Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.2e-81 304.3 151 100.0
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.2e-29 133.7 127 58.3
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.1e-29 131.3 125 56.8
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.4e-28 130.2 125 56.8
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.1e-27 127.1 113 56.6
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 2.6e-27 125.9 113 55.8
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 6.3e-26 121.3 125 52.0
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 6.3e-26 121.3 126 50.8
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 8.2e-26 120.9 125 52.0
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 8.2e-26 120.9 130 55.4
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 1.1e-25 120.6 127 52.0
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 1.1e-25 120.6 125 52.0
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 1.4e-25 120.2 128 50.8
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 1.8e-25 119.8 128 50.0
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 1.8e-25 119.8 125 51.2
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 2.4e-25 119.4 122 50.8
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 3.1e-25 119.0 125 50.4
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 4.1e-25 118.6 125 50.4
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 4.1e-25 118.6 125 51.2
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 4.1e-25 118.6 128 50.0
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 4.1e-25 118.6 125 50.4
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 5.3e-25 118.2 125 51.2
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.9e-25 117.9 117 54.7
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 6.9e-25 117.9 125 49.6
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 6.9e-25 117.9 128 50.0
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 9.1e-25 117.5 128 50.0
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 9.1e-25 117.5 125 49.6
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.2e-24 117.1 125 50.4
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.2e-24 117.1 125 50.4
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 1.2e-24 117.1 125 49.6
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 1.5e-24 116.7 126 50.0
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 1.5e-24 116.7 128 49.2
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 1.5e-24 116.7 125 50.4
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 1.5e-24 116.7 125 51.2
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 1.5e-24 116.7 125 49.6
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 2.0e-24 116.3 128 50.8
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 2.0e-24 116.3 125 49.6
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 2.0e-24 116.3 125 49.6
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 2.6e-24 115.9 125 49.6
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.6e-24 115.9 125 50.4
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 3.4e-24 115.5 125 48.8
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 3.4e-24 115.5 125 49.6
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 3.4e-24 115.5 117 58.1
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 4.5e-24 115.2 125 48.8
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 4.5e-24 115.2 125 48.8
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 5.9e-24 114.8 122 50.0
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 5.9e-24 114.8 125 48.8
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 5.9e-24 114.8 125 50.4
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 7.7e-24 114.4 125 48.0
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 7.7e-24 114.4 125 48.8
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 7.7e-24 114.4 126 49.2
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.0e-23 114.0 126 50.8
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.0e-23 114.0 128 48.4
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 1.0e-23 114.0 125 48.0
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.0e-23 114.0 127 48.0
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.0e-23 114.0 125 48.8
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 1.3e-23 113.6 125 48.0
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 1.3e-23 113.6 125 47.2
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.3e-23 113.6 125 48.0
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.3e-23 113.6 125 48.0
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 1.3e-23 113.6 125 50.4
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.3e-23 113.6 126 49.2
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.7e-23 113.2 127 48.8
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 2.9e-23 112.5 132 46.2
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.8e-23 112.1 124 48.4
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 5.0e-23 111.7 125 48.0
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 5.0e-23 111.7 125 48.0
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 5.0e-23 111.7 125 48.0
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 5.0e-23 111.7 125 48.8
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 5.0e-23 111.7 125 48.8
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 8.5e-23 110.9 125 46.4
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 8.5e-23 110.9 125 46.4
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 8.5e-23 110.9 125 46.4
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 8.5e-23 110.9 125 48.0
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 8.5e-23 110.9 125 48.0
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 8.5e-23 110.9 125 48.0
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 8.5e-23 110.9 125 48.0
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 8.5e-23 110.9 126 46.8
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 8.5e-23 110.9 126 46.8
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.1e-22 110.5 125 46.4
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 1.1e-22 110.5 125 47.2
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.1e-22 110.5 125 48.0
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 1.4e-22 110.2 126 43.7
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 1.4e-22 110.2 122 46.7
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 1.9e-22 109.8 125 46.4
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 1.9e-22 109.8 126 46.8
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 1.9e-22 109.8 125 47.2
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 1.9e-22 109.8 125 48.0
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.5e-22 109.4 125 46.4
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 2.5e-22 109.4 125 46.4
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.2e-22 109.0 127 46.5
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 3.2e-22 109.0 122 46.7
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 4.2e-22 108.6 127 46.5
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 4.2e-22 108.6 125 46.4
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 4.2e-22 108.6 124 46.8
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 5.5e-22 108.2 125 45.6
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 7.2e-22 107.8 125 45.6
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 7.2e-22 107.8 125 45.6
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 1.6e-21 106.7 117 47.0
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 3.6e-21 105.5 125 44.8
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 3.6e-21 105.5 126 46.8
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 6.1e-21 104.8 127 45.7
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 7.9e-21 104.4 123 47.2
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 1.4e-20 103.6 125 44.8
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 2.6e-19 99.4 117 46.2
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 7.4e-19 97.8 127 40.9
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 6.3e-18 94.7 55 74.5
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 8.2e-18 94.4 128 43.0
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 4.1e-17 92.0 126 41.3
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 7.7e-16 87.8 151 36.4
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 6.5e-15 84.7 123 37.4
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.5e-14 83.6 123 36.6
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 4.2e-14 82.0 123 41.5
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 4.7e-13 78.6 125 39.2
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 8.0e-13 77.8 115 43.5
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 1.0e-12 77.4 134 38.8
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.3e-12 76.3 125 37.6
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.7e-07 60.1 130 36.9
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 5.0e-07 58.5 113 34.5


User provided reference genes

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