Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.0e-166 590.1 324 100.0
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.8e-139 499.6 327 74.3
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 2.2e-137 492.7 321 74.5
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 5.0e-137 491.5 332 71.7
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.5e-136 489.2 332 71.4
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.2e-136 488.8 324 76.5
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 1.2e-135 486.9 323 76.8
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.1e-135 486.1 323 75.5
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.1e-135 486.1 319 73.7
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 4.6e-135 485.0 324 81.2
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.1e-134 481.5 320 71.2
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 6.7e-134 481.1 335 71.0
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.5e-133 479.9 324 71.9
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.5e-133 479.9 319 72.7
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 2.0e-133 479.6 320 72.5
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 3.3e-133 478.8 262 82.4
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.3e-133 478.8 324 71.9
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 4.3e-133 478.4 324 76.2
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.3e-132 476.9 320 71.6
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.7e-132 476.5 263 82.9
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.7e-132 476.5 319 72.7
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 2.8e-132 475.7 262 84.4
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 2.8e-132 475.7 253 86.2
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 2.8e-132 475.7 323 71.5
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.7e-132 475.3 320 71.2
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.8e-132 474.9 318 71.4
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.3e-132 474.6 326 70.9
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.3e-132 474.6 329 71.7
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 8.2e-132 474.2 263 81.7
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 8.2e-132 474.2 262 84.4
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 8.2e-132 474.2 261 83.1
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.1e-131 473.8 333 72.4
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.4e-131 473.4 322 71.7
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.4e-131 473.4 323 70.3
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.8e-131 473.0 263 82.5
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.1e-131 472.2 261 82.8
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.1e-131 472.2 329 69.6
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.1e-131 472.2 319 79.6
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.1e-131 472.2 319 79.6
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 4.1e-131 471.9 261 82.0
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 4.1e-131 471.9 332 69.3
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 4.1e-131 471.9 261 82.4
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.3e-131 471.5 325 70.2
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.3e-131 471.5 325 70.2
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 5.3e-131 471.5 326 80.7
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.9e-131 471.1 326 70.2
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 9.1e-131 470.7 318 75.5
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.2e-130 470.3 323 71.8
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.2e-130 470.3 329 71.7
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 1.2e-130 470.3 262 82.1
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 2.0e-130 469.5 337 73.6
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.0e-130 469.5 321 70.4
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.6e-130 469.2 337 76.0
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.6e-130 469.2 262 81.7
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 3.4e-130 468.8 262 82.4
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.4e-130 468.8 262 82.8
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 3.4e-130 468.8 262 82.4
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.5e-130 468.4 262 83.2
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 4.5e-130 468.4 320 71.6
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 7.7e-130 467.6 261 81.6
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.0e-129 467.2 282 77.7
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.0e-129 467.2 262 82.1
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 2.2e-129 466.1 262 82.1
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 2.2e-129 466.1 262 81.7
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.9e-129 465.7 260 82.3
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 5.0e-129 464.9 323 69.3
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 8.5e-129 464.2 323 70.0
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 2.5e-128 462.6 321 70.1
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 2.5e-128 462.6 324 76.5
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 2.5e-128 462.6 318 69.8
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 4.2e-128 461.8 321 71.7
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 5.5e-128 461.5 322 70.2
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 7.2e-128 461.1 321 70.1
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 9.4e-128 460.7 320 69.4
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.2e-127 460.3 260 81.2
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.6e-127 459.9 326 69.0
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.6e-127 459.9 321 69.8
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.6e-127 459.9 312 72.1
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 2.1e-127 459.5 321 69.8
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 3.6e-127 458.8 319 68.3
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.6e-127 458.8 260 81.2
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 3.6e-127 458.8 259 81.5
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 4.7e-127 458.4 323 68.7
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 4.7e-127 458.4 321 69.5
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.8e-126 456.4 320 68.8
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 2.3e-126 456.1 323 69.0
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.3e-126 456.1 261 81.2
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 3.0e-126 455.7 323 68.7
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 3.9e-126 455.3 264 80.3
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 8.8e-126 454.1 330 68.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.5e-125 453.4 238 87.4
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 2.0e-125 453.0 323 68.4
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 2.0e-125 453.0 323 68.4
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.0e-125 453.0 318 69.2
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 2.6e-125 452.6 318 69.2
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 5.7e-125 451.4 321 68.5
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 5.7e-125 451.4 323 67.2
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 9.7e-125 450.7 263 78.7
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.2e-124 449.5 261 78.9
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.8e-124 449.1 323 67.8
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 4.8e-124 448.4 238 85.7
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 4.8e-124 448.4 323 66.9
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-123 447.2 321 68.2
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.1e-123 447.2 320 72.8
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.1e-123 447.2 319 68.0
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.8e-123 446.4 262 78.6
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.8e-123 446.4 322 67.4
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 4.1e-123 445.3 318 67.6
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 7.0e-123 444.5 327 67.6
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 1.2e-122 443.7 320 67.5
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 1.2e-122 443.7 320 67.5
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.5e-122 443.4 327 67.3
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-122 443.0 323 67.2
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.9e-121 439.1 323 65.6
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 5.5e-120 434.9 259 78.8
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.5e-117 426.8 233 84.5
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.4e-115 420.2 267 73.0
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 9.1e-115 417.5 266 72.9
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.7e-113 413.3 264 72.7
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.2e-111 407.1 215 84.2
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.2e-111 407.1 318 59.7
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 6.1e-111 404.8 243 80.7
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 5.2e-110 401.7 216 83.8
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.6e-109 399.4 217 83.9
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.4e-109 398.7 216 83.8
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.7e-108 396.7 216 82.4
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.1e-107 394.0 265 69.8
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 5.3e-107 391.7 224 81.2
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.3e-105 387.1 266 68.8
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.5e-104 383.6 208 85.6
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 4.0e-102 375.6 263 68.8
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 2.8e-100 369.4 214 77.6
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 5.5e-96 355.1 294 67.3
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 9.5e-96 354.4 261 64.4
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.5e-93 347.1 268 64.6
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.7e-84 317.0 233 63.9
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.8e-78 297.0 233 66.5
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.6e-77 293.1 159 84.9
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 6.0e-74 282.0 154 82.5
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 1.2e-69 267.7 176 72.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-69 267.3 216 63.0
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 3.0e-65 253.1 204 63.2
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 1.5e-64 250.8 148 76.4
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 4.0e-62 242.7 203 61.6
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.6e-61 240.0 217 63.6
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 6.2e-55 218.8 127 79.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.9e-51 207.2 147 66.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 1.3e-36 157.9 135 60.0
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 8.8e-17 92.0 82 57.3
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 6.9e-14 82.4 49 71.4
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 1.3e-12 78.2 63 60.3
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 8.5e-12 75.5 112 44.6
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 2.5e-11 73.9 108 43.5


User provided reference genes

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