Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 3.6e-97 358.2 179 100.0
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 9.3e-77 290.4 179 79.9
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 1.2e-76 290.0 179 79.3
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 1.6e-76 289.7 178 80.3
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 2.7e-76 288.9 179 81.6
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 3.5e-76 288.5 179 79.3
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 7.8e-76 287.3 179 77.7
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.0e-75 287.0 178 80.3
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.3e-75 285.8 179 79.9
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 5.1e-75 284.6 178 79.8
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.9e-74 282.7 179 77.1
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.5e-74 282.3 180 77.8
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 3.3e-74 282.0 180 78.3
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.3e-74 282.0 179 78.2
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 4.3e-74 281.6 173 80.9
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 7.3e-74 280.8 179 76.5
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 7.3e-74 280.8 178 77.0
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 9.6e-74 280.4 179 78.8
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.6e-73 279.6 179 77.1
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.1e-73 279.3 179 76.5
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 2.8e-73 278.9 179 78.2
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.8e-73 278.9 180 77.2
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 4.8e-73 278.1 179 76.5
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.8e-73 278.1 178 75.8
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 6.2e-73 277.7 178 75.8
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 6.2e-73 277.7 179 74.3
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 6.2e-73 277.7 177 78.5
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.1e-72 276.9 178 77.0
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.4e-72 276.6 178 78.1
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.1e-72 275.4 179 76.5
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 76.5
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 76.5
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 74.9
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 5.3e-72 274.6 179 78.8
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 6.9e-72 274.2 178 75.8
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 9.0e-72 273.9 179 76.0
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.2e-71 273.5 173 79.2
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 76.5
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 76.5
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 76.0
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 2.6e-71 272.3 179 73.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.6e-71 272.3 169 79.3
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 3.4e-71 271.9 175 76.6
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 4.5e-71 271.6 179 74.9
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 76.0
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 76.0
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 2.2e-70 269.2 179 74.9
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 2.2e-70 269.2 169 77.5
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 75.4
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.9e-70 268.9 175 75.4
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 3.8e-70 268.5 179 74.9
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 4.9e-70 268.1 179 75.4
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.9e-70 268.1 180 76.7
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 6.4e-70 267.7 180 75.0
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 76.0
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 74.9
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 6.4e-70 267.7 179 74.3
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 76.0
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 74.3
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 74.9
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 8.4e-70 267.3 178 74.7
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 74.3
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 74.3
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 1.4e-69 266.5 207 68.6
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 73.7
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 74.9
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 76.0
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 73.2
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 74.3
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 5.4e-69 264.6 179 73.2
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 9.3e-69 263.8 179 74.3
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.1e-68 262.7 179 74.9
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 2.7e-68 262.3 179 72.6
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 4.6e-68 261.5 179 73.2
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 6.0e-68 261.2 179 72.1
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.8e-67 259.6 168 78.6
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.3e-67 259.2 174 75.3
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 3.0e-67 258.8 171 75.4
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 3.9e-67 258.5 173 74.6
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 73.7
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 72.1
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 8.7e-67 257.3 179 73.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.1e-66 256.9 177 73.4
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.5e-66 256.5 179 72.6
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.9e-66 256.1 169 74.6
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.3e-66 255.0 178 71.3
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.6e-66 254.6 179 71.5
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 5.6e-66 254.6 157 80.3
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 7.4e-66 254.2 178 71.3
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 7.4e-66 254.2 173 73.4
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.6e-65 253.1 175 71.4
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.2e-65 251.1 179 71.5
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 8.1e-65 250.8 179 68.7
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.1e-64 250.4 179 68.7
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.1e-64 250.4 177 71.8
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.1e-64 250.4 177 71.8
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.8e-64 249.6 179 69.3
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.8e-64 249.6 176 71.0
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 4.0e-64 248.4 176 71.0
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 4.0e-64 248.4 176 70.5
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 5.3e-64 248.1 176 71.0
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 5.3e-64 248.1 168 73.2
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 6.9e-64 247.7 179 69.3
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 6.9e-64 247.7 167 74.3
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 9.0e-64 247.3 182 68.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.2e-63 246.9 176 71.0
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 2.0e-63 246.1 180 70.6
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 2.0e-63 246.1 188 67.6
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 5.8e-63 244.6 169 72.2
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.0e-62 243.8 180 69.4
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.0e-62 243.8 167 73.7
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.5e-62 241.1 221 60.6
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.1e-61 240.4 175 68.6
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 1.4e-61 240.0 169 69.8
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 2.5e-61 239.2 175 68.6
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 5.5e-61 238.0 212 61.3
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 5.5e-61 238.0 175 70.9
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 7.1e-61 237.7 179 68.2
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.1e-61 237.7 159 74.2
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 3.5e-60 235.3 169 68.0
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 6.7e-59 231.1 176 67.6
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.5e-58 229.9 174 69.0
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.5e-58 229.9 147 76.2
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.1e-56 222.2 150 74.0
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 9.0e-56 220.7 150 73.3
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.0e-54 217.2 159 69.8
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.2e-54 216.1 179 63.7
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 9.0e-48 194.1 120 82.5
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 1.0e-46 190.7 161 56.5
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 4.2e-45 185.3 169 61.5
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 9.4e-45 184.1 171 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 1.2e-44 183.7 161 54.7
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.2e-44 183.7 170 60.6
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.6e-44 183.3 169 53.3
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 7.9e-44 181.0 115 77.4
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 8.8e-43 177.6 117 78.6
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.5e-42 176.0 114 78.9
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 4.3e-42 175.3 163 54.0
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 6.5e-38 161.4 172 50.6
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 7.9e-36 154.5 154 55.8
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.0e-35 154.1 189 50.3
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 3.9e-35 152.1 162 50.6
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 8.8e-35 151.0 105 69.5
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 1.5e-34 150.2 86 83.7
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 2.8e-33 146.0 220 40.9
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 9.1e-32 141.0 165 46.7
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.2e-31 140.6 83 79.5
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.5e-29 133.7 82 78.0
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 8.0e-28 127.9 98 68.4
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.0e-27 127.5 142 50.0
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 2.0e-26 123.2 93 63.4
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.6e-26 122.9 94 63.8
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 7.4e-26 121.3 88 68.2
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 9.7e-26 120.9 75 80.0
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.8e-24 116.7 97 59.8
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.6e-23 113.6 117 55.6
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.5e-21 107.1 85 63.5
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 2.5e-21 106.3 147 44.9
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 1.8e-16 90.1 221 35.3
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 1.5e-13 80.5 52 69.2
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 2.7e-12 76.3 85 52.9
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 2.0e-10 70.1 146 34.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.7e-09 67.0 54 59.3
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.8e-08 63.5 48 60.4
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 1.8e-08 63.5 42 66.7


User provided reference genes

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