Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04542 Eucalyptus grandis HOM05D002994 ORTHO05D003337 5.1e-52 207.6 115 100.0
Eucgr.H04156 Eucalyptus grandis HOM05D002994 ORTHO05D003337 4.1e-25 118.2 137 58.4
CiPaw.09G139200 Carya illinoinensis HOM05D002994 ORTHO05D003337 1.2e-24 116.7 137 55.5
QL02p017328 Quercus lobata HOM05D002994 ORTHO05D003337 4.5e-24 114.8 137 56.2
QL05p081668 Quercus lobata HOM05D002994 ORTHO05D003337 4.5e-24 114.8 137 55.5
Gohir.A08G218300 Gossypium hirsutum HOM05D002994 ORTHO05D003337 1.3e-23 113.2 132 56.1
Gorai.004G250100 Gossypium raimondii HOM05D002994 ORTHO05D003337 1.3e-23 113.2 137 54.7
Migut.F02068 Erythranthe guttata HOM05D002994 ORTHO05D003337 1.7e-23 112.8 139 54.7
MSTRG.9226 Avicennia marina HOM05D002994 ORTHO05D003337 6.5e-23 110.9 139 54.0
Atru.chr2.1245 Acer truncatum HOM05D002994 ORTHO05D003337 1.9e-22 109.4 137 54.7
Duzib177G0745 Durio zibethinus HOM05D002994 ORTHO05D003337 1.9e-22 109.4 136 53.7
Sabra19G0037200 Salix brachista HOM05D002994 ORTHO05D003337 2.5e-22 109.0 137 54.7
Sabra19G0039700 Salix brachista HOM05D002994 ORTHO05D003337 2.5e-22 109.0 137 54.7
Ciclev10021599m.g Citrus clementina HOM05D002994 ORTHO05D003337 7.2e-22 107.5 137 54.7
Gohir.D08G235500 Gossypium hirsutum HOM05D002994 ORTHO05D003337 7.2e-22 107.5 137 53.3
Thecc.05G260600 Theobroma cacao HOM05D002994 ORTHO05D003337 9.3e-22 107.1 139 54.0
Dinv03229 Davidia involucrata HOM05D002994 ORTHO05D003337 1.2e-21 106.7 137 54.0
RcHm_v2.0_Chr6g0288361 Rosa chinensis HOM05D002994 ORTHO05D003337 1.2e-21 106.7 137 53.3
Gohir.D11G250500 Gossypium hirsutum HOM05D002994 ORTHO05D003337 1.6e-21 106.3 137 52.6
Gorai.007G268600 Gossypium raimondii HOM05D002994 ORTHO05D003337 1.6e-21 106.3 137 52.6
Potri.013G052700 Populus trichocarpa HOM05D002994 ORTHO05D003337 2.1e-21 105.9 137 52.6
FAN27G0312 Fragaria x ananassa HOM05D002994 ORTHO05D003337 4.6e-21 104.8 138 51.4
MD10G1185200 Malus domestica HOM05D002994 ORTHO05D003337 4.6e-21 104.8 137 51.1
CSS0027841 Camellia sinensis var. sinensis HOM05D002994 ORTHO05D003337 6.1e-21 104.4 137 53.3
Eucgr.L02757 Eucalyptus grandis HOM05D002994 ORTHO05D003337 6.1e-21 104.4 78 79.5
ClCG07G000990 Citrullus lanatus HOM05D002994 ORTHO05D003337 7.9e-21 104.0 128 55.5
Duzib128G2066 Durio zibethinus HOM05D002994 ORTHO05D003337 1.0e-20 103.6 137 53.3
FvH4_2g21680 Fragaria vesca HOM05D002994 ORTHO05D003337 1.0e-20 103.6 138 51.4
FAN24G2383 Fragaria x ananassa HOM05D002994 ORTHO05D003337 1.0e-20 103.6 138 51.4
Oeu007687.2 Olea europaea HOM05D002994 ORTHO05D003337 2.3e-20 102.4 134 53.7
TWI34G0844 Tripterygium wilfordii HOM05D002994 ORTHO05D003337 2.3e-20 102.4 137 51.1
FAN15G1600 Fragaria x ananassa HOM05D002994 ORTHO05D003337 3.0e-20 102.1 138 50.7
Potri.019G030400 Populus trichocarpa HOM05D002994 ORTHO05D003337 3.0e-20 102.1 138 52.9
Cpa.g.sc51.69 Carica papaya HOM05D002994 ORTHO05D003337 5.1e-20 101.3 137 51.8
Lj2C51T6 Lonicera japonica HOM05D002994 ORTHO05D003337 5.1e-20 101.3 137 53.3
Haze_05231 Corylus avellana HOM05D002994 ORTHO05D003337 1.1e-19 100.1 164 46.3
PGR004G1910 Punica granatum HOM05D002994 ORTHO05D003337 1.5e-19 99.8 139 51.1
Ca_18953_v3 Cicer arietinum L. HOM05D002994 ORTHO05D003337 1.9e-19 99.4 130 54.6
MELO3C012902.2 Cucumis melo HOM05D002994 ORTHO05D003337 2.5e-19 99.0 137 51.8
GSVIVG01026377001 Vitis vinifera HOM05D002994 ORTHO05D003337 3.3e-19 98.6 139 51.1
Cc09_g03220 Coffea canephora HOM05D002994 ORTHO05D003337 4.3e-19 98.2 137 48.2
Manes.09G144700 Manihot esculenta HOM05D002994 ORTHO05D003337 4.3e-19 98.2 137 50.4
Prupe.8G225000 Prunus persica HOM05D002994 ORTHO05D003337 4.3e-19 98.2 137 49.6
TPR.G19622 Trifolium pratense HOM05D002994 ORTHO05D003337 4.3e-19 98.2 130 52.3
vmacro11037 Vaccinium macrocarpon HOM05D002994 ORTHO05D003337 4.3e-19 98.2 140 50.7
CsaV3_3G022500 Cucumis sativus L. HOM05D002994 ORTHO05D003337 9.7e-19 97.1 137 51.1
Nitab4.5_0000344g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 9.7e-19 97.1 134 52.2
PSO017G4550 Papaver somniferum HOM05D002994 ORTHO05D003337 9.7e-19 97.1 137 50.4
Aqoxy2G04007 Aquilegia oxysepala HOM05D002994 ORTHO05D003337 1.3e-18 96.7 137 50.4
Sopen04g022430 Solanum pennellii HOM05D002994 ORTHO05D003337 1.3e-18 96.7 134 50.7
Medtr4g078130 Medicago truncatula HOM05D002994 ORTHO05D003337 1.6e-18 96.3 130 52.3
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 2.2e-18 95.9 131 53.4
PSO063G0038 Papaver somniferum HOM05D002994 ORTHO05D003337 2.2e-18 95.9 136 50.0
Prupe.1G354200 Prunus persica HOM05D002994 ORTHO05D003337 3.7e-18 95.1 139 48.9
Glyma.11G108700 Glycine max HOM05D002994 ORTHO05D003337 4.8e-18 94.7 101 61.4
Solyc04g051120.4 Solanum lycopersicum HOM05D002994 ORTHO05D003337 6.3e-18 94.4 129 51.9
Phvul.011G018900 Phaseolus vulgaris HOM05D002994 ORTHO05D003337 8.2e-18 94.0 101 60.4
ATR0561G058 Amborella trichopoda HOM05D002994 ORTHO05D003337 1.1e-17 93.6 131 49.6
Lj3g0016982 Lotus japonicus HOM05D002994 ORTHO05D003337 1.1e-17 93.6 130 51.5
Peaxi162Scf00215g00114 Petunia axillaris HOM05D002994 ORTHO05D003337 1.1e-17 93.6 130 50.8
HPP92_021426 Vanilla planifolia HOM05D002994 ORTHO05D003337 1.1e-17 93.6 105 57.1
Lalb_Chr03g0024371 Lupinus albus HOM05D002994 ORTHO05D003337 1.4e-17 93.2 101 59.4
Sed0012175 Sechium edule HOM05D002994 ORTHO05D003337 2.4e-17 92.4 137 47.4
Sp1g07190 Schrenkiella parvula HOM05D002994 ORTHO05D003337 3.1e-17 92.0 127 52.0
Carub.0001s0789 Capsella rubella HOM05D002994 ORTHO05D003337 6.9e-17 90.9 101 58.4
Nitab4.5_0003944g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 6.9e-17 90.9 144 47.2
MSTRG.27426 Avicennia marina HOM05D002994 ORTHO05D003337 9.0e-17 90.5 136 47.8
AL1G18960 Arabidopsis lyrata HOM05D002994 ORTHO05D003337 1.2e-16 90.1 101 58.4
C05p06630 Brassica napus HOM05D002994 ORTHO05D003337 1.2e-16 90.1 101 58.4
AT1G08530 Arabidopsis thaliana HOM05D002994 ORTHO05D003337 1.5e-16 89.7 101 58.4
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 2.6e-16 89.0 131 51.9
BcaB07g34096 Brassica carinata HOM05D002994 ORTHO05D003337 3.4e-16 88.6 101 57.4
BolC5t29423H Brassica oleracea HOM05D002994 ORTHO05D003337 3.4e-16 88.6 101 57.4
BraA06t23760Z Brassica rapa HOM05D002994 ORTHO05D003337 3.4e-16 88.6 101 57.4
CARHR008430 Cardamine hirsuta HOM05D002994 ORTHO05D003337 3.4e-16 88.6 101 56.4
Thhalv10008466m.g Eutrema salsugineum HOM05D002994 ORTHO05D003337 4.5e-16 88.2 127 49.6
Lsat_1_v5_gn_8_3301 Lactuca sativa HOM05D002994 ORTHO05D003337 4.5e-16 88.2 115 53.0
TAR633G1434 Trochodendron aralioides HOM05D002994 ORTHO05D003337 4.5e-16 88.2 95 61.1
A06p05520 Brassica napus HOM05D002994 ORTHO05D003337 5.9e-16 87.8 101 57.4
CANSAT01G0680 Cannabis sativa HOM05D002994 ORTHO05D003337 1.7e-15 86.3 101 58.4
ECA233G1668 Erigeron canadensis HOM05D002994 ORTHO05D003337 1.7e-15 86.3 142 45.8
Actinidia29397 Actinidia chinensis HOM05D002994 ORTHO05D003337 2.2e-15 85.9 137 47.4
AUR62000658 Chenopodium quinoa HOM05D002994 ORTHO05D003337 3.8e-15 85.1 127 47.2
COL.COLO4_20548 Corchorus olitorius HOM05D002861 ORTHO05D003104 3.8e-15 85.1 120 50.8
HanXRQChr05g0139071 Helianthus annuus HOM05D002994 ORTHO05D003337 6.5e-15 84.3 101 54.5
Sc09g0001740 Simmondsia chinensis HOM05D002994 ORTHO05D003337 8.5e-15 84.0 101 56.4
Nn1g07964 Nelumbo nucifera HOM05D002994 ORTHO05D003337 1.4e-14 83.2 137 46.7
unitig_736.g22503 Utricularia gibba HOM05D002994 ORTHO05D003337 1.4e-14 83.2 73 65.8
Psat7g170080 Pisum sativum HOM05D002994 ORTHO05D003337 4.2e-14 81.6 129 45.7
Aa31sc1107G10 Aethionema arabicum HOM05D002994 ORTHO05D003337 5.5e-14 81.3 127 45.7
THA.LOC104821131 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 5.5e-14 81.3 70 70.0
Hund07151 Selenicereus undatus HOM05D002994 ORTHO05D003337 9.4e-14 80.5 101 52.5
EL10Ac4g09801 Beta vulgaris HOM05D002994 ORTHO05D003337 1.0e-12 77.0 101 49.5
SEGI_02150 Sequoiadendron giganteum HOM05D002994 ORTHO05D003337 1.8e-12 76.3 102 48.0
Mapoly0132s0020 Marchantia polymorpha HOM05D002994 ORTHO05D003337 2.3e-12 75.9 111 41.4
AagrBONN_evm.TU.Sc2ySwM_117.294 Anthoceros agrestis HOM05D002994 ORTHO05D003337 4.3e-11 71.6 102 44.1
SalBow1G2572 Salvia bowleyana HOM05D002994 ORTHO05D003337 7.4e-11 70.9 120 44.2
Pp3c21_1120 Physcomitrium patens HOM05D002994 ORTHO05D003337 9.7e-11 70.5 110 43.6
Rhsim02G0173800 Rhododendron simsii HOM05D002994 ORTHO05D003337 9.7e-11 70.5 109 45.0
Pp3c19_6090 Physcomitrium patens HOM05D002994 ORTHO05D003337 2.8e-10 68.9 110 45.5
CBR_g41090 Chara braunii HOM05D002994 ORTHO05D003337 4.8e-10 68.2 113 40.7
Gohir.A11G241100 Gossypium hirsutum HOM05D002994 ORTHO05D003337 1.4e-09 66.6 59 69.5
TAR633G0952 Trochodendron aralioides HOM05D002994 ORTHO05D003337 1.4e-09 66.6 96 44.8
VMungo1127G1567 Vigna mungo HOM05D002994 ORTHO05D003337 1.4e-09 66.6 90 48.9
SGA_v2.0_scaffold62G21477 Striga asiatica HOM05D002994 ORTHO05D003337 1.8e-09 66.2 110 46.4
PGSC0003DMG401023121 Solanum tuberosum HOM05D002994 ORTHO05D003337 1.2e-08 63.5 91 47.3
Os12g0430900 Oryza sativa ssp. japonica HOM05D002994 ORTHO05D003337 2.6e-08 62.4 117 41.9
MD05G1199200 Malus domestica HOM05D002994 ORTHO05D003337 7.7e-08 60.8 97 44.3
Pp3c18_21490 Physcomitrium patens HOM05D002994 ORTHO05D003337 7.7e-08 60.8 70 52.9
Eucgr.I00329 Eucalyptus grandis HOM05D002994 ORTHO05D003337 1.3e-07 60.1 78 48.7
Medtr3g094780 Medicago truncatula HOM05D002994 ORTHO05D003337 1.7e-07 59.7 108 41.7
AUR62003311 Chenopodium quinoa HOM05D002994 ORTHO05D003337 3.8e-07 58.5 110 37.3
DCAR_011447 Daucus carota HOM05D002994 ORTHO05D003337 3.8e-07 58.5 89 44.9
TWI74G0568 Tripterygium wilfordii HOM05D002994 ORTHO05D003337 3.8e-07 58.5 82 47.6
QL06p031359 Quercus lobata HOM05D002994 ORTHO05D003337 5.0e-07 58.2 96 39.6
Lalb_Chr08g0238901 Lupinus albus HOM05D002994 ORTHO05D003337 8.5e-07 57.4 67 53.7
PGR004G2214 Punica granatum HOM05D002994 ORTHO05D003337 8.5e-07 57.4 75 48.0
PGSC0003DMG402023121 Solanum tuberosum HOM05D002994 ORTHO05D003337 8.5e-07 57.4 40 80.0
TPR.G23722 Trifolium pratense HOM05D002994 ORTHO05D003337 8.5e-07 57.4 68 52.9
AagrBONN_evm.TU.Sc2ySwM_368.1660 Anthoceros agrestis HOM05D002994 ORTHO05D003337 1.1e-06 57.0 110 40.0
Mapoly0067s0012 Marchantia polymorpha HOM05D002994 ORTHO05D003337 1.1e-06 57.0 71 50.7
Sc16g0004180 Simmondsia chinensis HOM05D002994 ORTHO05D003337 1.4e-06 56.6 109 40.4
Cc07_g16080 Coffea canephora HOM05D002994 ORTHO05D003337 2.5e-06 55.8 86 43.0
TPR.G127 Trifolium pratense HOM05D002994 ORTHO05D003337 2.5e-06 55.8 69 50.7
Cfa021165 Carpinus fangiana HOM05D002994 ORTHO05D003337 3.2e-06 55.5 44 75.0
Nitab4.5_0000818g0060 Nicotiana tabacum HOM05D002994 ORTHO05D003337 3.2e-06 55.5 108 37.0
C09p67570 Brassica napus HOM05D002994 ORTHO05D003337 4.2e-06 55.1 111 37.8
CARHR203320 Cardamine hirsuta HOM05D002994 ORTHO05D003337 4.2e-06 55.1 73 45.2
Ca_16890_v3 Cicer arietinum L. HOM05D002994 ORTHO05D003337 4.2e-06 55.1 69 50.7
Thhalv10014442m.g Eutrema salsugineum HOM05D002994 ORTHO05D003337 4.2e-06 55.1 109 38.5
TAR381G0007 Trochodendron aralioides HOM05D002994 ORTHO05D003337 4.2e-06 55.1 82 45.1
HPP92_027146 Vanilla planifolia HOM05D002994 ORTHO05D003337 4.2e-06 55.1 80 46.2
EL10Ac6g14747 Beta vulgaris HOM05D002994 ORTHO05D003337 5.5e-06 54.7 71 46.5
HanXRQChr09g0254781 Helianthus annuus HOM05D002994 ORTHO05D003337 5.5e-06 54.7 88 44.3
Peaxi162Scf00167g00017 Petunia axillaris HOM05D002994 ORTHO05D003337 5.5e-06 54.7 71 46.5
Sopen05g030240 Solanum pennellii HOM05D002994 ORTHO05D003337 5.5e-06 54.7 72 45.8
PGSC0003DMG400030098 Solanum tuberosum HOM05D002994 ORTHO05D003337 5.5e-06 54.7 72 45.8
Aa31LG3G17140 Aethionema arabicum HOM05D002994 ORTHO05D003337 7.2e-06 54.3 80 45.0
CsaV3_6G042440 Cucumis sativus L. HOM05D002994 ORTHO05D003337 7.2e-06 54.3 111 36.9
Nitab4.5_0004246g0050 Nicotiana tabacum HOM05D002994 ORTHO05D003337 7.2e-06 54.3 71 46.5
Solyc05g051770.3 Solanum lycopersicum HOM05D002994 ORTHO05D003337 7.2e-06 54.3 71 46.5
THA.LOC104818479 Tarenaya hassleriana HOM05D002994 ORTHO05D003337 7.2e-06 54.3 111 36.9
AUR62016272 Chenopodium quinoa HOM05D002994 ORTHO05D003337 9.4e-06 53.9 109 35.8
Sp6g33410 Schrenkiella parvula HOM05D002994 ORTHO05D003337 9.4e-06 53.9 109 37.6
unitig_899.g14601 Utricularia gibba HOM05D002994 ORTHO05D003337 9.4e-06 53.9 71 47.9


User provided reference genes

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