Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 5.8e-247 857.1 416 100.0
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.8e-132 476.1 270 84.4
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 6.0e-127 458.4 267 79.8
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.0e-126 457.6 267 80.5
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 6.6e-126 454.9 271 78.6
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 5.6e-125 451.8 266 79.3
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 7.3e-125 451.4 266 80.1
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 7.3e-125 451.4 271 78.6
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.7e-124 448.7 271 77.1
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 8.1e-124 448.0 271 78.6
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 1.8e-123 446.8 261 78.5
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 6.8e-123 444.9 271 76.0
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.2e-122 444.1 273 76.9
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 2.0e-122 443.4 269 75.5
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 2.6e-122 443.0 267 77.5
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 4.4e-122 442.2 271 76.4
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 7.6e-122 441.4 271 76.4
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 9.9e-122 441.0 271 76.4
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.3e-121 440.7 271 76.4
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.1e-120 437.6 271 75.6
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.1e-120 437.6 267 76.0
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 1.9e-120 436.8 271 75.6
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.6e-119 433.7 266 75.9
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 1.6e-119 433.7 271 75.6
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.7e-119 433.0 272 74.3
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 3.5e-119 432.6 271 74.5
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 4.6e-119 432.2 274 75.5
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 7.8e-119 431.4 269 76.2
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.0e-118 431.0 269 75.8
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 1.3e-118 430.6 271 74.2
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 1.3e-118 430.6 271 75.6
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 1.3e-118 430.6 271 76.4
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.7e-118 430.3 272 73.9
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 2.3e-118 429.9 267 76.4
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 3.9e-118 429.1 285 72.3
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 5.1e-118 428.7 265 75.5
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 6.6e-118 428.3 271 72.3
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 2.5e-117 426.4 271 73.1
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 4.3e-117 425.6 271 73.8
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 5.6e-117 425.2 271 73.8
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 1.2e-116 424.1 271 72.3
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.6e-116 423.7 271 73.8
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 2.1e-116 423.3 271 73.8
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 4.7e-116 422.2 271 72.0
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 6.2e-116 421.8 272 71.3
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 8.1e-116 421.4 272 72.8
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.4e-115 420.6 271 72.3
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 1.4e-115 420.6 271 71.2
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 3.1e-115 419.5 273 72.9
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 4.0e-115 419.1 271 73.8
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 6.9e-115 418.3 269 72.1
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 1.5e-114 417.2 273 72.5
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.0e-114 416.8 271 71.6
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.0e-114 416.8 271 70.1
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 9.9e-114 414.5 271 73.8
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 1.3e-113 414.1 262 71.4
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 2.2e-113 413.3 271 71.2
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 4.9e-113 412.1 268 70.9
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 8.4e-113 411.4 271 69.4
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 1.1e-112 411.0 267 69.3
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 1.4e-112 410.6 269 69.1
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 5.4e-112 408.7 275 68.4
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 9.3e-112 407.9 275 68.4
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 1.2e-111 407.5 259 74.9
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 2.1e-111 406.8 267 68.5
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.7e-111 406.4 269 66.9
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 4.6e-111 405.6 269 70.3
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.0e-110 404.4 274 67.2
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 1.3e-110 404.1 347 58.2
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.7e-110 403.7 271 72.0
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 2.3e-110 403.3 275 67.6
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 5.1e-110 402.1 269 67.3
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 5.1e-110 402.1 274 68.2
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 5.1e-110 402.1 295 66.1
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 1.1e-109 401.0 272 69.1
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.5e-109 400.6 269 67.3
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 1.9e-109 400.2 271 67.9
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 3.3e-109 399.4 269 67.7
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 3.3e-109 399.4 271 66.8
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 4.3e-109 399.1 271 68.6
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 4.3e-109 399.1 271 71.2
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 5.6e-109 398.7 269 67.3
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 5.6e-109 398.7 271 67.2
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 7.3e-109 398.3 269 66.9
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 7.3e-109 398.3 351 57.5
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.6e-108 397.1 269 66.9
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.6e-108 397.1 270 67.4
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 1.6e-108 397.1 272 66.9
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 2.8e-108 396.4 308 63.6
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 4.8e-108 395.6 274 66.4
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 4.8e-108 395.6 262 69.1
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 6.2e-108 395.2 270 67.8
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 8.1e-108 394.8 271 67.2
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 1.1e-107 394.4 269 66.9
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 2.4e-107 393.3 279 65.6
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 1.5e-106 390.6 281 69.4
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 3.4e-106 389.4 269 65.8
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 7.6e-106 388.3 279 64.2
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 2.2e-105 386.7 269 67.3
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 2.9e-105 386.3 269 69.9
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 5.4e-104 382.1 234 76.1
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 7.1e-104 381.7 268 64.2
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.0e-102 377.9 285 62.5
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 8.7e-102 374.8 271 67.5
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 3.6e-100 369.4 271 61.3
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.5e-98 364.0 271 61.6
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 4.5e-90 335.9 265 63.8
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.4e-88 330.9 202 74.8
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 1.1e-85 321.2 232 63.8
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 1.5e-85 320.9 269 55.0
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 5.3e-83 312.4 234 65.0
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 2.1e-79 300.4 206 64.6
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 6.7e-78 295.4 275 53.1
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 1.3e-76 291.2 258 54.3
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 3.1e-75 286.6 165 79.4
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 1.5e-74 284.3 180 71.1
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.0e-74 283.9 234 61.1
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.1e-63 247.3 149 76.5
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 5.2e-62 242.7 141 76.6
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 3.7e-60 236.5 141 74.5
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 5.0e-57 226.1 207 51.2
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 6.7e-54 215.7 186 58.1
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 3.3e-53 213.4 138 72.5
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 1.8e-51 207.6 140 71.4
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.2e-47 194.9 129 72.9
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 3.6e-47 193.4 132 68.2
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.0e-46 191.8 170 52.4
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 4.4e-45 186.4 126 67.5
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 5.4e-43 179.5 140 62.9
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.0e-38 165.2 105 73.3
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 1.0e-33 148.7 106 65.1
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 6.1e-31 139.4 107 62.6
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.8e-30 137.9 105 61.9
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.3e-30 137.5 105 62.9
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.6e-23 114.8 71 71.8
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 9.2e-19 99.0 51 84.3
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 3.0e-17 94.0 79 60.8


User provided reference genes

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