Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04131 Eucalyptus grandis HOM05D005773 ORTHO05D006930 1.0e-169 600.1 340 100.0
Prupe.1G103600 Prunus persica HOM05D005773 ORTHO05D006930 6.3e-42 175.6 388 43.6
RcHm_v2.0_Chr4g0427881 Rosa chinensis HOM05D005773 ORTHO05D006930 2.0e-40 170.6 367 43.6
Haze_00756 Corylus avellana HOM05D005773 ORTHO05D006930 3.8e-39 166.4 382 37.7
TAR633G1051 Trochodendron aralioides HOM05D005773 ORTHO05D006930 8.5e-39 165.2 361 40.7
MD13G1156700 Malus domestica HOM05D005773 ORTHO05D006930 7.2e-38 162.2 384 39.6
FAN07G0153 Fragaria x ananassa HOM05D005773 ORTHO05D006930 9.4e-38 161.8 366 46.2
FvH4_4g21650 Fragaria vesca HOM05D005773 ORTHO05D006930 6.1e-37 159.1 364 45.1
MBI19_g30285_MAGBIO Magnolia biondii HOM05D005773 ORTHO05D006930 2.3e-36 157.1 366 40.2
QL06p014502 Quercus lobata HOM05D005773 ORTHO05D006930 2.3e-36 157.1 398 38.9
FAN17G1594 Fragaria x ananassa HOM05D005773 ORTHO05D006930 2.6e-35 153.7 357 43.7
Manes.03G212700 Manihot esculenta HOM05D005773 ORTHO05D006930 2.6e-35 153.7 318 39.0
Sabra10G0002700 Salix brachista HOM05D005773 ORTHO05D006930 5.7e-35 152.5 317 43.8
MD16G1134300 Malus domestica HOM05D005773 ORTHO05D006930 9.8e-35 151.8 380 42.4
PGR004G1534 Punica granatum HOM05D005773 ORTHO05D006930 1.3e-34 151.4 335 44.8
Potri.010G003200 Populus trichocarpa HOM05D005773 ORTHO05D006930 1.7e-34 151.0 321 42.7
Aqoxy2G02493 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 1.8e-33 147.5 385 39.2
CSS0030034 Camellia sinensis var. sinensis HOM05D005773 ORTHO05D006930 7.0e-33 145.6 290 38.3
Hund12260 Selenicereus undatus HOM05D005773 ORTHO05D006930 5.9e-32 142.5 389 34.7
Dinv24720 Davidia involucrata HOM05D005773 ORTHO05D006930 1.3e-31 141.4 390 38.2
TWI53G0973 Tripterygium wilfordii HOM05D005773 ORTHO05D006930 1.3e-31 141.4 313 45.4
Cpa.g.sc146.13 Carica papaya HOM05D005773 ORTHO05D006930 1.2e-29 134.8 317 37.2
Oeu012285.1 Olea europaea HOM05D005773 ORTHO05D006930 2.1e-29 134.0 374 35.0
Nn3g21941 Nelumbo nucifera HOM05D005773 ORTHO05D006930 4.7e-29 132.9 344 40.1
Cfa015740 Carpinus fangiana HOM05D005773 ORTHO05D006930 6.1e-29 132.5 244 40.2
Lalb_Chr13g0299011 Lupinus albus HOM05D005773 ORTHO05D006930 1.0e-28 131.7 319 40.8
Gohir.D11G109200 Gossypium hirsutum HOM05D005773 ORTHO05D006930 1.4e-28 131.3 329 36.8
Gorai.007G116800 Gossypium raimondii HOM05D005773 ORTHO05D006930 1.4e-28 131.3 332 37.0
GSVIVG01017699001 Vitis vinifera HOM05D005773 ORTHO05D006930 1.4e-28 131.3 303 36.6
Lj4g0014107 Lotus japonicus HOM05D005773 ORTHO05D006930 3.0e-28 130.2 307 40.1
CiPaw.01G128000 Carya illinoinensis HOM05D005773 ORTHO05D006930 5.2e-28 129.4 257 38.1
Rhsim04G0249100 Rhododendron simsii HOM05D005773 ORTHO05D006930 6.8e-28 129.0 380 38.4
TPR.G12556 Trifolium pratense HOM05D005773 ORTHO05D006930 6.8e-28 129.0 367 36.0
BcaB04g17451 Brassica carinata HOM05D005773 ORTHO05D006930 1.5e-27 127.9 361 35.5
Medtr4g124080 Medicago truncatula HOM05D005773 ORTHO05D006930 2.0e-27 127.5 324 42.0
Nn4g25353 Nelumbo nucifera HOM05D005773 ORTHO05D006930 3.4e-27 126.7 380 35.3
Ciclev10005574m.g Citrus clementina HOM05D005773 ORTHO05D006930 4.4e-27 126.3 267 41.9
Duzib138G1928 Durio zibethinus HOM05D005773 ORTHO05D006930 4.4e-27 126.3 329 33.4
Potri.002G187300 Populus trichocarpa HOM05D005773 ORTHO05D006930 4.4e-27 126.3 301 36.9
Gohir.A11G104400 Gossypium hirsutum HOM05D005773 ORTHO05D006930 7.5e-27 125.6 331 37.5
VMungo1215G1523 Vigna mungo HOM05D005773 ORTHO05D006930 9.8e-27 125.2 347 35.4
CANSAT78G1256 Cannabis sativa HOM05D005773 ORTHO05D006930 1.3e-26 124.8 367 38.1
Duzib133G1161 Durio zibethinus HOM05D005773 ORTHO05D006930 1.7e-26 124.4 331 34.1
Phvul.003G123000 Phaseolus vulgaris HOM05D005773 ORTHO05D006930 2.2e-26 124.0 345 39.4
Ca_21368_v3 Cicer arietinum L. HOM05D005773 ORTHO05D006930 2.9e-26 123.6 330 39.1
arahy.Tifrunner.gnm1.ann1.YBC12K Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-25 121.7 308 41.2
Nn3g21943 Nelumbo nucifera HOM05D005773 ORTHO05D006930 1.4e-25 121.3 389 38.6
MSTRG.14719 Avicennia marina HOM05D005773 ORTHO05D006930 2.4e-25 120.6 336 33.3
Actinidia18514 Actinidia chinensis HOM05D005773 ORTHO05D006930 5.4e-25 119.4 345 34.2
PSO210G3229 Papaver somniferum HOM05D005773 ORTHO05D006930 5.4e-25 119.4 316 38.0
Aa31LG10G5470 Aethionema arabicum HOM05D005773 ORTHO05D006930 9.2e-25 118.6 364 36.5
Actinidia01071 Actinidia chinensis HOM05D005773 ORTHO05D006930 3.5e-24 116.7 269 45.4
Glyma.17G041600 Glycine max HOM05D005773 ORTHO05D006930 3.5e-24 116.7 128 50.0
BolC8t47338H Brassica oleracea HOM05D005773 ORTHO05D006930 4.6e-24 116.3 362 35.1
Glyma.13G118300 Glycine max HOM05D005773 ORTHO05D006930 5.9e-24 115.9 341 39.6
arahy.Tifrunner.gnm1.ann1.AWA2M3 Arachis hypogaea HOM05D000254 ORTHO05D000165 7.8e-24 115.5 135 44.4
Psat0s1206g0160 Pisum sativum HOM05D005773 ORTHO05D006930 7.8e-24 115.5 336 38.4
Thecc.01G324900 Theobroma cacao HOM05D005773 ORTHO05D006930 7.8e-24 115.5 406 31.8
AT1G48300 Arabidopsis thaliana HOM05D005773 ORTHO05D006930 1.0e-23 115.2 307 40.7
arahy.Tifrunner.gnm1.ann1.9W2SDJ Arachis hypogaea HOM05D005773 ORTHO05D006930 1.3e-23 114.8 138 45.7
Lsat_1_v5_gn_6_118320 Lactuca sativa HOM05D005773 ORTHO05D006930 1.3e-23 114.8 278 40.6
arahy.Tifrunner.gnm1.ann1.F7JGYB Arachis hypogaea HOM05D005773 ORTHO05D006930 2.3e-23 114.0 139 44.6
A08p04910 Brassica napus HOM05D005773 ORTHO05D006930 3.0e-23 113.6 362 33.4
BraA08t32517Z Brassica rapa HOM05D005773 ORTHO05D006930 3.0e-23 113.6 362 33.4
THA.LOC104802618 Tarenaya hassleriana HOM05D005773 ORTHO05D006930 3.9e-23 113.2 393 37.2
arahy.Tifrunner.gnm1.ann1.RWG9MN Arachis hypogaea HOM05D005773 ORTHO05D006930 5.0e-23 112.8 138 44.9
Atru.chr5.865 Acer truncatum HOM05D005773 ORTHO05D006930 1.1e-22 111.7 224 35.7
C08p05240 Brassica napus HOM05D005773 ORTHO05D006930 1.1e-22 111.7 364 34.9
Ciclev10020833m.g Citrus clementina HOM05D005773 ORTHO05D006930 1.1e-22 111.7 307 39.4
CsaV3_3G015560 Cucumis sativus L. HOM05D005773 ORTHO05D006930 1.1e-22 111.7 315 41.3
SalBow7G0248 Salvia bowleyana HOM05D005773 ORTHO05D006930 1.5e-22 111.3 326 34.4
SalBow7G4520 Salvia bowleyana HOM05D005773 ORTHO05D006930 1.5e-22 111.3 329 33.1
Manes.01G234700 Manihot esculenta HOM05D005773 ORTHO05D006930 4.3e-22 109.8 349 37.5
Sc25g0002150 Simmondsia chinensis HOM05D005773 ORTHO05D006930 4.3e-22 109.8 332 38.6
Hma1.2p1_1449F.1_g284070 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 5.6e-22 109.4 102 54.9
ClCG05G006890 Citrullus lanatus HOM05D005773 ORTHO05D006930 7.3e-22 109.0 346 39.9
Ah.07g203560 Amaranthus hybridus HOM05D005773 ORTHO05D006930 9.5e-22 108.6 302 35.1
AL1G54900 Arabidopsis lyrata HOM05D005773 ORTHO05D006930 9.5e-22 108.6 307 38.8
HanXRQChr05g0148961 Helianthus annuus HOM05D005773 ORTHO05D006930 9.5e-22 108.6 339 37.2
Nitab4.5_0000978g0060 Nicotiana tabacum HOM05D005773 ORTHO05D006930 9.5e-22 108.6 419 31.3
Solyc12g098850.2 Solanum lycopersicum HOM05D005773 ORTHO05D006930 9.5e-22 108.6 420 36.0
EL10Ac3g06235 Beta vulgaris HOM05D005773 ORTHO05D006930 1.6e-21 107.8 309 35.3
Carub.0001s3743 Capsella rubella HOM05D005773 ORTHO05D006930 1.6e-21 107.8 370 36.2
PGSC0003DMG400004596 Solanum tuberosum HOM05D005773 ORTHO05D006930 1.6e-21 107.8 418 35.4
CARHR037910 Cardamine hirsuta HOM05D005773 ORTHO05D006930 6.2e-21 105.9 362 33.4
Thhalv10011577m.g Eutrema salsugineum HOM05D005773 ORTHO05D006930 6.2e-21 105.9 373 35.1
CDE09G0185 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 1.0e-20 105.1 310 37.1
Sopen12g033600 Solanum pennellii HOM05D005773 ORTHO05D006930 1.8e-20 104.4 420 35.0
Aqoxy2G02494 Aquilegia oxysepala HOM05D005773 ORTHO05D006930 3.1e-20 103.6 110 50.0
ECA246G2714 Erigeron canadensis HOM05D005773 ORTHO05D006930 4.0e-20 103.2 281 44.1
Migut.H01460 Erythranthe guttata HOM05D005773 ORTHO05D006930 1.2e-19 101.7 287 35.5
Nitab4.5_0012375g0020 Nicotiana tabacum HOM05D005773 ORTHO05D006930 1.5e-19 101.3 421 31.6
ATR0796G282 Amborella trichopoda HOM05D005773 ORTHO05D006930 2.6e-19 100.5 352 37.5
CDE02G3050 Ceratophyllum demersum HOM05D005773 ORTHO05D006930 2.6e-19 100.5 269 35.7
AUR62002540 Chenopodium quinoa HOM05D005773 ORTHO05D006930 2.6e-19 100.5 328 32.0
MSTRG.13210 Avicennia marina HOM05D005773 ORTHO05D006930 3.4e-19 100.1 254 33.9
SGA_v2.0_scaffold109G31080 Striga asiatica HOM05D005773 ORTHO05D006930 3.4e-19 100.1 306 33.7
CAN.G484.97 Capsicum annuum HOM05D005773 ORTHO05D006930 4.4e-19 99.8 347 32.9
Sp1g35250 Schrenkiella parvula HOM05D005773 ORTHO05D006930 4.4e-19 99.8 375 31.7
COL.COLO4_23133 Corchorus olitorius HOM05D005773 ORTHO05D006930 1.3e-18 98.2 346 28.6
Sed0002380 Sechium edule HOM05D005773 ORTHO05D006930 1.7e-18 97.8 351 36.5
MELO3C006755.2 Cucumis melo HOM05D005773 ORTHO05D006930 6.4e-18 95.9 124 45.2
BcaC07g37153 Brassica carinata HOM05D005773 ORTHO05D006930 1.1e-17 95.1 346 34.7
Sed0009476 Sechium edule HOM05D005773 ORTHO05D006930 1.1e-17 95.1 284 42.6
Cc03_g00040 Coffea canephora HOM05D005773 ORTHO05D006930 3.2e-17 93.6 306 31.0
Peaxi162Scf00323g00817 Petunia axillaris HOM05D005773 ORTHO05D006930 9.2e-17 92.0 391 34.5
AUR62023652 Chenopodium quinoa HOM05D005773 ORTHO05D006930 6.0e-16 89.4 96 51.0
Os05g0137300 Oryza sativa ssp. japonica HOM05D005773 ORTHO05D006930 3.9e-15 86.7 173 36.4
unitig_26.g9353 Utricularia gibba HOM05D005773 ORTHO05D006930 1.5e-14 84.7 101 45.5
Zm00001eb417470 Zea mays HOM05D005773 ORTHO05D006930 1.9e-14 84.3 100 52.0
arahy.Tifrunner.gnm1.ann1.EN1MLR Arachis hypogaea HOM05D005773 ORTHO05D006930 1.1e-12 78.6 286 37.1
Hma1.2p1_1067F.1_g253800 Hydrangea macrophylla HOM05D005773 ORTHO05D006930 9.8e-11 72.0 83 48.2
Atru.chr4.3177 Acer truncatum HOM05D005773 ORTHO05D006930 3.7e-10 70.1 167 32.9
CARHR041400 Cardamine hirsuta HOM05D005773 ORTHO05D006930 1.2e-08 65.1 48 56.2
TAR625G0572 Trochodendron aralioides HOM05D005773 ORTHO05D006930 4.6e-08 63.2 67 52.2
HPP92_012765 Vanilla planifolia HOM05D005773 ORTHO05D006930 3.0e-07 60.5 66 48.5
SEGI_24223 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 8.6e-07 58.9 312 34.6
Cpa.g.sc57.12 Carica papaya HOM05D005773 ORTHO05D006930 1.1e-06 58.5 46 65.2
SEGI_38196 Sequoiadendron giganteum HOM05D005773 ORTHO05D006930 1.5e-06 58.2 313 34.8
Pp3c14_16980 Physcomitrium patens HOM05D029403 ORTHO05D006930 2.5e-06 57.4 122 33.6


User provided reference genes

Program Settings