Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04100 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.8e-114 416.0 219 100.0
Eucgr.H04210 Eucalyptus grandis HOM05D000780 ORTHO05D009033 4.6e-86 321.6 221 82.4
Gohir.D13G172200 Gossypium hirsutum HOM05D000780 ORTHO05D009033 5.8e-65 251.5 222 64.9
Gorai.013G188500 Gossypium raimondii HOM05D000780 ORTHO05D009033 5.8e-65 251.5 222 64.9
Eucgr.H04102 Eucalyptus grandis HOM05D000780 ORTHO05D009033 1.3e-64 250.4 219 67.6
QL01p042200 Quercus lobata HOM05D000780 ORTHO05D009033 2.2e-64 249.6 219 64.8
Gohir.A13G161800 Gossypium hirsutum HOM05D000780 ORTHO05D009033 1.4e-63 246.9 222 64.4
Thecc.05G266300 Theobroma cacao HOM05D000780 ORTHO05D009033 1.4e-63 246.9 222 65.3
PGR004G1412 Punica granatum HOM05D000780 ORTHO05D009033 3.2e-63 245.7 222 64.0
Nn1g03021 Nelumbo nucifera HOM05D000780 ORTHO05D009033 1.2e-62 243.8 222 64.0
GSVIVG01026324001 Vitis vinifera HOM05D000780 ORTHO05D009033 1.2e-62 243.8 222 64.4
Manes.09G146600 Manihot esculenta HOM05D000780 ORTHO05D009033 1.8e-61 240.0 222 62.2
Duzib177G0863 Durio zibethinus HOM05D000780 ORTHO05D009033 2.3e-61 239.6 218 63.8
Glyma.20G221500 Glycine max HOM05D000780 ORTHO05D009033 2.3e-61 239.6 219 61.6
Dinv01155 Davidia involucrata HOM05D000780 ORTHO05D009033 3.9e-61 238.8 222 62.6
Potri.019G023700 Populus trichocarpa HOM05D000780 ORTHO05D009033 3.3e-60 235.7 222 61.7
Ciclev10021307m.g Citrus clementina HOM05D000780 ORTHO05D009033 1.3e-59 233.8 222 60.4
Atru.chr2.1117 Acer truncatum HOM05D000780 ORTHO05D009033 2.1e-59 233.0 222 61.7
FvH4_6g01461 Fragaria vesca HOM05D000780 ORTHO05D009033 2.8e-59 232.6 218 62.4
MD12G1251900 Malus domestica HOM05D000780 ORTHO05D009033 2.8e-59 232.6 221 60.2
CSS0005756 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 3.7e-59 232.3 222 60.8
Nitab4.5_0000841g0080 Nicotiana tabacum HOM05D000780 ORTHO05D009033 6.3e-59 231.5 218 59.6
CsaV3_1G045040 Cucumis sativus L. HOM05D000780 ORTHO05D009033 1.4e-58 230.3 219 59.8
Ca_09986_v3 Cicer arietinum L. HOM05D000780 ORTHO05D009033 2.4e-58 229.6 222 59.0
Nitab4.5_0003148g0030 Nicotiana tabacum HOM05D000780 ORTHO05D009033 2.4e-58 229.6 222 59.0
Peaxi162Scf00077g00138 Petunia axillaris HOM05D000780 ORTHO05D009033 3.1e-58 229.2 224 60.7
TAR633G0111 Trochodendron aralioides HOM05D000780 ORTHO05D009033 5.3e-58 228.4 219 60.7
Phvul.L002032 Phaseolus vulgaris HOM05D000780 ORTHO05D009033 9.0e-58 227.6 219 58.4
Hma1.2p1_0130F.1_g060510 Hydrangea macrophylla HOM05D000780 ORTHO05D009033 1.2e-57 227.3 222 58.6
Rhsim05G0170400 Rhododendron simsii HOM05D000780 ORTHO05D009033 1.2e-57 227.3 222 60.4
MSTRG.27431 Avicennia marina HOM05D000780 ORTHO05D009033 1.5e-57 226.9 222 60.4
Aqoxy5G00106 Aquilegia oxysepala HOM05D000780 ORTHO05D009033 4.5e-57 225.3 222 59.5
RcHm_v2.0_Chr3g0449091 Rosa chinensis HOM05D000780 ORTHO05D009033 4.5e-57 225.3 216 60.2
EL10Ac4g09771 Beta vulgaris HOM05D000780 ORTHO05D009033 5.9e-57 224.9 219 61.2
VMungo0720G1285 Vigna mungo HOM05D000780 ORTHO05D009033 5.9e-57 224.9 219 58.4
Ah.06g187930 Amaranthus hybridus HOM05D000780 ORTHO05D009033 7.6e-57 224.6 221 57.9
Actinidia06831 Actinidia chinensis HOM05D000780 ORTHO05D009033 1.7e-56 223.4 222 58.6
Psat6g142000 Pisum sativum HOM05D000780 ORTHO05D008187 1.7e-56 223.4 222 56.8
Medtr1g079763 Medicago truncatula HOM05D000780 ORTHO05D009033 2.2e-56 223.0 222 56.8
Solyc04g050470.4 Solanum lycopersicum HOM05D000780 ORTHO05D009033 2.2e-56 223.0 221 58.4
ATR0088G058 Amborella trichopoda HOM05D000780 ORTHO05D009033 5.0e-56 221.9 221 58.4
BraA04t16719Z Brassica rapa HOM05D000780 ORTHO05D009033 5.0e-56 221.9 219 59.8
ClCG03G011490 Citrullus lanatus HOM05D000780 ORTHO05D009033 5.0e-56 221.9 225 57.8
Lalb_Chr21g0311301 Lupinus albus HOM05D000780 ORTHO05D009033 6.5e-56 221.5 222 57.2
THA.LOC104821566 Tarenaya hassleriana HOM05D000780 ORTHO05D009033 6.5e-56 221.5 236 56.4
BcaC02g09559 Brassica carinata HOM05D000780 ORTHO05D009033 3.2e-55 219.2 219 58.4
BolC4t25992H Brassica oleracea HOM05D000780 ORTHO05D009033 3.2e-55 219.2 219 58.4
A04p10530 Brassica napus HOM05D000780 ORTHO05D009033 4.2e-55 218.8 220 58.6
Carub.0007s3248 Capsella rubella HOM05D000780 ORTHO05D009033 4.2e-55 218.8 221 56.6
Hund07171 Selenicereus undatus HOM05D000780 ORTHO05D009033 9.3e-55 217.6 222 57.7
C04p44170 Brassica napus HOM05D000780 ORTHO05D009033 1.2e-54 217.2 219 58.0
TWI34G1716 Tripterygium wilfordii HOM05D000780 ORTHO05D009033 1.2e-54 217.2 222 56.3
Lj5g0019051 Lotus japonicus HOM05D000780 ORTHO05D009033 1.6e-54 216.9 222 56.8
PSO210G3904 Papaver somniferum HOM05D000780 ORTHO05D009033 1.6e-54 216.9 222 57.7
Thhalv10027857m.g Eutrema salsugineum HOM05D000780 ORTHO05D009033 2.7e-54 216.1 222 56.8
AUR62000636 Chenopodium quinoa HOM05D000780 ORTHO05D008187 4.6e-54 215.3 222 58.1
AUR62006989 Chenopodium quinoa HOM05D000780 ORTHO05D009033 4.6e-54 215.3 222 58.1
DCAR_030971 Daucus carota HOM05D000780 ORTHO05D009033 7.9e-54 214.5 222 55.4
arahy.Tifrunner.gnm1.ann1.ZAXM00 Arachis hypogaea HOM05D000780 ORTHO05D009033 1.0e-53 214.2 219 56.2
MBI10_g26046_MAGBIO Magnolia biondii HOM05D000780 ORTHO05D009033 1.3e-53 213.8 221 55.7
AT5G37360 Arabidopsis thaliana HOM05D000780 ORTHO05D009033 3.9e-53 212.2 222 56.3
Sc24g0002520 Simmondsia chinensis HOM05D000780 ORTHO05D009033 3.9e-53 212.2 223 58.7
AL7G45990 Arabidopsis lyrata HOM05D000780 ORTHO05D009033 6.7e-53 211.5 222 56.3
Lsat_1_v5_gn_9_46781 Lactuca sativa HOM05D000780 ORTHO05D009033 6.7e-53 211.5 221 55.7
arahy.Tifrunner.gnm1.ann1.09X96J Arachis hypogaea HOM05D000780 ORTHO05D009033 1.5e-52 210.3 219 55.3
vmacro19978 Vaccinium macrocarpon HOM05D000780 ORTHO05D009033 2.5e-52 209.5 262 51.1
Migut.F02052 Erythranthe guttata HOM05D000780 ORTHO05D009033 3.3e-52 209.1 222 55.9
CARHR215730 Cardamine hirsuta HOM05D000780 ORTHO05D009033 4.3e-52 208.8 222 55.9
Sp7g05110 Schrenkiella parvula HOM05D000780 ORTHO05D009033 5.7e-52 208.4 222 55.9
ECA232G3479 Erigeron canadensis HOM05D000780 ORTHO05D009033 7.4e-52 208.0 218 54.6
Aa31LG9G18020 Aethionema arabicum HOM05D000780 ORTHO05D009033 3.7e-51 205.7 221 55.2
SGA_v2.0_scaffold329G48830 Striga asiatica HOM05D002740 ORTHO05D003126 4.8e-51 205.3 252 51.6
SalBow1G6873 Salvia bowleyana HOM05D000780 ORTHO05D009033 1.4e-50 203.8 222 55.0
Os02g0815400 Oryza sativa ssp. japonica HOM05D000780 ORTHO05D009033 4.1e-50 202.2 221 52.0
Cpa.g.c33516 Carica papaya HOM05D000780 ORTHO05D009033 5.3e-50 201.8 194 60.3
CANSAT54G0520 Cannabis sativa HOM05D000780 ORTHO05D009033 6.9e-50 201.4 205 57.1
Zm00001eb258750 Zea mays HOM05D000780 ORTHO05D009033 6.9e-50 201.4 220 53.2
COL.COLO4_15539 Corchorus olitorius HOM05D000780 ORTHO05D008187 2.6e-49 199.5 185 61.6
Sabra13G0046100 Salix brachista HOM05D000780 ORTHO05D008187 4.5e-49 198.7 219 54.3
Glyma.10G167600 Glycine max HOM05D000780 ORTHO05D009033 1.0e-48 197.6 241 51.0
Potri.013G050300 Populus trichocarpa HOM05D000780 ORTHO05D009033 5.0e-48 195.3 187 59.4
MELO3C010086.2 Cucumis melo HOM05D000780 ORTHO05D009033 1.9e-47 193.4 188 59.0
unitig_37.g12284 Utricularia gibba HOM05D000780 ORTHO05D009033 4.2e-47 192.2 217 52.5
FAN02G1432 Fragaria x ananassa HOM05D000780 ORTHO05D009033 9.4e-47 191.0 221 53.8
Prupe.6G353000 Prunus persica HOM05D000780 ORTHO05D009033 2.1e-46 189.9 217 52.1
FAN05G0905 Fragaria x ananassa HOM05D000780 ORTHO05D001132 4.6e-46 188.7 230 52.6
SalBow1G5981 Salvia bowleyana HOM05D000780 ORTHO05D009033 6.1e-46 188.3 252 48.8
TPR.G10273 Trifolium pratense HOM05D000780 ORTHO05D009033 6.1e-46 188.3 232 52.2
FAN14G3828 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.0e-45 187.6 226 52.7
FAN14G4937 Fragaria x ananassa HOM05D000780 ORTHO05D001132 1.0e-45 187.6 226 52.7
Haze_04472 Corylus avellana HOM05D000780 ORTHO05D009033 1.3e-43 180.6 219 53.0
Sabra19G0033700 Salix brachista HOM05D000780 ORTHO05D009033 2.8e-43 179.5 224 51.3
HanXRQChr05g0145151 Helianthus annuus HOM05D000780 ORTHO05D009033 1.5e-41 173.7 222 46.4
Oeu001248.1 Olea europaea HOM05D000780 ORTHO05D008187 6.5e-40 168.3 243 49.0
Lj2A46G68 Lonicera japonica HOM05D000780 ORTHO05D009033 1.8e-37 160.2 147 61.9
CSS0024577 Camellia sinensis var. sinensis HOM05D000780 ORTHO05D009033 1.7e-35 153.7 152 59.9
Sopen04g021250 Solanum pennellii HOM05D000780 ORTHO05D009033 4.5e-33 145.6 135 61.5
CiPaw.07G074400 Carya illinoinensis HOM05D000780 ORTHO05D009033 8.5e-32 141.4 153 55.6
AagrBONN_evm.TU.Sc2ySwM_228.3981 Anthoceros agrestis HOM05D000780 ORTHO05D009033 7.2e-31 138.3 220 40.5
SMO172G0144 Selaginella moellendorffii HOM05D000780 ORTHO05D009033 5.2e-29 132.1 194 42.3
Sed0013634 Sechium edule HOM05D000780 ORTHO05D009033 1.5e-28 130.6 145 53.8
FAN09G0636 Fragaria x ananassa HOM05D000780 ORTHO05D001132 4.4e-28 129.0 114 64.9
Pp3c18_1300 Physcomitrium patens HOM05D000780 ORTHO05D009033 5.7e-28 128.6 216 38.0
Cc09_g03030 Coffea canephora HOM05D000780 ORTHO05D009033 1.2e-25 120.9 120 61.7
PGSC0003DMG402028709 Solanum tuberosum HOM05D000780 ORTHO05D009033 1.2e-25 120.9 120 59.2
SEGI_05244 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 3.2e-23 112.8 120 56.7
HPP92_009057 Vanilla planifolia HOM05D000780 ORTHO05D009033 7.2e-23 111.7 122 53.3
CBR_g11120 Chara braunii HOM05D000780 ORTHO05D009033 3.0e-21 106.3 214 36.4
MD12G1251000 Malus domestica HOM05D000072 ORTHO05D009033 1.5e-20 104.0 98 59.2
HPP92_009056 Vanilla planifolia HOM05D001254 ORTHO05D001386 1.8e-18 97.1 128 42.2
SEGI_21696 Sequoiadendron giganteum HOM05D000780 ORTHO05D009033 1.5e-15 87.4 99 48.5
FAN11G0130 Fragaria x ananassa HOM05D000780 ORTHO05D009033 5.5e-15 85.5 190 36.8
MD12G1250900 Malus domestica HOM05D000780 ORTHO05D009033 2.6e-12 76.6 56 67.9
Cc09_g03040 Coffea canephora HOM05D000780 ORTHO05D009033 3.7e-11 72.8 56 62.5
FvH4_3g18300 Fragaria vesca HOM05D000780 ORTHO05D196851 7.8e-09 65.1 46 71.7


User provided reference genes

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