Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 7.8e-163 577.0 282 100.0
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 4.8e-152 541.2 282 94.7
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 7.3e-145 517.3 282 90.8
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 3.1e-103 379.0 271 74.2
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 6.5e-101 371.3 267 70.0
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 1.1e-100 370.5 272 70.6
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 1.5e-100 370.2 282 68.4
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 1.9e-100 369.8 267 71.2
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 1.8e-98 363.2 215 80.9
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 3.0e-98 362.5 226 77.9
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 3.3e-97 359.0 271 69.7
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 7.4e-97 357.8 277 67.9
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 9.7e-97 357.5 220 75.9
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 1.7e-96 356.7 214 79.0
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 2.2e-96 356.3 278 66.9
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 2.8e-96 355.9 213 80.3
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 2.8e-96 355.9 275 65.8
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 3.7e-96 355.5 233 75.1
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 4.8e-96 355.1 216 76.4
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 2.4e-95 352.8 266 69.2
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 2.4e-95 352.8 257 67.7
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 3.1e-95 352.4 279 67.4
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 7.0e-95 351.3 270 68.5
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 7.0e-95 351.3 258 70.2
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 2.0e-94 349.7 224 75.4
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 2.6e-94 349.4 272 68.0
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 5.9e-94 348.2 267 68.2
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 1.7e-93 346.7 275 65.8
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 2.9e-93 345.9 213 77.5
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 3.8e-93 345.5 298 62.8
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 5.0e-93 345.1 279 67.0
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 5.0e-93 345.1 253 68.8
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 8.5e-93 344.4 279 65.9
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 1.1e-92 344.0 269 67.7
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 1.1e-92 344.0 220 73.2
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 1.5e-92 343.6 275 68.0
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 1.5e-92 343.6 239 71.5
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 1.9e-92 343.2 239 71.5
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.9e-92 343.2 269 64.3
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 2.5e-92 342.8 239 72.4
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 3.2e-92 342.4 282 64.9
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 4.2e-92 342.0 240 72.5
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 5.5e-92 341.7 240 72.1
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 5.5e-92 341.7 240 72.1
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 5.5e-92 341.7 275 66.9
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 7.2e-92 341.3 239 72.0
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 7.2e-92 341.3 239 71.1
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 1.2e-91 340.5 280 63.9
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 1.6e-91 340.1 248 70.2
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 1.6e-91 340.1 216 76.4
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 2.1e-91 339.7 275 66.5
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 6.1e-91 338.2 241 71.0
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 8.0e-91 337.8 227 72.7
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.0e-90 337.4 275 66.2
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 1.8e-90 336.7 280 63.9
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 2.3e-90 336.3 257 65.4
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 3.0e-90 335.9 263 65.0
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 4.0e-90 335.5 241 70.5
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 5.2e-90 335.1 240 70.4
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 6.8e-90 334.7 205 77.1
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 1.2e-89 334.0 274 65.7
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 1.5e-89 333.6 255 65.1
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 2.0e-89 333.2 276 63.4
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 2.0e-89 333.2 218 73.4
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 4.4e-89 332.0 259 64.5
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 4.4e-89 332.0 218 72.9
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 7.5e-89 331.3 250 66.4
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 1.3e-88 330.5 231 72.3
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.8e-87 326.6 237 67.5
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 2.4e-87 326.2 252 64.7
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 1.2e-86 323.9 289 61.9
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 3.5e-86 322.4 224 69.6
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 2.5e-84 316.2 239 67.4
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 3.2e-84 315.8 232 70.3
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 5.5e-84 315.1 227 69.6
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 8.8e-82 307.8 281 61.9
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 4.4e-81 305.4 231 67.5
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 2.8e-80 302.8 255 65.1
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 6.3e-80 301.6 256 62.9
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 8.3e-80 301.2 172 81.4
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 8.3e-80 301.2 178 78.1
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 7.0e-79 298.1 232 65.1
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 2.7e-78 296.2 248 63.7
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 1.5e-76 290.4 206 70.4
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 3.3e-76 289.3 213 68.1
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 1.6e-75 287.0 229 67.7
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 2.1e-75 286.6 168 76.2
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 8.9e-74 281.2 269 58.0
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 1.2e-73 280.8 319 53.3
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 3.4e-73 279.3 282 57.1
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 1.4e-71 273.9 188 71.8
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.8e-71 273.5 216 63.9
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 7.0e-71 271.6 336 47.9
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 5.0e-69 265.4 218 64.7
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 1.1e-68 264.2 202 67.8
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 5.6e-68 261.9 263 56.7
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 1.2e-67 260.8 219 63.5
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 2.2e-64 250.0 208 65.4
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 2.9e-64 249.6 195 68.2
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 7.8e-62 241.5 170 72.4
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 5.0e-61 238.8 233 52.8
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 1.7e-53 213.8 180 57.8
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 6.6e-53 211.8 141 72.3
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 1.2e-51 207.6 258 51.9
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 1.1e-50 204.5 196 55.6
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 1.4e-50 204.1 203 50.7
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 2.0e-49 200.3 187 61.5
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.7e-48 197.2 180 52.2
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 8.4e-48 194.9 120 75.0
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 1.3e-37 161.0 271 39.5
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 2.3e-37 160.2 186 47.3
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 2.8e-35 153.3 85 83.5
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 3.6e-35 152.9 80 86.2
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 3.8e-32 142.9 76 85.5
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 3.2e-31 139.8 118 59.3
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 3.3e-28 129.8 69 84.1
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 2.4e-26 123.6 118 45.8
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 7.6e-25 118.6 177 38.4
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.2e-22 111.3 58 86.2
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 3.0e-21 106.7 167 45.5
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 2.4e-18 97.1 118 50.8
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 9.0e-18 95.1 123 49.6
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 4.2e-15 86.3 64 64.1
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 4.2e-15 86.3 51 76.5
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 5.5e-15 85.9 45 82.2
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 3.0e-13 80.1 44 79.5
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 5.7e-12 75.9 108 47.2


User provided reference genes

Program Settings