Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.3e-217 758.1 381 100.0
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.9e-143 513.1 260 97.3
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.5e-137 491.9 306 84.3
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 3.8e-104 382.5 258 72.1
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.0e-101 374.4 215 82.3
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 2.3e-101 373.2 224 79.5
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 3.9e-101 372.5 263 69.2
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 3.9e-101 372.5 263 69.2
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 6.7e-101 371.7 265 70.2
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 6.7e-101 371.7 238 74.8
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 2.0e-100 370.2 237 75.5
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 3.3e-100 369.4 256 71.1
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 3.3e-100 369.4 226 78.8
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 4.4e-100 369.0 274 68.2
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 3.7e-99 365.9 245 73.9
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 6.3e-99 365.2 251 71.7
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 8.2e-99 364.8 263 70.0
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 1.1e-98 364.4 265 69.1
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-98 364.0 263 70.0
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.4e-98 364.0 266 68.8
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.8e-98 363.6 272 68.4
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.4e-98 363.2 261 67.8
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 5.3e-98 362.1 223 77.1
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 5.3e-98 362.1 216 79.2
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 9.1e-98 361.3 265 68.3
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 1.2e-97 360.9 260 70.0
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 1.2e-97 360.9 249 71.5
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 1.6e-97 360.5 220 77.7
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 1.6e-97 360.5 283 64.0
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 2.6e-97 359.8 249 70.7
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.6e-97 359.8 263 69.2
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 2.6e-97 359.8 240 75.4
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 4.5e-97 359.0 266 66.2
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 4.5e-97 359.0 260 69.2
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 1.3e-96 357.5 229 74.7
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 1.7e-96 357.1 248 72.2
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 2.2e-96 356.7 221 76.9
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.2e-96 356.7 275 65.1
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 3.8e-96 355.9 245 71.0
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 3.8e-96 355.9 215 77.7
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 3.8e-96 355.9 253 69.6
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 6.5e-96 355.1 274 66.4
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 6.5e-96 355.1 280 62.9
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 8.5e-96 354.8 225 75.6
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 1.5e-95 354.0 247 70.4
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 1.9e-95 353.6 263 66.2
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 1.9e-95 353.6 226 74.8
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 3.2e-95 352.8 232 74.6
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 3.2e-95 352.8 263 66.9
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 7.2e-95 351.7 268 68.3
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 9.4e-95 351.3 219 74.0
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 1.6e-94 350.5 257 68.1
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 1.6e-94 350.5 243 70.4
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 2.1e-94 350.1 280 62.5
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 2.7e-94 349.7 228 73.7
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 2.7e-94 349.7 225 75.6
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 4.7e-94 349.0 244 71.7
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 8.0e-94 348.2 229 72.9
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 1.4e-93 347.4 227 73.6
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 1.8e-93 347.1 281 63.7
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 2.3e-93 346.7 239 69.0
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 3.0e-93 346.3 224 73.7
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 3.0e-93 346.3 219 73.1
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 4.0e-93 345.9 285 63.9
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 5.2e-93 345.5 259 65.3
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 8.8e-93 344.7 259 65.3
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.2e-92 344.4 216 75.5
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 2.0e-92 343.6 222 75.2
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 2.0e-92 343.6 236 69.9
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 2.6e-92 343.2 232 70.7
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 9.7e-92 341.3 267 63.7
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 1.3e-91 340.9 254 65.7
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 2.2e-91 340.1 255 66.7
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 2.8e-91 339.7 226 72.1
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 3.7e-91 339.3 220 71.8
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 6.3e-91 338.6 257 67.7
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 8.3e-91 338.2 252 65.1
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.8e-90 337.0 259 63.7
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 1.8e-90 337.0 218 75.2
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.4e-90 336.7 259 63.7
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 2.4e-90 336.7 226 70.4
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.4e-90 336.7 208 75.5
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 3.1e-90 336.3 249 65.5
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 4.1e-90 335.9 250 67.2
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 7.0e-90 335.1 304 57.6
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 7.0e-90 335.1 264 63.6
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 7.0e-90 335.1 213 73.2
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 9.1e-90 334.7 266 62.8
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 9.1e-90 334.7 259 64.9
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 1.6e-89 334.0 236 69.1
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 2.7e-89 333.2 227 70.5
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 2.9e-88 329.7 240 66.2
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 3.8e-88 329.3 281 61.2
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 5.0e-88 328.9 330 55.2
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 6.5e-88 328.6 261 62.8
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 6.5e-88 328.6 214 71.5
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 1.1e-87 327.8 253 63.6
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 1.5e-87 327.4 214 71.0
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 1.5e-87 327.4 214 71.0
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 1.9e-87 327.0 265 61.1
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 7.2e-87 325.1 249 63.9
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.6e-86 323.9 240 70.0
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 1.6e-86 323.9 219 70.3
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.6e-86 323.9 221 70.1
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 1.0e-85 321.2 214 70.6
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 8.8e-85 318.2 284 59.5
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 2.0e-84 317.0 238 67.2
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 3.7e-83 312.8 237 64.6
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.1e-82 311.2 226 64.2
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 3.0e-77 293.1 191 75.4
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.3e-75 287.7 409 43.5
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 2.7e-73 280.0 184 73.4
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.9e-72 276.6 236 61.9
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 4.3e-71 272.7 203 68.0
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 4.7e-70 269.2 285 54.4
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 1.4e-66 257.7 209 59.3
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 1.9e-66 257.3 259 56.8
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.9e-66 257.3 255 56.9
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 7.8e-65 251.9 164 75.6
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 5.6e-63 245.7 244 55.3
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.0e-60 237.3 221 55.7
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 8.3e-59 231.9 261 49.8
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 3.2e-58 229.9 129 78.3
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 4.1e-58 229.6 167 65.3
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 7.1e-58 228.8 162 64.2
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 3.5e-57 226.5 122 77.0
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 7.8e-57 225.3 136 75.0
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 5.4e-50 202.6 176 59.7
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 2.4e-45 187.2 170 58.8
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.7e-43 181.0 175 57.1
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 6.4e-43 179.1 126 59.5
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 2.4e-37 160.6 161 51.6
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 9.0e-37 158.7 215 39.5
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 5.8e-36 156.0 95 70.5
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 5.1e-32 142.9 90 72.2
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.3e-30 138.3 133 57.9
Eucgr.H04277 Eucalyptus grandis HOM05D005134 ORTHO05D194288 2.2e-27 127.5 124 64.5
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 2.1e-14 84.3 85 58.8
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 9.0e-13 79.0 104 51.0
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 6.1e-09 66.2 62 61.3
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.3e-08 65.1 32 84.4


User provided reference genes

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