Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.3e-122 442.2 219 100.0
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.9e-88 328.2 244 68.9
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.1e-87 327.0 240 70.0
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 7.4e-76 287.7 243 61.7
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 9.0e-74 280.8 219 64.8
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 1.5e-73 280.0 248 59.3
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 2.0e-73 279.6 246 60.6
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 3.4e-73 278.9 243 60.1
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 3.4e-73 278.9 241 58.5
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 5.8e-73 278.1 239 59.8
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 5.8e-73 278.1 246 58.5
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.6e-73 277.7 243 59.7
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.7e-72 276.6 243 59.7
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.7e-72 276.6 239 59.4
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 2.2e-72 276.2 251 59.8
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 2.9e-72 275.8 241 59.3
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 3.8e-72 275.4 248 59.3
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.8e-72 275.4 243 59.3
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 1.1e-71 273.9 239 58.6
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 1.1e-71 273.9 239 58.6
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.9e-71 273.1 229 62.0
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 5.5e-71 271.6 239 57.7
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 5.5e-71 271.6 232 60.3
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 7.1e-71 271.2 241 58.9
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 7.1e-71 271.2 223 61.9
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 9.3e-71 270.8 244 60.2
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 6.0e-70 268.1 237 57.8
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.0e-69 267.3 223 60.5
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.3e-69 266.9 219 61.6
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 2.3e-69 266.2 225 60.9
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 3.9e-69 265.4 221 62.9
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 3.9e-69 265.4 224 58.0
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 5.1e-69 265.0 223 61.9
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 5.1e-69 265.0 223 60.5
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 6.7e-69 264.6 219 62.1
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 8.7e-69 264.2 230 59.6
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.5e-68 263.5 246 57.7
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 1.9e-68 263.1 230 58.3
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 1.9e-68 263.1 230 58.3
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.9e-68 263.1 222 59.9
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 2.5e-68 262.7 227 59.0
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 2.5e-68 262.7 231 58.0
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 3.3e-68 262.3 231 57.6
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 3.3e-68 262.3 227 59.0
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 5.6e-68 261.5 227 58.6
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 7.4e-68 261.2 218 61.5
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 7.4e-68 261.2 246 56.9
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 9.6e-68 260.8 224 59.8
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.3e-67 260.4 232 57.3
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.3e-67 260.4 241 57.3
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 2.1e-67 259.6 210 61.9
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 4.8e-67 258.5 215 60.0
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 8.1e-67 257.7 228 59.2
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 1.1e-66 257.3 254 55.1
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 1.4e-66 256.9 225 58.7
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 1.4e-66 256.9 216 60.2
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 3.1e-66 255.8 245 56.7
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 4.0e-66 255.4 224 58.5
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 4.0e-66 255.4 219 59.8
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 4.0e-66 255.4 231 57.1
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 4.0e-66 255.4 236 56.8
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 1.5e-65 253.4 233 58.8
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 2.0e-65 253.1 230 57.8
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 2.0e-65 253.1 241 54.8
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 2.6e-65 252.7 245 54.7
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.6e-65 252.7 220 57.7
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 7.6e-65 251.1 225 58.2
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 7.6e-65 251.1 232 56.0
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.0e-64 250.8 237 58.2
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 1.3e-64 250.4 232 59.1
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 1.7e-64 250.0 229 57.2
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 1.7e-64 250.0 226 56.6
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 2.9e-64 249.2 242 55.8
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 2.9e-64 249.2 228 57.9
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 3.8e-64 248.8 220 56.8
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 6.5e-64 248.1 220 56.4
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.1e-63 247.3 226 55.8
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 1.1e-63 247.3 246 52.8
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.4e-63 246.9 229 56.3
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.9e-63 246.5 217 59.0
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.2e-63 245.7 232 55.2
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 4.2e-63 245.4 253 52.6
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 4.2e-63 245.4 222 57.2
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 7.1e-63 244.6 217 57.6
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 7.1e-63 244.6 217 57.6
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 9.3e-63 244.2 217 57.6
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.3e-63 244.2 310 46.5
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.2e-62 243.8 225 54.2
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 1.2e-62 243.8 218 58.3
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 1.6e-62 243.4 258 52.7
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.1e-62 243.0 220 56.8
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 6.0e-62 241.5 257 53.7
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 1.3e-61 240.4 229 55.0
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.8e-61 240.0 228 54.8
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 3.0e-61 239.2 211 57.3
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 3.9e-61 238.8 220 55.9
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 6.7e-61 238.0 225 56.0
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 5.7e-60 235.0 252 50.0
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 5.7e-60 235.0 206 57.3
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 5.7e-60 235.0 221 54.3
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 9.6e-60 234.2 222 55.0
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 9.6e-60 234.2 219 56.2
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 4.8e-59 231.9 225 54.7
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 8.2e-59 231.1 227 54.6
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 1.4e-58 230.3 237 53.6
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 2.4e-58 229.6 218 54.1
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 1.7e-56 223.4 229 51.5
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.1e-55 220.7 229 49.8
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.4e-55 220.3 217 55.8
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 4.6e-54 215.3 193 57.5
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 1.6e-51 206.8 245 52.2
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 8.2e-51 204.5 382 35.9
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.5e-49 200.3 216 51.9
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.5e-48 194.9 199 54.3
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 5.1e-45 185.3 216 44.9
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 6.7e-45 184.9 224 47.8
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.0e-44 183.3 210 51.4
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 5.7e-44 181.8 213 49.3
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 8.2e-43 177.9 194 51.5
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.2e-41 174.1 137 62.0
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.1e-39 167.5 206 47.6
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 1.9e-39 166.8 154 54.5
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 1.5e-36 157.1 195 48.2
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 1.5e-36 157.1 128 54.7
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 2.6e-36 156.4 149 55.0
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 2.4e-34 149.8 128 53.9
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 4.1e-34 149.1 165 44.8
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.5e-33 146.0 170 46.5
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 1.3e-32 144.1 135 52.6
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 7.2e-31 138.3 165 47.9
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 9.4e-31 137.9 152 47.4
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 1.5e-23 114.0 141 37.6
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 8.0e-22 108.2 203 33.5
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.2e-17 94.4 102 53.9
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 4.2e-15 85.9 105 51.4
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 1.6e-14 84.0 62 61.3
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 1.0e-13 81.3 94 54.3
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 2.6e-12 76.6 86 43.0
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 1.8e-10 70.5 70 55.7
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.4e-10 70.1 89 51.7
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.3e-08 64.3 61 50.8


User provided reference genes

Program Settings