Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04424 Eucalyptus grandis HOM05D001419 ORTHO05D001376 1.4e-142 510.4 435 100.0
PGR004G1853 Punica granatum HOM05D001419 ORTHO05D001376 3.4e-40 170.2 377 52.0
Cfa006501 Carpinus fangiana HOM05D001419 ORTHO05D001376 1.6e-26 124.8 129 58.1
Dinv27608 Davidia involucrata HOM05D001419 ORTHO05D001376 8.1e-26 122.5 382 47.9
Haze_04287 Corylus avellana HOM05D001419 ORTHO05D001376 1.8e-25 121.3 125 58.4
Cc02_g32270 Coffea canephora HOM05D001419 ORTHO05D001376 3.4e-24 117.1 378 36.8
Prupe.6G335100 Prunus persica HOM05D001419 ORTHO05D001376 2.9e-23 114.0 128 57.8
QL03p000945 Quercus lobata HOM05D001419 ORTHO05D001376 4.9e-23 113.2 117 62.4
MD12G1231500 Malus domestica HOM05D001419 ORTHO05D001376 5.5e-22 109.8 452 39.4
MD00G1051700 Malus domestica HOM05D001419 ORTHO05D001376 7.1e-22 109.4 123 62.6
vmacro05063 Vaccinium macrocarpon HOM05D001419 ORTHO05D001376 3.0e-20 104.0 123 52.0
CSS0002764 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 3.9e-20 103.6 404 31.7
Rhsim07G0176600 Rhododendron simsii HOM05D001419 ORTHO05D001376 5.1e-20 103.2 384 38.8
TAR633G1372 Trochodendron aralioides HOM05D001419 ORTHO05D001376 5.1e-20 103.2 127 51.2
SalBow8G5217 Salvia bowleyana HOM05D001419 ORTHO05D001376 1.6e-18 98.2 368 35.3
CsaV3_2G004520 Cucumis sativus L. HOM05D001419 ORTHO05D001376 2.1e-18 97.8 139 54.0
MELO3C004339.2 Cucumis melo HOM05D001419 ORTHO05D001376 2.8e-18 97.4 146 51.4
Ca_09389_v3 Cicer arietinum L. HOM05D001419 ORTHO05D001376 3.7e-18 97.1 117 54.7
CiPaw.07G011100 Carya illinoinensis HOM05D001419 ORTHO05D001376 8.1e-18 95.9 126 51.6
SalBow8G0433 Salvia bowleyana HOM05D001419 ORTHO05D001376 1.1e-17 95.5 375 32.5
ClCG02G016250 Citrullus lanatus HOM05D001419 ORTHO05D001376 1.8e-17 94.7 131 55.0
Potri.005G044600 Populus trichocarpa HOM05D001419 ORTHO05D001376 1.8e-17 94.7 102 65.7
Sabra05G0041300 Salix brachista HOM05D001419 ORTHO05D001376 3.1e-17 94.0 103 65.0
Sed0016461 Sechium edule HOM05D001419 ORTHO05D001376 4.0e-17 93.6 381 48.6
Oeu001298.2 Olea europaea HOM05D001419 ORTHO05D001376 6.9e-17 92.8 353 47.0
Medtr7g114220 Medicago truncatula HOM05D001419 ORTHO05D001376 9.0e-17 92.4 115 53.0
Psat3g009000 Pisum sativum HOM05D001419 ORTHO05D001376 2.6e-16 90.9 111 52.3
Nn3g21279 Nelumbo nucifera HOM05D001419 ORTHO05D001376 3.4e-16 90.5 151 45.0
Migut.M00653 Erythranthe guttata HOM05D001419 ORTHO05D001376 4.9e-15 86.7 85 62.4
Duzib177G0661 Durio zibethinus HOM05D001419 ORTHO05D001376 5.5e-14 83.2 101 57.4
Ah.15g092890 Amaranthus hybridus HOM05D001419 ORTHO05D001376 9.3e-14 82.4 373 30.0
VMungo0540G0088 Vigna mungo HOM05D001419 ORTHO05D001376 2.1e-13 81.3 118 48.3
Manes.08G125500 Manihot esculenta HOM05D001419 ORTHO05D001376 2.7e-13 80.9 104 54.8
EL10Ac4g09245 Beta vulgaris HOM05D001419 ORTHO05D000001 3.5e-13 80.5 145 50.3
Thhalv10020103m.g Eutrema salsugineum HOM05D001419 ORTHO05D001376 3.5e-13 80.5 104 53.8
CARHR079320 Cardamine hirsuta HOM05D001419 ORTHO05D001376 4.6e-13 80.1 102 54.9
Carub.0003s0424 Capsella rubella HOM05D001419 ORTHO05D001376 6.0e-13 79.7 120 50.0
Duzib177G0379 Durio zibethinus HOM05D001419 ORTHO05D001376 6.0e-13 79.7 105 54.3
RcHm_v2.0_Chr3g0452891 Rosa chinensis HOM05D001419 ORTHO05D001376 6.0e-13 79.7 444 39.6
Lj9A675T37 Lonicera japonica HOM05D001419 ORTHO05D001376 7.9e-13 79.3 465 48.8
Actinidia30906 Actinidia chinensis HOM05D001419 ORTHO05D001376 1.3e-12 78.6 112 51.8
AL3G15370 Arabidopsis lyrata HOM05D001419 ORTHO05D001376 1.3e-12 78.6 100 54.0
Lj6A836G34 Lonicera japonica HOM05D001419 ORTHO05D001376 1.3e-12 78.6 84 47.6
Potri.013G031151 Populus trichocarpa HOM05D001419 ORTHO05D001376 1.3e-12 78.6 92 57.6
HPP92_011335 Vanilla planifolia HOM05D001419 ORTHO05D001376 1.3e-12 78.6 84 52.4
AT4G08630 Arabidopsis thaliana HOM05D001419 ORTHO05D001376 1.8e-12 78.2 112 50.0
Cpa.g.sc117.14 Carica papaya HOM05D001419 ORTHO05D001376 1.8e-12 78.2 106 50.0
BcaC05g29982 Brassica carinata HOM05D001419 ORTHO05D001376 3.0e-12 77.4 87 50.6
Sp3g03830 Schrenkiella parvula HOM05D001419 ORTHO05D001376 5.1e-12 76.6 100 53.0
PGSC0003DMG400026371 Solanum tuberosum HOM05D001419 ORTHO05D022512 5.1e-12 76.6 130 42.3
Thecc.05G252400 Theobroma cacao HOM05D001419 ORTHO05D001376 5.1e-12 76.6 97 57.7
ATR0706G100 Amborella trichopoda HOM05D001419 ORTHO05D001376 6.7e-12 76.3 121 43.8
PSO675G4352 Papaver somniferum HOM05D001419 ORTHO05D001376 8.7e-12 75.9 123 46.3
Sed0012428 Sechium edule HOM05D001419 ORTHO05D001376 8.7e-12 75.9 169 45.0
Sopen10g011780 Solanum pennellii HOM05D001419 ORTHO05D001376 8.7e-12 75.9 127 42.5
Phvul.006G096800 Phaseolus vulgaris HOM05D001419 ORTHO05D001376 1.1e-11 75.5 397 28.7
Solyc10g037940.1 Solanum lycopersicum HOM05D001419 ORTHO05D022512 1.1e-11 75.5 126 41.3
Aa31LG5G15430 Aethionema arabicum HOM05D001419 ORTHO05D001376 1.5e-11 75.1 85 51.8
PSO541G2430 Papaver somniferum HOM05D001419 ORTHO05D001376 1.9e-11 74.7 126 46.8
FAN14G0260 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.5e-11 74.3 122 42.6
Aqoxy5G00629 Aquilegia oxysepala HOM05D001419 ORTHO05D001376 3.3e-11 73.9 128 49.2
Actinidia30595 Actinidia chinensis HOM05D001419 ORTHO05D001376 7.4e-11 72.8 84 47.6
COL.COLO4_36052 Corchorus olitorius HOM05D001419 ORTHO05D001376 9.6e-11 72.4 102 49.0
Gohir.D11G247500 Gossypium hirsutum HOM05D001419 ORTHO05D001376 1.6e-10 71.6 87 54.0
Gorai.007G263800 Gossypium raimondii HOM05D001419 ORTHO05D001376 1.6e-10 71.6 87 54.0
BcaC05g29984 Brassica carinata HOM05D001276 ORTHO05D001085 2.1e-10 71.2 104 49.0
A05p42580 Brassica napus HOM05D001419 ORTHO05D001376 2.8e-10 70.9 100 50.0
BolC5t34881H Brassica oleracea HOM05D001419 ORTHO05D001376 2.8e-10 70.9 100 50.0
BraA05t22995Z Brassica rapa HOM05D001419 ORTHO05D001376 2.8e-10 70.9 100 50.0
CSS0026667 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 2.8e-10 70.9 85 44.7
Lalb_Chr18g0045311 Lupinus albus HOM05D001419 ORTHO05D001376 3.7e-10 70.5 104 51.9
FvH4_5g09200 Fragaria vesca HOM05D001419 ORTHO05D001376 4.8e-10 70.1 83 47.0
Sabra12G0077800 Salix brachista HOM05D001419 ORTHO05D001376 4.8e-10 70.1 110 40.9
C05p62260 Brassica napus HOM05D001419 ORTHO05D001376 6.3e-10 69.7 100 49.0
FAN05G2203 Fragaria x ananassa HOM05D001419 ORTHO05D001376 6.3e-10 69.7 88 48.9
Oeu058429.1 Olea europaea HOM05D031317 ORTHO05D022512 6.3e-10 69.7 124 46.0
Prupe.1G217300 Prunus persica HOM05D001419 ORTHO05D001376 8.2e-10 69.3 85 41.2
FAN13G1977 Fragaria x ananassa HOM05D001419 ORTHO05D001376 1.1e-09 68.9 79 45.6
FAN18G1957 Fragaria x ananassa HOM05D001419 ORTHO05D001376 1.1e-09 68.9 79 45.6
Peaxi162Scf00410g00019 Petunia axillaris HOM05D001419 ORTHO05D001376 1.1e-09 68.9 355 29.6
Migut.K01042 Erythranthe guttata HOM05D001419 ORTHO05D001376 2.4e-09 67.8 79 46.8
LjContig00470g0006858 Lotus japonicus HOM05D001419 ORTHO05D001376 2.4e-09 67.8 82 46.3
MD06G1132600 Malus domestica HOM05D001419 ORTHO05D001376 2.4e-09 67.8 85 44.7
Nitab4.5_0000060g0030 Nicotiana tabacum HOM05D001419 ORTHO05D001376 2.4e-09 67.8 81 48.1
FAN08G1260 Fragaria x ananassa HOM05D001419 ORTHO05D001376 3.1e-09 67.4 75 46.7
DCAR_031210 Daucus carota HOM05D001419 ORTHO05D001376 4.1e-09 67.0 79 45.6
FAN04G1873 Fragaria x ananassa HOM05D001419 ORTHO05D001376 4.1e-09 67.0 75 46.7
Nitab4.5_0002116g0060 Nicotiana tabacum HOM05D001419 ORTHO05D001376 4.1e-09 67.0 81 46.9
Glyma.19G240300 Glycine max HOM05D001419 ORTHO05D001376 6.9e-09 66.2 118 49.2
vmacro01028 Vaccinium macrocarpon HOM05D001419 ORTHO05D001376 9.0e-09 65.9 96 42.7
Haze_07114 Corylus avellana HOM05D001419 ORTHO05D001376 1.2e-08 65.5 84 41.7
Glyma.03G242800 Glycine max HOM05D001419 ORTHO05D001376 1.2e-08 65.5 118 49.2
Peaxi162Scf00128g01744 Petunia axillaris HOM05D001419 ORTHO05D001376 1.5e-08 65.1 78 46.2
CSS0017420 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 2.0e-08 64.7 74 44.6
CSS0009563 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 2.6e-08 64.3 85 42.4
Ciclev10031078m.g Citrus clementina HOM05D001419 ORTHO05D001376 2.6e-08 64.3 71 47.9
Thhalv10024690m.g Eutrema salsugineum HOM05D001419 ORTHO05D001376 2.6e-08 64.3 70 52.9
CAN.G843.26 Capsicum annuum HOM05D001419 ORTHO05D001376 3.4e-08 63.9 85 42.4
Cfa018722 Carpinus fangiana HOM05D001419 ORTHO05D001376 3.4e-08 63.9 84 41.7
RcHm_v2.0_Chr7g0188961 Rosa chinensis HOM05D001419 ORTHO05D001376 3.4e-08 63.9 83 44.6
CANSAT54G1295 Cannabis sativa HOM05D001419 ORTHO05D001376 4.5e-08 63.5 178 37.6
Peaxi162Scf00314g00524 Petunia axillaris HOM05D001419 ORTHO05D001376 4.5e-08 63.5 85 42.4
Hund02495 Selenicereus undatus HOM05D001419 ORTHO05D001376 4.5e-08 63.5 75 46.7
FAN09G0147 Fragaria x ananassa HOM05D001419 ORTHO05D001376 5.9e-08 63.2 459 35.1
MD13G1129100 Malus domestica HOM05D001419 ORTHO05D001376 5.9e-08 63.2 87 36.8
TAR629G0843 Trochodendron aralioides HOM05D001419 ORTHO05D001376 5.9e-08 63.2 146 43.8
Cpa.g.sc117.12 Carica papaya HOM05D001419 ORTHO05D001376 1.0e-07 62.4 86 48.8
AL7G28080 Arabidopsis lyrata HOM05D001419 ORTHO05D001376 1.3e-07 62.0 70 48.6
FAN09G2239 Fragaria x ananassa HOM05D001419 ORTHO05D001376 1.3e-07 62.0 122 50.0
Hund07015 Selenicereus undatus HOM05D001419 ORTHO05D001376 1.3e-07 62.0 397 31.0
AT4G25070 Arabidopsis thaliana HOM05D001419 ORTHO05D001376 2.2e-07 61.2 70 47.1
BraA01t01587Z Brassica rapa HOM05D001419 ORTHO05D001376 2.2e-07 61.2 67 50.7
Lsat_1_v5_gn_1_32281 Lactuca sativa HOM05D001419 ORTHO05D001376 2.2e-07 61.2 138 40.6
MD16G1129000 Malus domestica HOM05D001419 ORTHO05D001376 2.2e-07 61.2 83 37.3
GSVIVG01021966001 Vitis vinifera HOM05D001419 ORTHO05D001376 2.2e-07 61.2 52 61.5
FAN05G3489 Fragaria x ananassa HOM05D001419 ORTHO05D001376 2.9e-07 60.8 88 54.5
ClCG03G004000 Citrullus lanatus HOM05D001419 ORTHO05D001376 3.8e-07 60.5 102 38.2
Ciclev10003514m.g Citrus clementina HOM05D001419 ORTHO05D001376 3.8e-07 60.5 52 61.5
BcaNung03996 Brassica carinata HOM05D001419 ORTHO05D001376 5.0e-07 60.1 67 49.3
A01p16320 Brassica napus HOM05D001419 ORTHO05D001376 5.0e-07 60.1 67 49.3
C01p20470 Brassica napus HOM05D001419 ORTHO05D001376 5.0e-07 60.1 73 45.2
CARHR232460 Cardamine hirsuta HOM05D001419 ORTHO05D001376 5.0e-07 60.1 70 45.7
Nitab4.5_0003439g0020 Nicotiana tabacum HOM05D001419 ORTHO05D001376 5.0e-07 60.1 117 41.0
QL10p000923 Quercus lobata HOM05D001419 ORTHO05D001376 5.0e-07 60.1 71 45.1
Atru.chr2.630 Acer truncatum HOM05D001419 ORTHO05D001376 8.4e-07 59.3 98 52.0
AUR62028853 Chenopodium quinoa HOM05D001419 ORTHO05D001376 8.4e-07 59.3 84 38.1
BolC1t01978H Brassica oleracea HOM05D001419 ORTHO05D001376 1.1e-06 58.9 73 43.8
Carub.0007s1597 Capsella rubella HOM05D001419 ORTHO05D001376 1.4e-06 58.5 67 47.8
CARHR189850 Cardamine hirsuta HOM05D001419 ORTHO05D001376 1.4e-06 58.5 71 45.1
THA.LOC104802815 Tarenaya hassleriana HOM05D001419 ORTHO05D001376 1.4e-06 58.5 111 43.2
THA.LOC104808047 Tarenaya hassleriana HOM05D001419 ORTHO05D001376 1.9e-06 58.2 69 44.9
arahy.Tifrunner.gnm1.ann1.JIRJ73 Arachis hypogaea HOM05D001419 ORTHO05D001376 2.5e-06 57.8 90 41.1
CSS0007272 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 2.5e-06 57.8 54 57.4
CSS0032280 Camellia sinensis var. sinensis HOM05D001419 ORTHO05D001376 2.5e-06 57.8 54 57.4
Oeu058428.1 Olea europaea HOM05D001419 ORTHO05D001376 2.5e-06 57.8 57 54.4
PGR119G0468 Punica granatum HOM05D001419 ORTHO05D001376 2.5e-06 57.8 143 40.6
TPR.G6935 Trifolium pratense HOM05D001419 ORTHO05D001376 2.5e-06 57.8 88 53.4
unitig_62.g23085 Utricularia gibba HOM05D001419 ORTHO05D001376 3.2e-06 57.4 95 48.4
AagrBONN_evm.TU.Sc2ySwM_344.2716 Anthoceros agrestis HOM05D001419 ORTHO05D001376 4.2e-06 57.0 66 45.5
BcaC04g19131 Brassica carinata HOM05D001419 ORTHO05D001376 4.2e-06 57.0 85 47.1
BcaC09g50813 Brassica carinata HOM05D001419 ORTHO05D001376 4.2e-06 57.0 72 44.4
FvH4_6g04230 Fragaria vesca HOM05D001419 ORTHO05D001376 4.2e-06 57.0 425 35.5
MBI11_g43871_MAGBIO Magnolia biondii HOM05D001419 ORTHO05D001376 4.2e-06 57.0 126 38.9
Sp7g23050 Schrenkiella parvula HOM05D001419 ORTHO05D001376 4.2e-06 57.0 70 47.1
AT5G23700 Arabidopsis thaliana HOM05D001419 ORTHO05D001376 7.2e-06 56.2 121 45.5
ClCG06G001770 Citrullus lanatus HOM05D001419 ORTHO05D001376 7.2e-06 56.2 157 38.9
Gohir.A11G237000 Gossypium hirsutum HOM05D001419 ORTHO05D001376 7.2e-06 56.2 58 62.1
AL6G34970 Arabidopsis lyrata HOM05D001419 ORTHO05D001376 9.3e-06 55.8 121 43.8
Dinv23208 Davidia involucrata HOM05D001419 ORTHO05D001376 9.3e-06 55.8 147 40.1
PSO478G0009 Papaver somniferum HOM05D001419 ORTHO05D001376 9.3e-06 55.8 126 42.9
Rhsim08G0195700 Rhododendron simsii HOM05D001419 ORTHO05D001376 9.3e-06 55.8 138 42.0


User provided reference genes

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