Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 2.8e-152 542.0 285 100.0
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 3.7e-88 328.9 256 62.1
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 5.4e-87 325.1 258 62.0
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 5.4e-87 325.1 255 62.4
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 7.1e-87 324.7 255 62.0
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 6.0e-86 321.6 258 60.9
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 1.0e-85 320.9 255 60.8
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 3.0e-85 319.3 256 58.6
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 6.6e-85 318.2 255 59.2
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.9e-84 316.6 252 59.5
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.9e-84 316.6 226 65.0
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.3e-84 315.5 226 65.0
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 5.6e-84 315.1 226 64.2
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 7.3e-84 314.7 233 65.2
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 1.2e-83 313.9 258 60.1
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.6e-83 313.5 226 64.6
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.6e-83 312.4 226 64.2
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 3.6e-83 312.4 255 59.2
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 6.2e-83 311.6 256 61.3
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 4.0e-82 308.9 256 59.8
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 4.0e-82 308.9 249 59.8
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 5.2e-82 308.5 256 59.0
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 1.2e-81 307.4 254 59.8
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 2.0e-81 306.6 255 58.4
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 2.6e-81 306.2 259 58.7
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 5.8e-81 305.1 255 58.0
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 9.9e-81 304.3 259 57.9
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 2.2e-80 303.1 224 62.5
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 1.4e-79 300.4 226 61.1
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 1.9e-79 300.1 259 56.4
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.6e-78 297.0 256 55.9
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 2.7e-78 296.2 227 62.6
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 2.7e-78 296.2 256 57.8
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 2.7e-78 296.2 279 53.8
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 3.5e-78 295.8 247 56.7
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 4.6e-78 295.4 226 62.4
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 6.0e-78 295.0 252 57.5
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 7.8e-78 294.7 257 57.2
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 7.8e-78 294.7 227 62.1
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 1.0e-77 294.3 267 56.9
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 1.3e-77 293.9 257 57.2
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 1.3e-77 293.9 256 55.9
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 1.7e-77 293.5 249 55.4
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 5.1e-77 292.0 256 56.2
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 5.1e-77 292.0 254 55.5
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 1.1e-76 290.8 260 55.4
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 1.1e-76 290.8 257 53.3
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 1.1e-76 290.8 257 54.9
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 1.5e-76 290.4 257 56.0
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 1.5e-76 290.4 256 56.2
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 2.5e-76 289.7 257 56.0
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 3.3e-76 289.3 256 55.1
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 3.3e-76 289.3 257 54.9
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 7.3e-76 288.1 251 56.6
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 9.6e-76 287.7 257 54.9
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 3.6e-75 285.8 207 63.3
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.1e-74 284.3 273 51.6
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 1.4e-74 283.9 258 54.7
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 2.4e-74 283.1 259 55.2
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 3.1e-74 282.7 250 54.8
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 3.1e-74 282.7 248 54.4
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 6.9e-74 281.6 259 54.8
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 1.2e-73 280.8 255 52.9
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 2.6e-73 279.6 256 52.7
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 2.6e-73 279.6 256 53.1
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 7.6e-73 278.1 214 61.7
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 9.9e-73 277.7 249 51.4
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 2.2e-72 276.6 256 53.9
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 2.2e-72 276.6 265 51.7
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 3.8e-72 275.8 257 53.3
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 6.4e-72 275.0 259 51.7
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 3.2e-71 272.7 260 53.8
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 7.1e-71 271.6 252 53.2
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 1.2e-70 270.8 254 53.1
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 1.6e-70 270.4 257 52.9
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 2.7e-70 269.6 237 56.5
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 6.0e-70 268.5 254 50.0
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 3.9e-69 265.8 247 51.4
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 8.7e-69 264.6 234 54.3
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 1.1e-68 264.2 259 50.6
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-67 260.8 240 52.1
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 1.6e-67 260.4 241 53.1
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 3.6e-67 259.2 205 61.0
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 3.6e-67 259.2 240 52.1
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 6.2e-67 258.5 244 51.6
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 1.1e-66 257.7 254 50.8
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 2.4e-66 256.5 240 52.5
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 4.5e-65 252.3 251 51.8
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 7.6e-65 251.5 234 52.6
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 3.8e-64 249.2 259 47.9
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 8.4e-64 248.1 215 54.0
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 4.2e-63 245.7 236 51.7
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 1.1e-60 237.7 198 54.5
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 6.2e-59 231.9 259 48.6
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.4e-58 230.7 230 46.5
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 1.2e-57 227.6 163 62.6
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 7.1e-55 218.4 241 48.1
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 7.9e-54 214.9 221 48.0
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 3.9e-53 212.6 136 67.6
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 4.8e-51 205.7 208 52.4
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 8.2e-51 204.9 246 41.9
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.5e-49 200.7 168 56.5
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.9e-44 183.7 241 45.6
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.4e-39 167.5 186 47.3
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.8e-37 160.6 197 40.6
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 1.5e-36 157.5 223 38.6
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 4.8e-35 152.5 197 43.1
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 1.3e-32 144.4 114 64.9
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 3.8e-32 142.9 240 37.1
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 7.9e-30 135.2 156 48.7
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 8.8e-29 131.7 241 34.4
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 2.0e-28 130.6 165 41.2
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 2.2e-27 127.1 214 35.0
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 3.7e-27 126.3 242 33.5
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 1.4e-26 124.4 79 65.8
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 4.5e-25 119.4 239 31.8
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 3.6e-22 109.8 92 58.7
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 1.7e-19 100.9 134 41.8
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 7.7e-17 92.0 106 50.0
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 1.1e-15 88.2 59 69.5
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.4e-13 81.3 118 39.8
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 1.2e-12 78.2 110 42.7
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 1.5e-12 77.8 72 56.9
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 3.4e-12 76.6 108 44.4
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 2.2e-08 63.9 300 23.0
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 1.9e-07 60.8 124 28.2
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 2.5e-07 60.5 260 24.6


User provided reference genes

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