Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.9e-170 602.4 313 100.0
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.7e-139 497.7 429 66.7
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.5e-133 479.2 322 81.4
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.5e-133 478.0 423 66.4
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 2.8e-89 332.8 437 46.7
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 6.3e-89 331.6 452 46.5
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 2.9e-86 322.8 451 45.7
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 1.6e-84 317.0 436 45.9
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 6.1e-84 315.1 454 45.4
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 4.0e-83 312.4 456 43.9
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 5.2e-83 312.0 454 46.0
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 2.0e-82 310.1 446 44.2
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 4.4e-82 308.9 450 44.2
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 5.8e-82 308.5 455 46.4
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 1.1e-80 304.3 450 45.8
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 7.0e-80 301.6 449 45.4
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 2.7e-79 299.7 457 44.6
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.7e-79 299.7 443 42.9
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 1.7e-78 297.0 435 45.3
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 6.6e-78 295.0 455 42.0
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 6.6e-78 295.0 451 43.5
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 2.5e-77 293.1 425 44.5
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 7.3e-77 291.6 386 50.8
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 9.5e-77 291.2 452 42.0
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 9.5e-77 291.2 454 41.4
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.2e-76 290.8 452 41.6
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 1.6e-76 290.4 448 43.3
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 1.6e-76 290.4 452 41.6
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 2.8e-76 289.7 455 43.7
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 2.8e-76 289.7 450 41.8
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 1.1e-75 287.7 454 42.1
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 1.8e-75 287.0 461 41.4
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 3.1e-75 286.2 459 43.8
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 5.2e-75 285.4 451 41.5
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 2.0e-74 283.5 451 42.1
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 7.5e-74 281.6 477 40.3
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 7.5e-74 281.6 491 40.5
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 2.2e-73 280.0 455 42.2
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.9e-73 279.6 453 40.8
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 6.4e-73 278.5 454 41.4
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 7.0e-72 275.0 443 40.4
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 7.0e-72 275.0 453 41.7
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 9.2e-72 274.6 454 40.5
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 9.2e-72 274.6 449 40.1
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 9.2e-72 274.6 458 39.7
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 4.6e-71 272.3 452 40.9
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 7.8e-71 271.6 448 41.3
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.0e-70 271.2 448 42.2
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.7e-70 270.4 451 40.4
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 5.1e-70 268.9 441 41.0
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 6.6e-70 268.5 441 41.0
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 8.6e-70 268.1 453 41.3
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 2.5e-69 266.5 452 40.3
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 4.3e-69 265.8 478 37.9
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 5.6e-69 265.4 447 41.2
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 5.6e-69 265.4 453 41.7
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 1.2e-68 264.2 442 40.0
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.6e-68 263.8 462 39.8
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 2.1e-68 263.5 447 40.5
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 3.6e-68 262.7 454 38.5
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 1.1e-67 261.2 346 46.8
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 1.1e-67 261.2 444 40.3
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 1.8e-67 260.4 452 39.6
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.8e-67 260.4 449 40.3
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 2.3e-67 260.0 444 40.5
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 8.9e-67 258.1 435 41.1
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 2.0e-66 256.9 447 40.3
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 2.0e-66 256.9 444 39.6
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 2.6e-66 256.5 451 39.7
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 1.3e-65 254.2 453 39.1
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 1.3e-65 254.2 398 42.2
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.7e-65 253.8 450 38.2
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 2.9e-65 253.1 387 42.4
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 6.4e-65 251.9 442 38.5
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 1.4e-64 250.8 410 40.2
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 1.9e-64 250.4 469 38.8
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.9e-64 250.4 382 41.9
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 1.9e-64 250.4 444 40.8
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 2.4e-64 250.0 395 41.5
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 9.2e-64 248.1 335 46.0
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 2.7e-63 246.5 332 45.2
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 3.5e-63 246.1 479 38.6
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 7.8e-63 245.0 436 37.8
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 3.0e-62 243.0 497 37.4
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 1.5e-61 240.7 368 42.1
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 4.3e-61 239.2 448 37.7
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.2e-60 237.7 333 43.8
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.6e-60 237.3 460 39.3
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 9.9e-58 228.0 317 44.8
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 9.2e-56 221.5 373 41.8
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 7.8e-55 218.4 350 41.7
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 7.8e-55 218.4 253 53.8
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 1.8e-51 207.2 464 36.4
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 6.9e-51 205.3 453 35.5
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 9.0e-51 204.9 447 34.9
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 2.0e-50 203.8 302 41.4
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 9.9e-50 201.4 334 40.7
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 1.6e-47 194.1 459 33.6
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 8.7e-46 188.3 354 35.3
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 2.4e-43 180.3 233 50.6
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 1.4e-40 171.0 255 40.8
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 7.9e-39 165.2 391 30.7
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.8e-38 164.1 255 38.8
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.3e-38 163.7 326 32.8
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 5.1e-38 162.5 232 48.7
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 1.9e-37 160.6 388 30.2
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 3.7e-36 156.4 117 62.4
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 4.8e-36 156.0 399 32.3
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 2.6e-34 150.2 457 29.1
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 3.4e-34 149.8 357 30.5
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 8.4e-33 145.2 354 34.2
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 7.1e-32 142.1 207 44.9
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 1.8e-30 137.5 128 57.0
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 5.1e-30 136.0 112 58.9
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 2.1e-28 130.6 327 28.4
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.7e-28 129.8 240 42.9
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 8.2e-28 128.6 196 43.9
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 7.1e-24 115.5 75 70.7
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 4.8e-20 102.8 198 35.9
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.4e-19 100.5 197 40.6
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 2.6e-18 97.1 138 49.3
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 8.5e-17 92.0 107 47.7
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 9.1e-11 72.0 98 38.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 6.1e-07 59.3 32 81.2


User provided reference genes

Program Settings