Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-142 509.6 253 100.0
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.3e-137 492.3 253 96.4
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.2e-135 484.2 252 94.8
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 1.2e-114 416.8 253 80.2
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 1.2e-114 416.8 253 79.4
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 6.0e-114 414.5 253 79.8
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 1.3e-113 413.3 253 77.9
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 2.3e-113 412.5 253 77.9
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 3.9e-113 411.8 253 77.9
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 8.7e-113 410.6 253 78.3
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.1e-112 410.2 255 78.8
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 3.3e-112 408.7 253 77.5
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 9.6e-112 407.1 253 77.1
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 2.1e-111 406.0 253 77.1
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 2.8e-111 405.6 253 75.9
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 3.7e-111 405.2 253 76.7
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 3.7e-111 405.2 253 77.1
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 4.8e-111 404.8 253 76.7
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 4.8e-111 404.8 253 76.7
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 6.2e-111 404.4 253 76.7
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.8e-110 402.9 253 76.7
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 3.1e-110 402.1 253 76.7
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 3.1e-110 402.1 253 76.7
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 4.0e-110 401.7 253 77.1
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 9.0e-110 400.6 253 76.3
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.2e-109 400.2 253 76.7
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 1.2e-109 400.2 253 76.3
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 1.5e-109 399.8 253 76.3
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 2.0e-109 399.4 254 76.0
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 2.6e-109 399.1 253 76.3
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 3.4e-109 398.7 253 75.1
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 5.8e-109 397.9 253 73.9
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 7.6e-109 397.5 253 73.5
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 7.6e-109 397.5 253 75.9
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 1.3e-108 396.7 253 75.1
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 1.7e-108 396.4 253 75.1
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 2.2e-108 396.0 252 75.0
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 2.9e-108 395.6 252 75.0
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 3.8e-108 395.2 254 74.4
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 4.9e-108 394.8 253 74.3
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 6.4e-108 394.4 253 74.3
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.1e-107 393.7 253 72.7
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.9e-107 392.9 253 74.3
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 1.9e-107 392.9 253 74.3
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 4.2e-107 391.7 254 74.4
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 7.1e-107 391.0 253 72.7
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 7.1e-107 391.0 252 73.8
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 9.3e-107 390.6 253 72.3
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 9.3e-107 390.6 253 73.5
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.2e-106 390.2 253 73.9
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.6e-106 389.8 254 74.8
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 2.7e-106 389.0 254 74.4
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 2.7e-106 389.0 253 73.5
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 4.6e-106 388.3 253 71.9
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 4.6e-106 388.3 253 71.9
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 6.0e-106 387.9 255 73.3
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 6.0e-106 387.9 252 73.4
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 1.0e-105 387.1 253 73.5
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 1.0e-105 387.1 253 73.5
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 1.0e-105 387.1 253 73.1
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 1.3e-105 386.7 253 73.1
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.8e-105 386.3 253 73.1
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.8e-105 386.3 253 73.5
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 3.0e-105 385.6 254 72.0
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 3.9e-105 385.2 253 70.4
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 3.9e-105 385.2 253 72.3
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 6.7e-105 384.4 255 72.9
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 6.7e-105 384.4 253 73.1
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 6.7e-105 384.4 253 73.1
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 8.7e-105 384.0 254 74.8
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 1.9e-104 382.9 253 70.8
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 1.9e-104 382.9 253 70.8
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 3.3e-104 382.1 253 71.9
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 4.3e-104 381.7 253 75.1
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 5.6e-104 381.3 253 69.6
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.3e-103 380.2 254 72.8
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.6e-103 379.8 254 72.4
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.2e-103 377.9 218 86.7
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 6.2e-103 377.9 252 69.4
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.8e-102 376.3 248 80.2
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 3.1e-102 375.6 253 71.5
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 5.3e-102 374.8 253 70.4
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.5e-101 373.2 278 64.7
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 7.6e-101 370.9 253 70.0
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 2.2e-100 369.4 269 65.8
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 6.5e-100 367.9 255 70.6
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 8.4e-100 367.5 253 69.2
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.5e-99 365.9 253 71.9
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 2.5e-99 365.9 254 70.9
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 5.5e-99 364.8 261 69.0
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 3.3e-96 355.5 256 69.1
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 3.1e-94 349.0 219 75.3
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.0e-93 346.3 212 79.2
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.6e-93 345.9 257 65.4
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.6e-93 345.9 257 65.4
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.9e-91 339.7 253 66.0
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 5.1e-89 331.6 243 65.4
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 2.2e-87 326.2 275 61.1
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 4.8e-87 325.1 254 61.0
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 1.0e-84 317.4 254 59.4
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 5.7e-80 301.6 253 60.1
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 1.0e-76 290.8 235 63.4
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 6.5e-76 288.1 218 65.1
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 7.9e-74 281.2 254 55.1
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.4e-73 280.4 169 77.5
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 3.0e-73 279.3 254 54.7
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.4e-70 270.4 254 51.6
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 3.1e-70 269.2 163 74.2
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 4.5e-69 265.4 254 52.4
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 1.0e-68 264.2 258 52.7
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 8.5e-68 261.2 260 50.4
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 7.2e-67 258.1 184 65.8
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 9.4e-59 231.1 143 75.5
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.8e-55 218.8 253 53.8
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.9e-53 211.8 253 51.8
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 3.0e-49 199.5 234 50.4
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 3.0e-49 199.5 142 64.8
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.3e-36 157.5 176 45.5
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 1.8e-33 147.1 216 44.0
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 9.8e-32 141.4 93 68.8
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 5.4e-30 135.6 122 57.4
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.3e-28 131.0 125 56.8
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 4.4e-24 115.9 134 51.5
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 1.1e-22 111.3 273 30.0
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 1.4e-22 110.9 64 73.4
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 3.5e-21 106.3 97 59.8
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 4.0e-17 92.8 161 34.2
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.6e-13 80.9 73 60.3


User provided reference genes

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