Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 2.6e-75 287.3 172 100.0
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 1.6e-37 161.8 174 65.5
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 2.6e-35 154.5 166 47.6
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 6.4e-34 149.8 132 56.8
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 5.4e-33 146.7 132 55.3
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 7.8e-32 142.9 173 48.6
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 1.0e-31 142.5 172 47.1
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 1.7e-31 141.7 174 46.0
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.3e-31 141.4 169 60.4
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 3.9e-31 140.6 140 55.0
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 5.1e-31 140.2 167 47.9
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 5.1e-31 140.2 132 56.1
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.6e-31 139.8 169 59.8
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.6e-31 139.8 169 59.8
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 8.6e-31 139.4 169 59.8
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.5e-30 137.9 169 47.9
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 3.3e-30 137.5 175 44.6
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 3.3e-30 137.5 175 44.6
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 3.3e-30 137.5 172 59.9
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 3.3e-30 137.5 166 59.6
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 9.6e-30 136.0 152 53.3
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 3.1e-28 131.0 171 58.5
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 9.9e-27 125.9 173 42.8
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 9.9e-27 125.9 152 61.8
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 6.4e-26 123.2 134 53.0
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 1.4e-25 122.1 131 50.4
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 4.2e-25 120.6 138 50.0
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 9.3e-25 119.4 174 42.0
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 9.3e-25 119.4 174 42.0
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 9.3e-25 119.4 168 38.7
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 1.2e-24 119.0 138 50.0
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 1.2e-24 119.0 160 58.8
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.6e-24 118.6 167 43.1
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 1.6e-24 118.6 171 53.2
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 2.1e-24 118.2 135 50.4
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 2.7e-24 117.9 176 40.9
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 4.6e-24 117.1 167 42.5
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 4.6e-24 117.1 90 63.3
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 4.6e-24 117.1 176 54.0
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 6.0e-24 116.7 173 39.9
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 6.0e-24 116.7 168 39.9
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 3.9e-23 114.0 167 40.7
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 3.9e-23 114.0 167 40.7
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 3.9e-23 114.0 171 41.5
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 8.7e-23 112.8 144 48.6
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 1.1e-22 112.5 173 39.9
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 1.1e-22 112.5 131 46.6
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 2.5e-22 111.3 133 45.9
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 3.3e-22 110.9 125 48.8
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 7.3e-22 109.8 124 50.8
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 1.3e-21 109.0 136 41.9
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.6e-21 108.6 161 54.0
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 8.1e-21 106.3 135 43.7
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 8.1e-21 106.3 170 40.0
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 1.1e-20 105.9 167 40.7
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 1.4e-20 105.5 135 44.4
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 4.0e-20 104.0 178 41.0
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 6.9e-20 103.2 167 37.1
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 9.0e-20 102.8 111 70.3
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.5e-19 102.1 72 63.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 2.6e-19 101.3 145 40.7
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 2.6e-19 101.3 115 67.8
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 3.4e-19 100.9 115 67.8
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 3.4e-19 100.9 157 38.9
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 4.4e-19 100.5 110 70.0
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.4e-19 100.5 98 53.1
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 7.6e-19 99.8 131 42.7
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 9.9e-19 99.4 74 60.8
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 3.8e-18 97.4 140 42.1
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 4.9e-18 97.1 164 36.6
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 4.9e-18 97.1 164 47.0
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 8.4e-18 96.3 174 36.2
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.1e-17 95.9 132 43.2
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.1e-17 95.9 63 69.8
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 1.9e-17 95.1 178 35.4
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 2.4e-17 94.7 77 58.4
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 7.1e-17 93.2 152 51.3
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 9.3e-17 92.8 132 41.7
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 2.1e-16 91.7 69 65.2
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 2.7e-16 91.3 160 35.6
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 6.0e-16 90.1 133 39.8
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 7.8e-16 89.7 144 36.1
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 3.0e-15 87.8 139 38.8
CSS0031974 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 6.6e-15 86.7 168 36.3
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.5e-14 85.5 59 69.5
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 3.3e-14 84.3 118 41.5
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 4.3e-14 84.0 127 41.7
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 7.3e-14 83.2 128 40.6
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 1.2e-11 75.9 76 84.2
HPP92_005407 Vanilla planifolia HOM05D007620 ORTHO05D009568 2.0e-11 75.1 111 37.8
COL.COLO4_15482 Corchorus olitorius HOM05D007620 ORTHO05D009568 3.2e-09 67.8 43 72.1
ECA233G5729 Erigeron canadensis HOM05D007620 ORTHO05D009568 6.0e-08 63.5 76 44.7


User provided reference genes

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