Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 4.9e-63 244.2 115 100.0
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 2.1e-34 149.1 113 61.1
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.8e-33 146.0 114 58.8
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 3.1e-33 145.2 113 58.4
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 4.5e-32 141.4 113 54.0
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 4.5e-32 141.4 109 59.6
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 5.8e-32 141.0 113 59.3
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 2.2e-31 139.0 112 55.4
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 4.9e-31 137.9 107 56.1
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 4.9e-31 137.9 112 58.0
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 8.4e-31 137.1 113 54.0
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 1.4e-30 136.3 112 56.2
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.9e-30 136.0 113 57.5
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.9e-30 136.0 107 53.3
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 2.5e-30 135.6 115 58.3
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 2.5e-30 135.6 113 56.6
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 3.2e-30 135.2 116 57.8
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 4.2e-30 134.8 99 59.6
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 4.2e-30 134.8 110 57.3
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 5.5e-30 134.4 108 54.6
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 7.1e-30 134.0 113 56.6
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 7.1e-30 134.0 113 54.0
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 7.1e-30 134.0 108 53.7
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 9.3e-30 133.7 113 56.6
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 9.3e-30 133.7 113 53.1
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.2e-29 133.3 108 54.6
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.2e-29 133.3 107 57.0
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 1.2e-29 133.3 108 55.6
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 1.6e-29 132.9 113 55.8
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 1.6e-29 132.9 108 55.6
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.7e-29 132.1 114 57.0
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 2.7e-29 132.1 108 55.6
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 2.7e-29 132.1 113 54.0
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 2.7e-29 132.1 109 55.0
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 3.5e-29 131.7 93 65.6
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.0e-29 131.0 105 54.3
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 7.9e-29 130.6 114 51.8
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 1.0e-28 130.2 113 53.1
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 1.8e-28 129.4 95 61.1
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 3.0e-28 128.6 111 54.1
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 3.0e-28 128.6 114 53.5
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 5.1e-28 127.9 85 65.9
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 5.1e-28 127.9 91 61.5
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 5.1e-28 127.9 114 51.8
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 6.7e-28 127.5 114 57.0
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 8.7e-28 127.1 113 53.1
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 8.7e-28 127.1 107 53.3
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 8.7e-28 127.1 113 46.9
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 8.7e-28 127.1 114 53.5
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 1.1e-27 126.7 114 53.5
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 2.5e-27 125.6 112 51.8
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 3.3e-27 125.2 112 51.8
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 5.7e-27 124.4 113 50.4
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 5.7e-27 124.4 114 50.9
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 5.7e-27 124.4 113 50.4
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 7.4e-27 124.0 117 53.0
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 7.4e-27 124.0 113 48.7
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 9.6e-27 123.6 114 51.8
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.3e-26 123.2 111 52.3
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 1.3e-26 123.2 113 49.6
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 1.3e-26 123.2 108 48.1
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.6e-26 122.9 115 55.7
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.6e-26 122.9 112 48.2
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.6e-26 122.9 114 51.8
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.6e-26 122.9 116 52.6
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 2.1e-26 122.5 111 51.4
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 3.7e-26 121.7 113 52.2
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 1.4e-25 119.8 135 45.9
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 2.4e-25 119.0 116 50.0
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 2.4e-25 119.0 113 50.4
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 4.1e-25 118.2 85 61.2
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 5.3e-25 117.9 117 51.3
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 5.3e-25 117.9 114 48.2
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 9.0e-25 117.1 83 59.0
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 9.0e-25 117.1 117 48.7
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 9.0e-25 117.1 117 48.7
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.2e-24 116.7 112 49.1
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 1.5e-24 116.3 107 49.5
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 2.6e-24 115.5 76 65.8
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 3.4e-24 115.2 116 49.1
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 3.4e-24 115.2 85 58.8
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 4.5e-24 114.8 113 49.6
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 7.6e-24 114.0 86 55.8
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 2.9e-23 112.1 114 44.7
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 2.9e-23 112.1 98 54.1
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 3.8e-23 111.7 86 55.8
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 3.8e-23 111.7 93 52.7
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 5.0e-23 111.3 114 46.5
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 5.0e-23 111.3 76 61.8
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 6.5e-23 110.9 75 61.3
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.5e-23 110.9 92 53.3
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.5e-23 110.9 93 51.6
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 6.5e-23 110.9 122 45.1
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 8.4e-23 110.5 114 46.5
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 1.1e-22 110.2 75 62.7
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.4e-22 109.8 113 45.1
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.9e-22 109.4 114 44.7
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 2.5e-22 109.0 85 55.3
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 3.2e-22 108.6 84 53.6
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 3.2e-22 108.6 106 46.2
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 4.2e-22 108.2 111 47.7
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 5.5e-22 107.8 96 50.0
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 5.5e-22 107.8 117 44.4
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 9.3e-22 107.1 105 45.7
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 9.3e-22 107.1 85 55.3
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.2e-21 106.7 117 43.6
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.2e-21 106.7 79 57.0
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 1.6e-21 106.3 85 50.6
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.6e-21 106.3 79 57.0
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 2.1e-21 105.9 85 51.8
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 2.1e-21 105.9 79 55.7
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 2.7e-21 105.5 85 54.1
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 2.7e-21 105.5 105 46.7
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.5e-21 105.1 79 57.0
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 4.6e-21 104.8 112 41.1
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 4.6e-21 104.8 112 42.0
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 4.6e-21 104.8 112 42.0
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 4.6e-21 104.8 112 42.0
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 4.6e-21 104.8 112 42.0
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 4.6e-21 104.8 89 52.8
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 4.6e-21 104.8 89 52.8
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 6.1e-21 104.4 112 40.2
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 6.1e-21 104.4 112 42.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 6.1e-21 104.4 85 52.9
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 6.1e-21 104.4 112 42.9
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 7.9e-21 104.0 85 52.9
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 7.9e-21 104.0 79 55.7
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 7.9e-21 104.0 85 51.8
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 7.9e-21 104.0 89 50.6
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 1.0e-20 103.6 85 52.9
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 1.0e-20 103.6 85 52.9
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 1.0e-20 103.6 85 52.9
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 1.0e-20 103.6 85 52.9
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.0e-20 103.6 85 51.8
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 1.0e-20 103.6 93 49.5
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 1.3e-20 103.2 111 45.9
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 2.3e-20 102.4 93 47.3
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.3e-20 102.4 114 44.7
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 3.0e-20 102.1 85 50.6
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 3.9e-20 101.7 97 49.5
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 3.9e-20 101.7 81 53.1
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 6.7e-20 100.9 113 41.6
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 6.7e-20 100.9 94 48.9
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 6.7e-20 100.9 93 46.2
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 6.7e-20 100.9 90 48.9
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.1e-19 100.1 83 49.4
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 1.5e-19 99.8 120 40.0
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 1.9e-19 99.4 85 50.6
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 2.5e-19 99.0 91 52.7
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 2.5e-19 99.0 79 53.2
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 3.3e-19 98.6 85 48.2
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 3.3e-19 98.6 112 45.5
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 3.3e-19 98.6 84 51.2
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 4.3e-19 98.2 76 55.3
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 4.3e-19 98.2 103 46.6
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 5.7e-19 97.8 116 44.8
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 5.7e-19 97.8 89 49.4
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.3e-18 96.7 116 39.7
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 3.7e-18 95.1 76 51.3
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 3.7e-18 95.1 77 53.2
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 4.8e-18 94.7 76 52.6
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 8.2e-18 94.0 97 43.3
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 4.1e-17 91.7 76 52.6
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 1.2e-16 90.1 79 50.6
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 1.5e-16 89.7 110 38.2
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 7.7e-16 87.4 110 37.3
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 1.9e-14 82.8 90 44.4
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 1.6e-13 79.7 115 41.7
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 2.1e-13 79.3 124 33.9
Zm00001eb285980 Zea mays HOM05D002444 ORTHO05D004748 2.1e-13 79.3 104 36.5
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 2.7e-13 79.0 66 53.0
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 7.9e-13 77.4 82 41.5
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 5.1e-12 74.7 92 45.7
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 7.4e-11 70.9 90 35.6
Oeu056372.1 Olea europaea HOM05D002444 ORTHO05D004748 1.8e-09 66.2 66 45.5
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 1.5e-08 63.2 107 29.0
ATR1127G131 Amborella trichopoda HOM05D008739 ORTHO05D010871 1.0e-07 60.5 107 31.8
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis HOM05D002444 ORTHO05D004748 1.3e-07 60.1 102 35.3
HanXRQChr08g0230271 Helianthus annuus HOM05D008739 ORTHO05D010871 1.3e-07 60.1 69 40.6
Migut.N00722 Erythranthe guttata HOM05D008739 ORTHO05D010871 6.5e-07 57.8 71 42.3
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 8.5e-07 57.4 61 44.3
SMO361G0424 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 8.5e-07 57.4 64 42.2
SMO361G0689 Selaginella moellendorffii HOM05D007017 ORTHO05D008784 8.5e-07 57.4 64 42.2
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 3.2e-06 55.5 90 35.6
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 5.5e-06 54.7 35 62.9
MBI15_g46028_MAGBIO Magnolia biondii HOM05D008739 ORTHO05D010871 7.2e-06 54.3 69 37.7


User provided reference genes

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