9
CANSAT01G2567 Cannabis sativa HOM05D001489 ORTHO05D001380 6.1e-11 70.5 59 50.8
Dinv14765 Davidia involucrata HOM05D001489 ORTHO05D001380 7.9e-11 70.1 72 50.0
FAN12G3542 Fragaria x ananassa HOM05D001489 ORTHO05D001380 1.4e-10 69.3 47 57.4
GSVIVG01000598001 Vitis vinifera HOM05D001489 ORTHO05D001380 1.4e-10 69.3 71 45.1
FAN22G1245 Fragaria x ananassa HOM05D001489 ORTHO05D001380 1.8e-10 68.9 58 50.0
FvH4_4g25043 Fragaria vesca HOM05D001489 ORTHO05D001380 2.3e-10 68.6 47 57.4
AUR62005540 Chenopodium quinoa HOM05D001489 ORTHO05D001380 5.1e-10 67.4 64 46.9
MSTRG.13332 Avicennia marina HOM05D001489 ORTHO05D001380 6.7e-10 67.0 73 43.8
Duzib248G0050 Durio zibethinus HOM05D001489 ORTHO05D001380 6.7e-10 67.0 47 57.4
Gorai.005G174100 Gossypium raimondii HOM05D001489 ORTHO05D001380 6.7e-10 67.0 48 62.5
Manes.13G018800 Manihot esculenta HOM05D001489 ORTHO05D001380 6.7e-10 67.0 47 53.2
Aqoxy2G01982 Aquilegia oxysepala HOM05D001489 ORTHO05D001380 8.8e-10 66.6 47 61.7
Cfa009273 Carpinus fangiana HOM05D001489 ORTHO05D001380 2.0e-09 65.5 56 46.4
FAN07G1752 Fragaria x ananassa HOM05D001489 ORTHO05D001380 2.0e-09 65.5 58 46.6
RcHm_v2.0_Chr4g0432111 Rosa chinensis HOM05D001489 ORTHO05D001380 2.0e-09 65.5 44 56.8
Cfa009274 Carpinus fangiana HOM05D001489 ORTHO05D001380 3.3e-09 64.7 54 48.1
Haze_12349 Corylus avellana HOM05D001489 ORTHO05D001380 4.3e-09 64.3 66 45.5
FvH4_4g25040 Fragaria vesca HOM05D001489 ORTHO05D001380 4.3e-09 64.3 51 52.9
FAN12G2671 Fragaria x ananassa HOM05D001489 ORTHO05D001380 4.3e-09 64.3 51 52.9
FAN12G2885 Fragaria x ananassa HOM05D001489 ORTHO05D001380 4.3e-09 64.3 51 52.9
FAN22G0990 Fragaria x ananassa HOM05D001489 ORTHO05D001380 4.3e-09 64.3 51 52.9
Gohir.A03G131300 Gossypium hirsutum HOM05D001489 ORTHO05D001380 4.3e-09 64.3 48 58.3
AUR62024199 Chenopodium quinoa HOM05D001489 ORTHO05D001380 7.4e-09 63.5 64 43.8
Prupe.1G239100 Prunus persica HOM05D001489 ORTHO05D001380 7.4e-09 63.5 52 44.2
GSVIVG01000600001 Vitis vinifera HOM05D001489 ORTHO05D001380 7.4e-09 63.5 69 43.5
Cfa009276 Carpinus fangiana HOM05D001489 ORTHO05D001380 9.7e-09 63.2 64 42.2
Prupe.1G239200 Prunus persica HOM05D001489 ORTHO05D001380 9.7e-09 63.2 52 44.2
RcHm_v2.0_Chr4g0432091 Rosa chinensis HOM05D001489 ORTHO05D001380 9.7e-09 63.2 50 58.0
RcHm_v2.0_Chr4g0432131 Rosa chinensis HOM05D001489 ORTHO05D001380 9.7e-09 63.2 50 58.0
RcHm_v2.0_Chr4g0432151 Rosa chinensis HOM05D001489 ORTHO05D001380 9.7e-09 63.2 50 58.0
FvH4_4g25000 Fragaria vesca HOM05D001489 ORTHO05D001380 1.3e-08 62.8 52 50.0
FAN12G3042 Fragaria x ananassa HOM05D001489 ORTHO05D001380 1.3e-08 62.8 52 50.0
Haze_12307 Corylus avellana HOM05D001489 ORTHO05D001380 1.7e-08 62.4 51 47.1
SGA_v2.0_scaffold87G27111 Striga asiatica HOM05D001489 ORTHO05D001380 2.2e-08 62.0 72 43.1
SalBow8G4502 Salvia bowleyana HOM05D001489 ORTHO05D001380 2.8e-08 61.6 72 44.4
CiPaw.14G082100 Carya illinoinensis HOM05D001489 ORTHO05D001380 4.8e-08 60.8 48 52.1
FAN17G2800 Fragaria x ananassa HOM05D001489 ORTHO05D001380 4.8e-08 60.8 41 61.0
MD16G1107200 Malus domestica HOM05D001489 ORTHO05D001380 4.8e-08 60.8 70 41.4
FAN17G0784 Fragaria x ananassa HOM05D001489 ORTHO05D001380 6.3e-08 60.5 40 55.0
MD13G1107400 Malus domestica HOM05D001489 ORTHO05D001380 6.3e-08 60.5 63 42.9
Rhsim12G0037300 Rhododendron simsii HOM05D001489 ORTHO05D001380 6.3e-08 60.5 64 43.8
RcHm_v2.0_Chr4g0432081 Rosa chinensis HOM05D001489 ORTHO05D001380 6.3e-08 60.5 47 53.2
Cfa009275 Carpinus fangiana HOM05D001489 ORTHO05D001380 8.2e-08 60.1 66 40.9
SalBow8G4016 Salvia bowleyana HOM05D001489 ORTHO05D001380 8.2e-08 60.1 76 40.8
CANSAT01G0876 Cannabis sativa HOM05D001489 ORTHO05D001380 1.1e-07 59.7 74 40.5
DCAR_021749 Daucus carota HOM05D001489 ORTHO05D001380 1.1e-07 59.7 74 37.8
TWI36G0268 Tripterygium wilfordii HOM05D001489 ORTHO05D001380 1.1e-07 59.7 74 39.2
HPP92_008095 Vanilla planifolia HOM05D001489 ORTHO05D001380 1.1e-07 59.7 74 37.8
Migut.E00227 Erythranthe guttata HOM05D001489 ORTHO05D001380 1.4e-07 59.3 72 41.7
Gohir.A03G042132 Gossypium hirsutum HOM05D001489 ORTHO05D001380 1.4e-07 59.3 74 39.2
Hma1.2p1_0090F.1_g045830 Hydrangea macrophylla HOM05D001489 ORTHO05D001380 1.4e-07 59.3 71 38.0
Rhsim08G0047100 Rhododendron simsii HOM05D001489 ORTHO05D001380 1.4e-07 59.3 74 40.5
SalBow1G0402 Salvia bowleyana HOM05D001489 ORTHO05D001380 1.4e-07 59.3 74 40.5
vmacro18306 Vaccinium macrocarpon HOM05D001489 ORTHO05D001380 1.4e-07 59.3 74 40.5
Migut.H00040 Erythranthe guttata HOM05D001489 ORTHO05D001380 1.8e-07 58.9 74 39.2
Aqoxy2G01980 Aquilegia oxysepala HOM05D001489 ORTHO05D001380 2.4e-07 58.5 47 55.3
Cfa009272 Carpinus fangiana HOM05D001489 ORTHO05D001380 2.4e-07 58.5 74 39.2
Hma1.2p1_0079F.1_g041360 Hydrangea macrophylla HOM05D001489 ORTHO05D001380 2.4e-07 58.5 71 38.0
Lj6g0021611 Lotus japonicus HOM05D001489 ORTHO05D001380 2.4e-07 58.5 74 37.8
TWI75G1783 Tripterygium wilfordii HOM05D001489 ORTHO05D001380 2.4e-07 58.5 74 37.8
Dinv11695 Davidia involucrata HOM05D001489 ORTHO05D001380 3.1e-07 58.2 72 41.7
Gohir.D03G125100 Gossypium hirsutum HOM05D001489 ORTHO05D001380 3.1e-07 58.2 74 39.2
Gorai.003G131200 Gossypium raimondii HOM05D001489 ORTHO05D001380 3.1e-07 58.2 74 39.2
MBI08_g23500_MAGBIO Magnolia biondii HOM05D001489 ORTHO05D001380 3.1e-07 58.2 58 43.1
Peaxi162Scf00700g00231 Petunia axillaris HOM05D001489 ORTHO05D001380 3.1e-07 58.2 74 40.5
Ca_25119_v3 Cicer arietinum L. HOM05D001489 ORTHO05D001380 4.1e-07 57.8 74 39.2
Gorai.003G131700 Gossypium raimondii HOM05D001489 ORTHO05D001380 4.1e-07 57.8 74 39.2
SGA_v2.0_scaffold154G37141 Striga asiatica HOM05D001489 ORTHO05D001380 4.1e-07 57.8 70 42.9
CiPaw.14G082200 Carya illinoinensis HOM05D001489 ORTHO05D001380 5.3e-07 57.4 57 47.4
FAN22G0422 Fragaria x ananassa HOM05D001489 ORTHO05D001380 5.3e-07 57.4 44 47.7
Lj7A604G60 Lonicera japonica HOM05D001489 ORTHO05D001380 5.3e-07 57.4 52 44.2
SGA_v2.0_scaffold18G08248 Striga asiatica HOM05D001489 ORTHO05D001380 5.3e-07 57.4 54 42.6
vmacro01103 Vaccinium macrocarpon HOM05D001489 ORTHO05D001380 5.3e-07 57.4 64 43.8
vmacro05907 Vaccinium macrocarpon HOM05D001489 ORTHO05D001380 5.3e-07 57.4 74 37.8
Thecc.02G268700 Theobroma cacao HOM05D001489 ORTHO05D001380 6.9e-07 57.0 74 37.8
CSS0006047 Camellia sinensis var. sinensis HOM05D001489 ORTHO05D001380 9.1e-07 56.6 68 39.7
CANSAT01G0140 Cannabis sativa HOM05D001489 ORTHO05D001380 9.1e-07 56.6 39 59.0
CiPaw.06G064300 Carya illinoinensis HOM05D001489 ORTHO05D001380 9.1e-07 56.6 74 37.8
CiPaw.14G082000 Carya illinoinensis HOM05D001489 ORTHO05D001380 9.1e-07 56.6 43 53.5
COL.COLO4_23548 Corchorus olitorius HOM05D001489 ORTHO05D001380 9.1e-07 56.6 74 37.8
FvH4_4g25041 Fragaria vesca HOM05D001489 ORTHO05D001380 9.1e-07 56.6 44 47.7
Gohir.A03G042600 Gossypium hirsutum HOM05D001489 ORTHO05D001380 9.1e-07 56.6 74 37.8
Lju41A45T59 Lonicera japonica HOM05D001489 ORTHO05D001380 9.1e-07 56.6 75 37.3
Lalb_Chr08g0230811 Lupinus albus HOM05D001489 ORTHO05D001380 9.1e-07 56.6 74 37.8
Nn3g16608 Nelumbo nucifera HOM05D001489 ORTHO05D001380 9.1e-07 56.6 74 37.8
Oeu048596.1 Olea europaea HOM05D001489 ORTHO05D001380 9.1e-07 56.6 74 39.2
PGR102G2568 Punica granatum HOM05D001489 ORTHO05D001380 9.1e-07 56.6 74 39.2
TPR.G14232 Trifolium pratense HOM05D001489 ORTHO05D048891 9.1e-07 56.6 52 44.2
TPR.G25994 Trifolium pratense HOM05D001489 ORTHO05D001380 9.1e-07 56.6 52 44.2
TAR371G1056 Trochodendron aralioides HOM05D001489 ORTHO05D001380 9.1e-07 56.6 74 36.5
Actinidia30695 Actinidia chinensis HOM05D001489 ORTHO05D001380 1.2e-06 56.2 77 37.7
Actinidia36149 Actinidia chinensis HOM05D001489 ORTHO05D001380 1.2e-06 56.2 74 37.8
Ciclev10032140m.g Citrus clementina HOM05D001489 ORTHO05D001380 1.2e-06 56.2 38 52.6
Duzib251G0632 Durio zibethinus HOM05D001489 ORTHO05D001380 1.2e-06 56.2 74 37.8
FAN22G1571 Fragaria x ananassa HOM05D001489 ORTHO05D001380 1.2e-06 56.2 41 58.5
Phvul.001G257300 Phaseolus vulgaris HOM05D001489 ORTHO05D001380 1.2e-06 56.2 72 36.1
unitig_52.g17186 Utricularia gibba HOM05D001489 ORTHO05D001380 1.2e-06 56.2 53 43.4
Ah.02g130440 Amaranthus hybridus HOM05D001489 ORTHO05D001380 1.5e-06 55.8 40 50.0
FAN12G2072 Fragaria x ananassa HOM05D001489 ORTHO05D001380 1.5e-06 55.8 40 50.0
Lalb_Chr11g0075611 Lupinus albus HOM05D001489 ORTHO05D001380 1.5e-06 55.8 74 37.8
Medtr3g086210 Medicago truncatula HOM05D001489 ORTHO05D001380 1.5e-06 55.8 74 37.8
Nitab4.5_0000935g0070 Nicotiana tabacum HOM05D001489 ORTHO05D001380 1.5e-06 55.8 74 39.2
Nitab4.5_0001031g0190 Nicotiana tabacum HOM05D001489 ORTHO05D001380 1.5e-06 55.8 74 39.2
Phvul.001G257400 Phaseolus vulgaris HOM05D001489 ORTHO05D001380 1.5e-06 55.8 47 46.8
TAR622G1276 Trochodendron aralioides HOM05D001489 ORTHO05D001380 1.5e-06 55.8 74 36.5
arahy.Tifrunner.gnm1.ann1.0GWZ16 Arachis hypogaea HOM05D001489 ORTHO05D001380 2.0e-06 55.5 74 36.5
arahy.Tifrunner.gnm1.ann1.KTR7HF Arachis hypogaea HOM05D001489 ORTHO05D001380 2.0e-06 55.5 74 36.5
MSTRG.24055 Avicennia marina HOM05D001489 ORTHO05D001380 2.0e-06 55.5 74 37.8
MSTRG.3274 Avicennia marina HOM05D001489 ORTHO05D001380 2.0e-06 55.5 74 37.8
Oeu023833.1 Olea europaea HOM05D001489 ORTHO05D001380 2.0e-06 55.5 74 37.8
Peaxi162Scf00420g00236 Petunia axillaris HOM05D001489 ORTHO05D001380 2.0e-06 55.5 74 37.8
Prupe.1G239300 Prunus persica HOM05D001489 ORTHO05D001380 2.0e-06 55.5 74 36.5
TPR.G14241 Trifolium pratense HOM05D001489 ORTHO05D001380 2.0e-06 55.5 74 37.8
vmacro01102 Vaccinium macrocarpon HOM05D001489 ORTHO05D001380 2.0e-06 55.5 56 46.4
EL10As2g23211 Beta vulgaris HOM05D001489 ORTHO05D001380 2.6e-06 55.1 40 52.5
DCAR_012110 Daucus carota HOM05D001489 ORTHO05D001380 2.6e-06 55.1 49 46.9
MBI08_g23499_MAGBIO Magnolia biondii HOM05D001489 ORTHO05D001380 2.6e-06 55.1 40 50.0
Psat5g093240 Pisum sativum HOM05D001489 ORTHO05D001380 2.6e-06 55.1 74 37.8
SalBow2G0188 Salvia bowleyana HOM05D001489 ORTHO05D001380 2.6e-06 55.1 44 47.7
VMungo1383G1156 Vigna mungo HOM05D001489 ORTHO05D001380 2.6e-06 55.1 47 46.8
VMungo1383G2735 Vigna mungo HOM05D001489 ORTHO05D001380 2.6e-06 55.1 72 34.7
Dinv25707 Davidia involucrata HOM05D001489 ORTHO05D001380 3.4e-06 54.7 74 36.5
Duzib268G0765 Durio zibethinus HOM05D001489 ORTHO05D001380 3.4e-06 54.7 74 36.5
Hma1.2p1_0079F.1_g041350 Hydrangea macrophylla HOM05D001489 ORTHO05D001380 3.4e-06 54.7 74 37.8
Hund06052 Selenicereus undatus HOM05D001489 ORTHO05D001380 3.4e-06 54.7 52 38.5
FAN12G2987 Fragaria x ananassa HOM05D001489 ORTHO05D001380 4.5e-06 54.3 44 45.5
Lalb_Chr07g0185591 Lupinus albus HOM05D001489 ORTHO05D001380 4.5e-06 54.3 70 40.0
Manes.13G019000 Manihot esculenta HOM05D001489 ORTHO05D001380 4.5e-06 54.3 74 36.5
Rhsim05G0107400 Rhododendron simsii HOM05D001489 ORTHO05D001380 4.5e-06 54.3 74 36.5
Actinidia05954 Actinidia chinensis HOM05D001489 ORTHO05D001380 5.9e-06 53.9 57 38.6
Aqoxy5G03613 Aquilegia oxysepala HOM05D001489 ORTHO05D001380 5.9e-06 53.9 74 36.5
CiPaw.06G064000 Carya illinoinensis HOM05D001489 ORTHO05D001380 5.9e-06 53.9 49 51.0
Cc07_g00250 Coffea canephora HOM05D001489 ORTHO05D001380 5.9e-06 53.9 74 36.5
Glyma.11G245600 Glycine max HOM05D001489 ORTHO05D001380 5.9e-06 53.9 72 33.3
Glyma.18G011600 Glycine max HOM05D001489 ORTHO05D001380 5.9e-06 53.9 72 33.3
Hma1.2p1_0279F.1_g112090 Hydrangea macrophylla HOM05D001489 ORTHO05D001380 5.9e-06 53.9 74 36.5
Lsat_1_v5_gn_0_26780 Lactuca sativa HOM05D001489 ORTHO05D001380 5.9e-06 53.9 74 33.8
vmacro01105 Vaccinium macrocarpon HOM05D001489 ORTHO05D001380 5.9e-06 53.9 51 49.0
Haze_12306 Corylus avellana HOM05D001489 ORTHO05D001380 7.7e-06 53.5 74 39.2
Gohir.D02G154900 Gossypium hirsutum HOM05D001489 ORTHO05D001380 7.7e-06 53.5 44 45.5
Lj6A818G46 Lonicera japonica HOM05D001489 ORTHO05D001380 7.7e-06 53.5 39 53.8
MBI11_g19487_MAGBIO Magnolia biondii HOM05D001489 ORTHO05D001380 7.7e-06 53.5 74 36.5
HPP92_024534 Vanilla planifolia HOM05D001489 ORTHO05D001380 7.7e-06 53.5 52 38.5


User provided reference genes

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