Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 0.0e+00 1457.6 727 100.0
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 0.0e+00 1260.4 730 87.5
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.2e-284 983.0 729 65.4
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 3.3e-282 974.9 730 65.2
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.5e-279 966.1 729 65.4
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.8e-278 961.4 729 65.3
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 1.9e-277 959.1 729 65.3
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 7.2e-277 957.2 725 64.4
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 9.4e-277 956.8 730 65.2
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 2.1e-276 955.7 730 65.2
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 2.1e-276 955.7 730 64.1
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.0e-275 953.4 729 65.0
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 3.9e-275 951.4 732 63.8
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.5e-274 949.5 725 62.8
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 1.9e-274 949.1 731 64.0
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 2.8e-273 945.3 729 63.8
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 4.1e-272 941.4 729 64.1
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 1.2e-271 939.9 672 68.8
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 4.5e-271 937.9 739 63.3
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.9e-269 932.6 765 60.9
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 4.2e-269 931.4 740 62.2
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 3.6e-268 928.3 730 61.6
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 2.3e-267 925.6 710 63.4
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 3.0e-267 925.2 761 60.2
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 3.9e-267 924.9 735 62.6
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 5.1e-267 924.5 725 62.1
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 8.8e-267 923.7 735 62.3
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.6e-266 922.2 735 61.9
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 4.8e-265 917.9 727 61.8
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 3.1e-264 915.2 743 61.0
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.5e-263 912.9 725 61.4
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.5e-263 912.9 729 61.2
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 1.5e-263 912.9 727 61.8
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 4.5e-263 911.4 726 61.0
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 5.9e-263 911.0 729 61.5
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 1.0e-262 910.2 729 61.5
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 1.3e-262 909.8 725 61.1
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 5.5e-261 904.4 727 60.2
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.2e-260 903.3 728 60.4
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 1.6e-260 902.9 726 60.3
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 8.0e-260 900.6 728 60.2
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 1.1e-258 896.7 726 60.3
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 2.6e-258 895.6 726 59.6
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 5.7e-258 894.4 740 61.2
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 9.7e-258 893.6 732 59.7
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 2.8e-257 892.1 731 59.8
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 2.4e-256 889.0 726 58.8
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 1.2e-255 886.7 730 60.3
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.5e-255 884.8 733 59.5
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 5.9e-255 884.4 729 60.9
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 7.7e-255 884.0 730 60.4
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 3.8e-254 881.7 725 58.8
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 6.5e-254 880.9 730 60.0
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 8.5e-254 880.6 727 60.0
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 2.5e-253 879.0 725 59.4
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.6e-252 876.3 727 58.3
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 2.1e-252 875.9 728 59.3
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 8.0e-252 874.0 733 58.8
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 8.0e-252 874.0 735 58.8
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 1.0e-251 873.6 726 59.4
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 1.2e-250 870.2 745 58.3
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.2e-250 870.2 725 58.1
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 9.7e-250 867.1 790 55.4
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 1.2e-247 860.1 726 58.0
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 3.5e-247 858.6 729 58.3
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 1.5e-245 853.2 726 58.7
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 2.5e-245 852.4 692 61.3
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 3.6e-236 822.0 729 56.7
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 1.6e-231 806.6 710 56.2
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 8.6e-230 800.8 656 60.5
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.9e-229 799.7 719 55.5
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.4e-227 793.5 726 55.9
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 3.1e-227 792.3 751 53.8
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 6.4e-225 784.6 607 62.1
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 1.6e-223 780.0 726 54.0
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 2.3e-222 776.2 605 62.1
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 8.6e-222 774.2 729 54.3
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 4.3e-221 771.9 673 57.8
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 8.9e-219 764.2 607 61.0
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.5e-218 763.5 726 53.7
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 3.7e-217 758.8 735 53.3
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 3.5e-215 752.3 622 61.4
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.5e-213 746.9 732 53.1
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 5.2e-211 738.4 768 51.7
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.2e-207 727.2 823 49.6
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 4.3e-205 718.8 634 58.7
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 7.3e-205 718.0 732 49.7
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 2.6e-202 709.5 500 68.2
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.0e-198 697.6 636 55.5
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 9.6e-189 664.5 730 48.8
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.7e-185 653.7 494 63.6
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.8e-185 652.5 619 54.4
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.6e-183 647.1 621 51.5
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 2.1e-180 636.7 624 52.1
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 9.6e-173 611.3 454 63.7
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.8e-171 607.1 455 63.7
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 1.4e-160 570.9 736 42.9
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.7e-159 566.6 525 56.0
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 1.2e-154 551.2 738 43.4
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 3.5e-146 523.1 417 61.6
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 1.1e-144 518.1 608 46.4
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.3e-132 475.7 581 43.7
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 4.5e-130 469.5 840 36.5
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 3.7e-124 449.9 634 43.8
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 7.2e-120 435.6 428 52.1
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 9.8e-117 425.2 288 75.0
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 5.9e-114 416.0 383 56.4
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.4e-109 400.2 540 41.7
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.9e-104 384.4 533 40.7
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 2.8e-103 380.6 350 56.3
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.7e-95 353.2 469 42.2
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 7.8e-82 309.3 222 64.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 7.1e-75 286.2 232 64.2
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 5.6e-64 250.0 641 31.0
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.3e-55 222.2 129 71.3
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 1.6e-55 221.9 256 44.9
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.2e-53 215.7 317 41.3
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.0e-52 212.6 188 55.9
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.3e-52 212.2 104 98.1
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 7.2e-51 206.5 144 69.4
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 3.5e-50 204.1 286 36.4
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.2e-42 179.1 222 45.9
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.7e-41 173.3 126 62.7
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 6.5e-36 156.8 126 59.5
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.8e-33 148.7 113 58.4
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 9.7e-32 142.9 105 63.8
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 4.8e-23 114.0 113 47.8
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.0e-20 104.0 112 50.0
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.2e-18 99.4 82 54.9
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 2.7e-18 98.2 81 55.6
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 3.5e-13 81.3 132 37.1
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 4.5e-13 80.9 60 55.0
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 3.0e-09 68.2 297 25.6
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 3.0e-09 68.2 60 50.0
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 3.0e-09 68.2 43 67.4
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 5.2e-09 67.4 42 64.3
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 5.2e-09 67.4 90 45.6
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 4.4e-08 64.3 75 44.0
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 3.7e-07 61.2 76 47.4
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 2.4e-06 58.5 43 55.8
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 4.1e-06 57.8 39 61.5


User provided reference genes

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