Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04420 Eucalyptus grandis HOM05D005517 ORTHO05D006760 1.2e-30 136.0 76 100.0
arahy.Tifrunner.gnm1.ann1.3828X0 Arachis hypogaea HOM05D005517 ORTHO05D006760 5.6e-23 110.5 76 80.3
Glyma.19G093900 Glycine max HOM05D005517 ORTHO05D006760 5.6e-23 110.5 77 81.8
ClCG05G013610 Citrullus lanatus HOM05D005517 ORTHO05D006760 1.2e-22 109.4 76 80.3
Medtr7g028755 Medicago truncatula HOM05D005517 ORTHO05D006760 1.2e-22 109.4 76 78.9
Lj1g0000511 Lotus japonicus HOM05D005517 ORTHO05D006760 1.6e-22 109.0 76 76.3
CANSAT64G1159 Cannabis sativa HOM05D005517 ORTHO05D006760 4.7e-22 107.5 77 80.5
Manes.15G162502 Manihot esculenta HOM05D005517 ORTHO05D006760 4.7e-22 107.5 77 80.5
MELO3C014894.2 Cucumis melo HOM05D005517 ORTHO05D006760 8.1e-22 106.7 76 81.6
Phvul.001G091300 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 1.8e-21 105.5 77 77.9
Atru.chr6.2589 Acer truncatum HOM05D005517 ORTHO05D006760 5.2e-21 104.0 77 83.1
TAR629G2363 Trochodendron aralioides HOM05D005517 ORTHO05D006760 6.8e-21 103.6 77 76.6
Potri.001G328100 Populus trichocarpa HOM05D005517 ORTHO05D006760 8.9e-21 103.2 77 76.6
TAR371G1004 Trochodendron aralioides HOM05D005517 ORTHO05D006760 8.9e-21 103.2 77 76.6
CiPaw.03G057500 Carya illinoinensis HOM05D005517 ORTHO05D006760 1.5e-20 102.4 77 76.6
Ca_26962_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 1.5e-20 102.4 76 76.3
Glyma.16G054600 Glycine max HOM05D005517 ORTHO05D006760 1.5e-20 102.4 75 76.0
Lalb_Chr16g0380111 Lupinus albus HOM05D005517 ORTHO05D006760 1.5e-20 102.4 76 76.3
CsaV3_3G026940 Cucumis sativus L. HOM05D005517 ORTHO05D006760 2.6e-20 101.7 76 78.9
Psat6g022360 Pisum sativum HOM05D005517 ORTHO05D006760 7.5e-20 100.1 76 72.4
GSVIVG01028670001 Vitis vinifera HOM05D005517 ORTHO05D006760 7.5e-20 100.1 77 74.0
Ciclev10017370m.g Citrus clementina HOM05D005517 ORTHO05D006760 9.9e-20 99.8 77 79.2
Potri.017G066388 Populus trichocarpa HOM05D005517 ORTHO05D006760 1.3e-19 99.4 74 75.7
Sabra17G0058600 Salix brachista HOM05D005517 ORTHO05D006760 2.2e-19 98.6 74 73.0
Nn3g16415 Nelumbo nucifera HOM05D005517 ORTHO05D006760 2.9e-19 98.2 77 75.3
Prupe.5G129500 Prunus persica HOM05D005517 ORTHO05D006760 2.9e-19 98.2 76 77.6
RcHm_v2.0_Chr1g0371371 Rosa chinensis HOM05D005517 ORTHO05D006760 2.9e-19 98.2 76 77.6
RcHm_v2.0_Chr7g0186891 Rosa chinensis HOM05D005517 ORTHO05D006760 2.9e-19 98.2 76 77.6
THA.LOC104803813 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 2.9e-19 98.2 73 75.3
CSS0012820 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 6.4e-19 97.1 76 72.4
TWI74G0054 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 6.4e-19 97.1 76 72.4
TWI74G0227 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 6.4e-19 97.1 76 72.4
CAN.G473.115 Capsicum annuum HOM05D005517 ORTHO05D006760 8.3e-19 96.7 76 69.7
HPP92_000894 Vanilla planifolia HOM05D005517 ORTHO05D006760 8.3e-19 96.7 77 72.7
Dinv33325 Davidia involucrata HOM05D005517 ORTHO05D006760 1.1e-18 96.3 76 68.4
EL10Ac4g09777 Beta vulgaris HOM05D005517 ORTHO05D006760 1.4e-18 95.9 74 73.0
Psat5g229880 Pisum sativum HOM05D005517 ORTHO05D006760 1.4e-18 95.9 76 72.4
Migut.F00052 Erythranthe guttata HOM05D005517 ORTHO05D006760 1.9e-18 95.5 76 71.1
PSO302G0245 Papaver somniferum HOM05D005517 ORTHO05D006760 2.4e-18 95.1 76 65.8
PGR142G3118 Punica granatum HOM05D005517 ORTHO05D006760 2.4e-18 95.1 77 76.6
Aqoxy1G01489 Aquilegia oxysepala HOM05D005517 ORTHO05D006760 3.2e-18 94.7 77 68.8
Lalb_Chr05g0214841 Lupinus albus HOM05D005517 ORTHO05D006760 3.2e-18 94.7 76 71.1
Solyc04g009570.3 Solanum lycopersicum HOM05D005517 ORTHO05D006760 3.2e-18 94.7 76 68.4
Cc10_g16370 Coffea canephora HOM05D005517 ORTHO05D006760 4.1e-18 94.4 76 69.7
Dinv25651 Davidia involucrata HOM05D005517 ORTHO05D006760 4.1e-18 94.4 77 70.1
Gohir.A07G229900 Gossypium hirsutum HOM05D005517 ORTHO05D006760 4.1e-18 94.4 68 82.4
Gohir.D07G237100 Gossypium hirsutum HOM05D005517 ORTHO05D006760 4.1e-18 94.4 68 82.4
Gorai.001G273000 Gossypium raimondii HOM05D005517 ORTHO05D006760 4.1e-18 94.4 68 82.4
Zm00001eb293020 Zea mays HOM05D005517 ORTHO05D006760 4.1e-18 94.4 78 69.2
Duzib264G0094 Durio zibethinus HOM05D005517 ORTHO05D006760 5.4e-18 94.0 69 81.2
Oeu063019.1 Olea europaea HOM05D005517 ORTHO05D006760 5.4e-18 94.0 76 72.4
Thecc.04G039500 Theobroma cacao HOM05D005517 ORTHO05D006760 5.4e-18 94.0 69 81.2
Carub.0006s1230 Capsella rubella HOM05D005517 ORTHO05D006760 7.1e-18 93.6 74 71.6
Cpa.g.sc70.124 Carica papaya HOM05D005517 ORTHO05D006760 7.1e-18 93.6 73 76.7
Os05g0517800 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 7.1e-18 93.6 78 71.8
vmacro22457 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 7.1e-18 93.6 76 68.4
BcaC04g19059 Brassica carinata HOM05D005517 ORTHO05D006760 1.2e-17 92.8 73 69.9
C09p63000 Brassica napus HOM05D005517 ORTHO05D006760 1.2e-17 92.8 73 69.9
BolC9t59138H Brassica oleracea HOM05D005517 ORTHO05D006760 1.2e-17 92.8 73 69.9
CARHR199240 Cardamine hirsuta HOM05D005517 ORTHO05D006760 1.2e-17 92.8 73 72.6
Peaxi162Scf00420g00633 Petunia axillaris HOM05D005517 ORTHO05D006760 1.2e-17 92.8 76 65.8
Duzib147G1371 Durio zibethinus HOM05D005517 ORTHO05D006760 1.6e-17 92.4 73 78.1
Duzib187G1036 Durio zibethinus HOM05D005517 ORTHO05D006760 1.6e-17 92.4 69 78.3
Sopen04g004730 Solanum pennellii HOM05D005517 ORTHO05D006760 2.1e-17 92.0 76 67.1
PGSC0003DMG400032535 Solanum tuberosum HOM05D005517 ORTHO05D006760 2.1e-17 92.0 76 67.1
AT5G14105 Arabidopsis thaliana HOM05D005517 ORTHO05D006760 2.7e-17 91.7 74 70.3
A10p24320 Brassica napus HOM05D005517 ORTHO05D006760 2.7e-17 91.7 73 68.5
BraA10t44498Z Brassica rapa HOM05D005517 ORTHO05D006760 2.7e-17 91.7 73 68.5
Cc03_g13370 Coffea canephora HOM05D005517 ORTHO05D006760 2.7e-17 91.7 76 64.5
FvH4_5g10930 Fragaria vesca HOM05D005517 ORTHO05D006760 2.7e-17 91.7 79 73.4
FAN08G0577 Fragaria x ananassa HOM05D005517 ORTHO05D006760 2.7e-17 91.7 79 73.4
FAN13G3313 Fragaria x ananassa HOM05D005517 ORTHO05D006760 2.7e-17 91.7 79 73.4
FAN18G2496 Fragaria x ananassa HOM05D005517 ORTHO05D006760 2.7e-17 91.7 79 73.4
PGSC0003DMG402020250 Solanum tuberosum HOM05D005517 ORTHO05D006760 2.7e-17 91.7 76 67.1
Gohir.D04G075800 Gossypium hirsutum HOM05D005517 ORTHO05D006760 3.5e-17 91.3 69 76.8
PSO210G3561 Papaver somniferum HOM05D005517 ORTHO05D006760 3.5e-17 91.3 76 63.2
CDE08G1355 Ceratophyllum demersum HOM05D005517 ORTHO05D006760 4.6e-17 90.9 77 67.5
COL.COLO4_13282 Corchorus olitorius HOM05D005517 ORTHO05D006760 4.6e-17 90.9 68 79.4
HanXRQChr02g0035131 Helianthus annuus HOM05D005517 ORTHO05D006760 4.6e-17 90.9 73 68.5
Sopen02g038880 Solanum pennellii HOM05D005517 ORTHO05D006760 4.6e-17 90.9 76 67.1
TWI34G0084 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 4.6e-17 90.9 76 71.1
TWI34G1158 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 4.6e-17 90.9 76 71.1
BcaB01g06344 Brassica carinata HOM05D005517 ORTHO05D006760 6.0e-17 90.5 73 68.5
BcaB08g36959 Brassica carinata HOM05D005517 ORTHO05D006760 6.0e-17 90.5 73 67.1
Nitab4.5_0007375g0080 Nicotiana tabacum HOM05D005517 ORTHO05D006760 6.0e-17 90.5 76 65.8
Lsat_1_v5_gn_1_29421 Lactuca sativa HOM05D005517 ORTHO05D006760 1.0e-16 89.7 73 67.1
MBI06_g06692_MAGBIO Magnolia biondii HOM05D005517 ORTHO05D006760 1.0e-16 89.7 76 71.1
Medtr3g007670 Medicago truncatula HOM05D005517 ORTHO05D006760 1.0e-16 89.7 77 70.1
Rhsim08G0041900 Rhododendron simsii HOM05D005517 ORTHO05D006760 1.3e-16 89.4 76 67.1
BcaC03g13514 Brassica carinata HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 67.1
BcaC03g13515 Brassica carinata HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 67.1
BcaNung06018 Brassica carinata HOM05D005517 ORTHO05D006760 1.7e-16 89.0 73 67.1
Hund05668 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.7e-16 89.0 77 64.9
A02p02340 Brassica napus HOM05D005517 ORTHO05D006760 2.3e-16 88.6 73 67.1
BraA02t05205Z Brassica rapa HOM05D005517 ORTHO05D006760 2.3e-16 88.6 73 67.1
Hma1.2p1_1057F.1_g252720 Hydrangea macrophylla HOM05D005517 ORTHO05D006760 3.0e-16 88.2 76 67.1
QL02p071008 Quercus lobata HOM05D005517 ORTHO05D006760 3.9e-16 87.8 64 76.6
TPR.G30072 Trifolium pratense HOM05D005517 ORTHO05D006760 3.9e-16 87.8 76 65.8
TWI60G0382 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 3.9e-16 87.8 76 68.4
Aa31LG11G14910 Aethionema arabicum HOM05D005517 ORTHO05D006760 5.1e-16 87.4 73 68.5
Rhsim10G0005200 Rhododendron simsii HOM05D005517 ORTHO05D006760 5.1e-16 87.4 76 65.8
CSS0038475 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 6.6e-16 87.0 77 66.2
AUR62006995 Chenopodium quinoa HOM05D005517 ORTHO05D006760 6.6e-16 87.0 75 64.0
QL10p050767 Quercus lobata HOM05D005517 ORTHO05D006760 8.6e-16 86.7 68 73.5
Aa31LG5G11080 Aethionema arabicum HOM05D005517 ORTHO05D006760 1.1e-15 86.3 70 72.9
SEGI_12962 Sequoiadendron giganteum HOM05D005517 ORTHO05D006760 1.1e-15 86.3 77 62.3
MD06G1118400 Malus domestica HOM05D005517 ORTHO05D006760 1.5e-15 85.9 76 71.1
Hund07167 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.5e-15 85.9 75 62.7
EL10Ac7g18130 Beta vulgaris HOM05D005517 ORTHO05D006760 1.9e-15 85.5 75 65.3
CiPaw.04G038900 Carya illinoinensis HOM05D005517 ORTHO05D006760 1.9e-15 85.5 69 72.5
ECA232G0857 Erigeron canadensis HOM05D005517 ORTHO05D006760 1.9e-15 85.5 73 64.4
THA.LOC104814182 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 1.9e-15 85.5 50 90.0
Lsat_1_v5_gn_4_78980 Lactuca sativa HOM05D005517 ORTHO05D006760 2.5e-15 85.1 73 65.8
AUR62000640 Chenopodium quinoa HOM05D005517 ORTHO05D006760 4.3e-15 84.3 69 65.2
Thhalv10021865m.g Eutrema salsugineum HOM05D005517 ORTHO05D006760 5.6e-15 84.0 75 66.7
HanXRQChr16g0497941 Helianthus annuus HOM05D005517 ORTHO05D006760 7.3e-15 83.6 73 63.0
MD14G1126500 Malus domestica HOM05D005517 ORTHO05D006760 7.3e-15 83.6 77 66.2
C02p06560 Brassica napus HOM05D005517 ORTHO05D006760 9.5e-15 83.2 73 65.8
Ca_14034_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 9.5e-15 83.2 69 68.1
BcaC03g13513 Brassica carinata HOM05D005517 ORTHO05D006760 1.2e-14 82.8 72 63.9
Sabra16G0209900 Salix brachista HOM05D005517 ORTHO05D006760 1.6e-14 82.4 136 44.1
Phvul.009G125500 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 4.7e-14 80.9 53 79.2
arahy.Tifrunner.gnm1.ann1.9JMW1H Arachis hypogaea HOM05D005517 ORTHO05D006760 6.2e-14 80.5 51 84.3
Haze_14891 Corylus avellana HOM05D005517 ORTHO05D006760 2.4e-13 78.6 141 42.6
Prupe.2G009500 Prunus persica HOM05D005517 ORTHO05D006760 2.4e-13 78.6 76 68.4
Peaxi162Scf00064g01122 Petunia axillaris HOM05D005517 ORTHO05D006760 1.2e-12 76.3 57 70.2
AagrBONN_evm.TU.Sc2ySwM_228.2988 Anthoceros agrestis HOM05D005517 ORTHO05D006760 1.9e-10 68.9 76 52.6
TPR.G36037 Trifolium pratense HOM05D005517 ORTHO05D006760 4.1e-10 67.8 50 70.0
vmacro05969 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 5.4e-10 67.4 68 55.9
Cc02_g28320 Coffea canephora HOM05D005517 ORTHO05D006760 1.2e-09 66.2 60 58.3
Os03g0733000 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 2.7e-09 65.1 78 51.3
Mapoly0055s0070 Marchantia polymorpha HOM05D005517 ORTHO05D006760 2.3e-08 62.0 76 50.0
Sed0001513 Sechium edule HOM05D005517 ORTHO05D006760 7.3e-07 57.0 128 39.8
Pp3c1_33450 Physcomitrium patens HOM05D005517 ORTHO05D006760 1.6e-06 55.8 76 48.7


User provided reference genes

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