Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 2332.8 1209 100.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1804.6 1207 76.3
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1802.7 1210 76.8
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1780.0 1207 75.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1773.4 1212 74.5
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1770.0 1205 74.9
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1767.3 1202 75.9
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1766.9 1205 74.9
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1763.0 1206 74.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1763.0 1207 75.1
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1761.1 1205 74.4
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1756.9 1208 74.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1756.5 1205 74.4
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1751.5 1202 75.2
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1747.3 1207 74.5
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1744.9 1201 74.4
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1739.2 1212 73.7
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1738.4 1207 73.6
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1730.7 1208 72.6
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1729.1 1207 73.2
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1706.8 1205 72.7
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1704.5 1209 71.6
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1700.6 1207 72.9
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1691.8 1205 72.0
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1688.7 1205 71.8
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1687.5 1207 72.7
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1687.2 1205 71.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1687.2 1205 72.2
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1685.6 1205 71.6
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1685.6 1178 72.3
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1685.6 1170 73.4
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1682.5 1205 71.5
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1679.1 1210 71.1
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1674.1 1201 71.5
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1673.7 1215 70.9
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1666.7 1206 71.3
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1663.7 1206 71.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1657.5 1209 70.1
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1652.9 1224 69.5
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1651.0 1162 71.9
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1651.0 1208 69.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1648.6 1201 70.8
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1647.5 1207 70.8
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1647.1 1182 72.0
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1644.0 1205 71.0
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1640.6 1207 70.4
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1638.6 1212 70.3
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1637.1 1210 68.6
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1634.4 1205 69.4
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1629.4 1209 70.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1613.6 1205 68.3
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1607.8 1201 69.1
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1602.0 1205 68.0
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1599.7 1205 68.0
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1599.3 1202 69.0
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1596.6 1210 67.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1594.3 1209 67.4
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1593.2 1206 67.8
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1590.9 1206 67.8
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1590.9 1169 69.5
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1590.5 1207 67.2
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1589.7 1207 67.9
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1585.1 1213 66.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1581.2 1203 68.2
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1580.8 1209 66.6
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1580.8 1202 68.1
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1578.5 1210 66.8
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1577.0 1206 68.0
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1573.9 1207 66.5
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1564.7 1209 67.4
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1563.5 1122 71.0
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1561.2 1206 66.1
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1559.7 1205 66.1
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1558.1 1203 67.7
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1558.1 1205 66.6
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1545.8 1191 66.5
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1545.8 1185 66.8
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1535.8 1206 67.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1529.2 1205 66.9
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1527.7 1207 65.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1526.5 1262 64.0
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1520.8 1185 66.4
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1517.3 1209 65.7
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1515.0 1191 65.4
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1511.9 1207 65.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1511.5 1219 64.1
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1509.6 1191 65.7
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1498.4 1201 64.8
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1478.0 1209 63.8
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1439.5 1209 62.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1417.9 1143 64.3
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1391.3 986 72.2
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1390.9 1021 68.6
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1387.5 1146 63.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1377.5 1216 61.8
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1376.3 1294 59.0
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1374.0 1183 60.7
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1363.2 1205 59.2
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1336.6 1206 57.5
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1297.0 1226 56.6
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1227.2 1054 62.0
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1147.1 892 65.7
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1144.4 963 63.9
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1134.0 824 71.0
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1116.7 836 70.9
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 4.1e-309 1065.1 1153 53.6
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.8e-261 906.7 1231 42.9
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.1e-257 893.3 1232 42.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 4.4e-255 885.6 1227 43.3
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.7e-254 883.6 1189 45.8
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 3.5e-252 875.9 652 69.2
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.1e-245 854.4 1159 45.2
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.5e-242 844.0 1159 44.6
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 7.1e-237 825.1 1176 44.6
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.2e-228 797.7 1046 46.5
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 5.6e-226 788.9 1185 39.2
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.0e-219 768.1 797 52.3
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.4e-205 721.1 601 63.4
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 2.7e-204 716.8 1224 36.6
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.8e-199 699.1 572 63.8
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.5e-190 668.7 637 54.5
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.9e-184 649.0 541 62.5
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 8.2e-169 599.0 471 67.3
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 9.7e-162 575.5 416 70.9
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.9e-149 534.6 479 56.6
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 7.1e-120 436.4 321 72.0
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.5e-106 392.1 297 70.0
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 8.4e-81 306.6 1396 23.8
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 4.2e-72 277.7 210 68.1
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.1e-71 273.9 267 52.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 3.3e-69 268.1 210 65.2
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.3e-65 256.1 187 73.8
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 2.1e-55 222.2 235 54.0
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.3e-49 203.0 479 32.4
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 6.1e-47 194.1 461 31.2
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.3e-38 165.6 109 78.9
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 4.0e-38 164.9 1177 21.4
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 1.3e-25 123.2 96 68.8
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 3.3e-16 92.0 86 58.1
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.2e-15 90.1 371 28.0
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 6.2e-15 87.8 73 58.9
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 2.3e-14 85.9 172 39.0
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.2e-13 83.6 73 61.6
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 4.4e-13 81.6 79 57.0
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.7e-12 79.7 63 66.7
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 6.4e-12 77.8 50 78.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 6.4e-12 77.8 50 78.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 2.4e-11 75.9 80 53.8
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 2.7e-10 72.4 63 65.1
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 7.8e-10 70.9 76 50.0
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.3e-09 70.1 65 61.5
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 3.9e-09 68.6 65 60.0
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.2e-07 63.5 317 23.0
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 1.6e-07 63.2 62 54.8
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.1e-07 62.8 71 47.9
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 4.0e-06 58.5 115 30.4
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 8.9e-06 57.4 48 56.2


User provided reference genes

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